Wall clock time and date at job start Mon Mar 30 2020 08:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00255 * 2 1 4 4 H 1.08999 * 109.46883 * 29.99295 * 3 2 1 5 5 C 1.52995 * 109.47468 * 149.99929 * 3 2 1 6 6 N 1.46907 * 109.46698 * 299.99893 * 5 3 2 7 7 C 1.46905 * 110.99624 * 169.99897 * 6 5 3 8 8 C 1.50697 * 109.47360 * 284.05670 * 7 6 5 9 9 H 1.08003 * 119.99753 * 4.77513 * 8 7 6 10 10 C 1.37873 * 120.00298 * 184.77483 * 8 7 6 11 11 N 1.31515 * 119.99800 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00190 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47325 * 89.99947 * 12 10 8 14 14 H 1.48498 * 109.46971 * 210.00099 * 12 10 8 15 15 H 1.48501 * 109.46742 * 329.99829 * 12 10 8 16 16 C 1.46896 * 111.00084 * 293.94925 * 6 5 3 17 17 C 1.53001 * 109.47330 * 163.86917 * 16 6 5 18 18 C 1.52996 * 117.49700 * 245.35265 * 17 16 6 19 19 C 1.52991 * 117.50007 * 176.68950 * 17 16 6 20 20 C 1.52999 * 109.46772 * 269.99713 * 3 2 1 21 21 C 1.53784 * 113.61304 * 157.49248 * 20 3 2 22 22 C 1.53774 * 87.08221 * 220.01838 * 21 20 3 23 23 C 1.53781 * 87.08292 * 25.43499 * 22 21 20 24 24 H 1.09001 * 109.47325 * 300.00300 * 1 2 3 25 25 H 1.09003 * 109.46841 * 60.00329 * 1 2 3 26 26 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47110 * 59.99588 * 5 3 2 28 28 H 1.08996 * 109.47246 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47050 * 44.05596 * 7 6 5 30 30 H 1.08995 * 109.46986 * 164.05440 * 7 6 5 31 31 H 0.96998 * 120.00102 * 180.02562 * 11 10 8 32 32 H 1.08995 * 109.47303 * 283.87368 * 16 6 5 33 33 H 1.09011 * 109.46818 * 43.87029 * 16 6 5 34 34 H 1.08999 * 115.54889 * 31.01388 * 17 16 6 35 35 H 1.08999 * 117.50552 * 359.97438 * 18 17 16 36 36 H 1.09003 * 117.50181 * 145.02335 * 18 17 16 37 37 H 1.09004 * 117.50038 * 214.97854 * 19 17 16 38 38 H 1.09000 * 117.50146 * 359.97438 * 19 17 16 39 39 H 1.08993 * 112.85129 * 288.80476 * 20 3 2 40 40 H 1.08996 * 113.61803 * 334.57370 * 21 20 3 41 41 H 1.09007 * 113.61233 * 105.47300 * 21 20 3 42 42 H 1.09000 * 113.62294 * 270.88450 * 22 21 20 43 43 H 1.09000 * 113.69254 * 139.99190 * 22 21 20 44 44 H 1.09001 * 113.61613 * 220.01668 * 23 22 21 45 45 H 1.09000 * 113.61052 * 89.11462 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 3.3589 1.2633 0.7212 6 7 3.1597 0.8160 2.1063 7 6 4.4455 0.5355 2.7590 8 6 4.9853 -0.7804 2.2609 9 1 4.4686 -1.3139 1.4768 10 6 6.1386 -1.3033 2.8062 11 7 6.7674 -0.6539 3.7614 12 14 6.8080 -2.9341 2.1883 13 1 7.7464 -2.6898 1.0636 14 1 7.5252 -3.6242 3.2903 15 1 5.6845 -3.7847 1.7197 16 6 2.3848 1.8018 2.8716 17 6 1.8553 1.1520 4.1515 18 6 0.3395 0.9985 4.2909 19 6 1.0837 2.0415 5.1283 20 6 2.2178 1.7712 -1.4425 21 6 2.3078 3.2994 -1.5895 22 6 1.4688 3.1469 -2.8691 23 6 0.9164 1.8483 -2.2582 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 4.0242 0.5693 0.2075 28 1 3.8025 2.2589 0.7208 29 1 5.1532 1.3306 2.5244 30 1 4.3015 0.4840 3.8382 31 1 7.5790 -1.0215 4.1448 32 1 3.0247 2.6454 3.1302 33 1 1.5471 2.1526 2.2687 34 1 2.4817 0.3661 4.5736 35 1 -0.2807 1.3607 3.4709 36 1 -0.0315 0.1118 4.8051 37 1 1.2021 1.8407 6.1931 38 1 0.9537 3.0898 4.8593 39 1 3.0196 1.2345 -1.9494 40 1 1.7981 3.8452 -0.7955 41 1 3.3197 3.6617 -1.7714 42 1 2.0663 2.9876 -3.7667 43 1 0.7160 3.9252 -2.9946 44 1 0.8048 1.0391 -2.9799 45 1 0.0262 1.9975 -1.6471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595335790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:49 Heat of formation + Delta-G solvation = -15.519379 kcal Electronic energy + Delta-G solvation = -21626.462398 eV Core-core repulsion = 18644.918842 eV Total energy + Delta-G solvation = -2981.543556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71593 -39.04710 -37.65095 -36.79337 -34.62621 -31.44015 -29.46197 -27.32350 -27.15427 -26.40105 -25.43238 -23.25668 -23.07353 -22.03099 -20.84331 -20.34114 -18.58300 -17.58019 -17.06249 -16.85303 -16.47039 -16.17825 -16.02357 -15.48333 -14.93209 -14.85662 -14.43585 -14.17143 -13.91427 -13.61393 -13.45355 -13.24560 -12.97596 -12.84420 -12.65996 -12.59582 -12.34244 -12.30523 -12.25341 -12.00130 -11.83282 -11.44662 -11.33713 -11.17169 -11.04681 -11.00667 -10.76602 -10.56248 -10.03442 -8.89435 -8.17534 -6.26386 1.38643 1.40177 1.52654 2.41050 2.90233 2.99358 3.13227 3.30036 3.67343 3.81638 3.85580 3.92706 4.01512 4.05342 4.11424 4.23651 4.46078 4.48373 4.56412 4.60517 4.64100 4.67602 4.77232 4.78040 4.81517 4.85084 4.87924 4.91685 4.97784 5.05190 5.08897 5.10039 5.14862 5.19015 5.29176 5.30321 5.37198 5.42177 5.59486 5.69534 6.12328 6.41969 6.54990 6.73291 6.89592 7.42386 8.92682 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.006535 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.531599 B = 4283.873626 C = 5515.855218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.391 6.391 3 C 0.118 3.882 4 H 0.066 0.934 5 C 0.068 3.932 6 N -0.530 5.530 7 C 0.210 3.790 8 C -0.513 4.513 9 H 0.054 0.946 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.964 3.036 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.269 1.269 16 C 0.090 3.910 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.169 4.169 20 C -0.141 4.141 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.130 4.130 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.034 0.966 29 H -0.043 1.043 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.016 0.984 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 8.422 -8.659 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.310 6.310 3 C 0.060 3.940 4 H 0.083 0.917 5 C -0.060 4.060 6 N -0.253 5.253 7 C 0.084 3.916 8 C -0.551 4.551 9 H 0.072 0.928 10 C -0.196 4.196 11 N -0.576 5.576 12 Si 0.789 3.211 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.194 1.194 16 C -0.037 4.037 17 C -0.185 4.185 18 C -0.197 4.197 19 C -0.206 4.206 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.168 4.168 23 C -0.167 4.167 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.052 0.948 29 H -0.026 1.026 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.355 7.801 -8.558 19.232 hybrid contribution 1.391 -0.077 0.211 1.409 sum -13.964 7.725 -8.347 18.009 Atomic orbital electron populations 1.23043 0.80789 1.03012 1.00526 1.88012 1.20335 1.27697 1.94915 1.22086 0.93216 0.84715 0.93987 0.91660 1.22059 0.96788 0.97577 0.89612 1.61952 1.19415 1.42503 1.01464 1.19377 0.84482 0.94054 0.93677 1.21436 1.07991 1.05935 1.19783 0.92755 1.25847 0.97116 1.01338 0.95260 1.70081 1.19102 1.40754 1.27705 0.85460 0.78329 0.79321 0.77989 1.19787 1.20487 1.19397 1.21641 0.96786 0.91970 0.93349 1.22127 0.95405 1.02820 0.98109 1.22987 0.93008 1.00923 1.02753 1.23039 1.03474 0.96970 0.97103 1.23106 0.99997 0.97532 0.95409 1.22942 1.00956 0.94255 0.99030 1.22777 0.99462 0.97675 0.96844 1.22964 0.96364 0.98498 0.98871 0.94182 0.92007 0.89908 0.92758 0.94777 1.02583 0.97163 0.92790 0.96598 0.89939 0.90977 0.87806 0.88808 0.88443 0.87536 0.90222 0.89603 0.91635 0.89844 0.89933 0.91336 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.57 113.37 1.20 1.75 16 2 O -0.39 -13.60 10.16 -148.98 -1.51 -15.11 16 3 C 0.12 3.69 1.94 30.59 0.06 3.75 16 4 H 0.07 1.83 5.73 -2.39 -0.01 1.82 16 5 C 0.07 2.74 4.47 86.30 0.39 3.13 16 6 N -0.53 -24.05 4.24 -900.79 -3.82 -27.87 16 7 C 0.21 11.75 4.55 85.55 0.39 12.14 16 8 C -0.51 -30.79 8.62 25.60 0.22 -30.57 16 9 H 0.05 3.31 7.67 -2.91 -0.02 3.29 16 10 C 0.00 0.11 5.46 84.65 0.46 0.57 16 11 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 12 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 16 C 0.09 3.37 5.11 86.30 0.44 3.81 16 17 C -0.17 -5.95 5.58 -10.80 -0.06 -6.01 16 18 C -0.16 -4.37 10.18 30.62 0.31 -4.06 16 19 C -0.17 -4.52 10.25 30.62 0.31 -4.20 16 20 C -0.14 -3.62 3.36 -10.27 -0.03 -3.65 16 21 C -0.13 -2.79 7.63 31.12 0.24 -2.55 16 22 C -0.13 -2.19 8.08 31.12 0.25 -1.94 16 23 C -0.13 -2.53 6.18 31.12 0.19 -2.34 16 24 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 25 H 0.06 1.22 4.95 -2.39 -0.01 1.21 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 2.52 7.34 -2.39 -0.02 2.51 16 28 H 0.03 1.32 8.12 -2.39 -0.02 1.30 16 29 H -0.04 -2.61 8.00 -2.39 -0.02 -2.63 16 30 H 0.01 0.62 6.46 -2.39 -0.02 0.60 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 33 H 0.08 2.59 5.67 -2.38 -0.01 2.58 16 34 H 0.07 3.20 6.88 -2.39 -0.02 3.18 16 35 H 0.10 2.45 8.04 -2.39 -0.02 2.44 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 40 H 0.09 1.66 7.96 -2.39 -0.02 1.64 16 41 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.57 6.33 -2.39 -0.02 1.56 16 Total: -1.00 -68.88 351.39 2.28 -66.61 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.93 Total: 15.81 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.37 Total: -30.17 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.54 Total: -85.74 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.51 Total: -15.11 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -68.88 2.28 -66.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.086 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds