Wall clock time and date at job start Mon Mar 30 2020 08:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00255 * 2 1 4 4 H 1.08999 * 109.46883 * 29.99295 * 3 2 1 5 5 C 1.52995 * 109.47468 * 149.99929 * 3 2 1 6 6 N 1.46907 * 109.46698 * 299.99893 * 5 3 2 7 7 C 1.46905 * 110.99624 * 169.99897 * 6 5 3 8 8 C 1.50697 * 109.47360 * 284.05670 * 7 6 5 9 9 H 1.08003 * 119.99753 * 4.77513 * 8 7 6 10 10 C 1.37873 * 120.00298 * 184.77483 * 8 7 6 11 11 N 1.31515 * 119.99800 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00190 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47325 * 89.99947 * 12 10 8 14 14 H 1.48498 * 109.46971 * 210.00099 * 12 10 8 15 15 H 1.48501 * 109.46742 * 329.99829 * 12 10 8 16 16 C 1.46896 * 111.00084 * 293.94925 * 6 5 3 17 17 C 1.53001 * 109.47330 * 163.86917 * 16 6 5 18 18 C 1.52996 * 117.49700 * 245.35265 * 17 16 6 19 19 C 1.52991 * 117.50007 * 176.68950 * 17 16 6 20 20 C 1.52999 * 109.46772 * 269.99713 * 3 2 1 21 21 C 1.53784 * 113.61304 * 157.49248 * 20 3 2 22 22 C 1.53774 * 87.08221 * 220.01838 * 21 20 3 23 23 C 1.53781 * 87.08292 * 25.43499 * 22 21 20 24 24 H 1.09001 * 109.47325 * 300.00300 * 1 2 3 25 25 H 1.09003 * 109.46841 * 60.00329 * 1 2 3 26 26 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47110 * 59.99588 * 5 3 2 28 28 H 1.08996 * 109.47246 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47050 * 44.05596 * 7 6 5 30 30 H 1.08995 * 109.46986 * 164.05440 * 7 6 5 31 31 H 0.96998 * 120.00102 * 180.02562 * 11 10 8 32 32 H 1.08995 * 109.47303 * 283.87368 * 16 6 5 33 33 H 1.09011 * 109.46818 * 43.87029 * 16 6 5 34 34 H 1.08999 * 115.54889 * 31.01388 * 17 16 6 35 35 H 1.08999 * 117.50552 * 359.97438 * 18 17 16 36 36 H 1.09003 * 117.50181 * 145.02335 * 18 17 16 37 37 H 1.09004 * 117.50038 * 214.97854 * 19 17 16 38 38 H 1.09000 * 117.50146 * 359.97438 * 19 17 16 39 39 H 1.08993 * 112.85129 * 288.80476 * 20 3 2 40 40 H 1.08996 * 113.61803 * 334.57370 * 21 20 3 41 41 H 1.09007 * 113.61233 * 105.47300 * 21 20 3 42 42 H 1.09000 * 113.62294 * 270.88450 * 22 21 20 43 43 H 1.09000 * 113.69254 * 139.99190 * 22 21 20 44 44 H 1.09001 * 113.61613 * 220.01668 * 23 22 21 45 45 H 1.09000 * 113.61052 * 89.11462 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 3.3589 1.2633 0.7212 6 7 3.1597 0.8160 2.1063 7 6 4.4455 0.5355 2.7590 8 6 4.9853 -0.7804 2.2609 9 1 4.4686 -1.3139 1.4768 10 6 6.1386 -1.3033 2.8062 11 7 6.7674 -0.6539 3.7614 12 14 6.8080 -2.9341 2.1883 13 1 7.7464 -2.6898 1.0636 14 1 7.5252 -3.6242 3.2903 15 1 5.6845 -3.7847 1.7197 16 6 2.3848 1.8018 2.8716 17 6 1.8553 1.1520 4.1515 18 6 0.3395 0.9985 4.2909 19 6 1.0837 2.0415 5.1283 20 6 2.2178 1.7712 -1.4425 21 6 2.3078 3.2994 -1.5895 22 6 1.4688 3.1469 -2.8691 23 6 0.9164 1.8483 -2.2582 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 4.0242 0.5693 0.2075 28 1 3.8025 2.2589 0.7208 29 1 5.1532 1.3306 2.5244 30 1 4.3015 0.4840 3.8382 31 1 7.5790 -1.0215 4.1448 32 1 3.0247 2.6454 3.1302 33 1 1.5471 2.1526 2.2687 34 1 2.4817 0.3661 4.5736 35 1 -0.2807 1.3607 3.4709 36 1 -0.0315 0.1118 4.8051 37 1 1.2021 1.8407 6.1931 38 1 0.9537 3.0898 4.8593 39 1 3.0196 1.2345 -1.9494 40 1 1.7981 3.8452 -0.7955 41 1 3.3197 3.6617 -1.7714 42 1 2.0663 2.9876 -3.7667 43 1 0.7160 3.9252 -2.9946 44 1 0.8048 1.0391 -2.9799 45 1 0.0262 1.9975 -1.6471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595335790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:50 Heat of formation + Delta-G solvation = 2.507112 kcal Electronic energy + Delta-G solvation = -21625.680710 eV Core-core repulsion = 18644.918842 eV Total energy + Delta-G solvation = -2980.761869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.58054 -37.66250 -36.49624 -35.23131 -32.45661 -30.03662 -27.52840 -26.18345 -25.83251 -25.45412 -23.69354 -22.04191 -21.51531 -20.65869 -19.40423 -19.28137 -16.56026 -16.25850 -15.77644 -15.40235 -15.03304 -14.81201 -14.57271 -14.03121 -13.59135 -13.29333 -13.18318 -12.68134 -12.51296 -12.19310 -11.99104 -11.95086 -11.63387 -11.46069 -11.22235 -11.12161 -10.87948 -10.76070 -10.63258 -10.54445 -10.47041 -10.14082 -10.02884 -9.89636 -9.61302 -9.39017 -9.09360 -8.85877 -8.32428 -7.09760 -5.92938 -3.92604 3.38396 3.44279 3.50806 4.14324 4.21360 4.51004 4.60663 4.70532 4.73943 4.92001 4.96071 5.22528 5.29840 5.37675 5.41697 5.46374 5.51821 5.64558 5.67852 5.69595 5.81839 5.85908 5.88860 5.89908 5.93337 5.96752 6.01638 6.03670 6.08847 6.16180 6.27145 6.27820 6.36112 6.42760 6.50679 6.72118 6.85589 7.31863 7.40323 7.73303 7.94709 8.22596 8.31483 8.66006 9.16922 9.71026 11.17733 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.006535 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.531599 B = 4283.873626 C = 5515.855218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.106 3.894 4 H 0.052 0.948 5 C 0.068 3.932 6 N -0.521 5.521 7 C 0.192 3.808 8 C -0.497 4.497 9 H 0.065 0.935 10 C 0.053 3.947 11 N -0.903 5.903 12 Si 0.895 3.105 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.273 1.273 16 C 0.084 3.916 17 C -0.126 4.126 18 C -0.178 4.178 19 C -0.191 4.191 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.030 0.970 29 H -0.014 1.014 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.130 7.806 -7.576 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.047 3.953 4 H 0.070 0.930 5 C -0.061 4.061 6 N -0.245 5.245 7 C 0.067 3.933 8 C -0.535 4.535 9 H 0.083 0.917 10 C -0.147 4.147 11 N -0.543 5.543 12 Si 0.723 3.277 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.197 1.197 16 C -0.044 4.044 17 C -0.145 4.145 18 C -0.215 4.215 19 C -0.229 4.229 20 C -0.150 4.150 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.004 0.996 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.118 7.174 -7.465 16.711 hybrid contribution 0.719 0.105 -0.162 0.745 sum -12.399 7.279 -7.626 16.275 Atomic orbital electron populations 1.22855 0.82993 1.02054 0.99094 1.88068 1.17799 1.26700 1.94602 1.22214 0.95530 0.84829 0.92696 0.93050 1.22045 0.94572 0.98615 0.90843 1.62027 1.21850 1.40361 1.00302 1.19780 0.82871 0.95735 0.94919 1.21216 1.07475 1.04984 1.19858 0.91663 1.24976 0.96970 0.97581 0.95223 1.69963 1.18651 1.39006 1.26707 0.86540 0.78959 0.84007 0.78187 1.20890 1.21438 1.19737 1.21613 0.96793 0.93073 0.92934 1.22317 0.93556 1.01607 0.96992 1.22889 0.95637 1.00549 1.02416 1.22938 1.06438 0.96244 0.97261 1.23106 0.98706 0.96182 0.97050 1.22901 1.00505 0.96043 0.97769 1.22824 0.99554 0.97981 0.97591 1.22973 0.97441 0.97725 0.99251 0.94799 0.94413 0.90454 0.89330 0.95157 0.99606 0.94654 0.93128 0.95747 0.92628 0.86753 0.89704 0.89376 0.89258 0.89557 0.88523 0.90382 0.91323 0.90317 0.91840 0.91497 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 101.05 1.07 1.43 16 2 O -0.35 -6.25 10.16 -35.23 -0.36 -6.61 16 3 C 0.11 1.68 1.94 -26.73 -0.05 1.63 16 4 H 0.05 0.78 5.73 -51.93 -0.30 0.48 16 5 C 0.07 1.32 4.47 -3.82 -0.02 1.30 16 6 N -0.52 -11.36 4.24 -236.07 -1.00 -12.37 16 7 C 0.19 5.04 4.55 -4.97 -0.02 5.02 16 8 C -0.50 -14.23 8.62 -34.44 -0.30 -14.53 16 9 H 0.07 1.90 7.67 -52.48 -0.40 1.50 16 10 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 12 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.08 1.56 5.11 -3.83 -0.02 1.54 16 17 C -0.13 -2.25 5.58 -90.63 -0.51 -2.75 16 18 C -0.18 -2.62 10.18 -26.69 -0.27 -2.89 16 19 C -0.19 -2.75 10.25 -26.70 -0.27 -3.02 16 20 C -0.13 -1.75 3.36 -89.80 -0.30 -2.05 16 21 C -0.13 -1.53 7.63 -25.92 -0.20 -1.72 16 22 C -0.14 -1.41 8.08 -25.92 -0.21 -1.62 16 23 C -0.14 -1.51 6.18 -25.92 -0.16 -1.67 16 24 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.04 0.43 4.95 -51.93 -0.26 0.17 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.93 7.34 -51.93 -0.38 1.55 16 28 H 0.03 0.57 8.12 -51.93 -0.42 0.14 16 29 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 30 H 0.04 0.99 6.46 -51.93 -0.34 0.65 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.06 0.92 5.67 -51.92 -0.29 0.63 16 34 H 0.11 2.38 6.88 -51.93 -0.36 2.02 16 35 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.84 6.33 -51.93 -0.33 0.51 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.48 351.39 -9.81 -40.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.10 Total: 0.54 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.36 Total: -17.90 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.27 Total: -38.83 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.36 Total: -6.61 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.48 -9.81 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.795 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds