Wall clock time and date at job start Mon Mar 30 2020 08:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99978 * 2 1 4 4 H 1.08999 * 109.47337 * 30.00080 * 3 2 1 5 5 C 1.53001 * 109.47129 * 269.99979 * 3 2 1 6 6 N 1.46907 * 109.46802 * 66.26043 * 5 3 2 7 7 C 1.46844 * 111.00265 * 52.99573 * 6 5 3 8 8 C 1.53032 * 109.52029 * 185.83761 * 7 6 5 9 9 C 1.53112 * 109.28230 * 300.81816 * 8 7 6 10 10 C 1.50697 * 109.57955 * 177.59205 * 9 8 7 11 11 H 1.08002 * 120.00622 * 240.28909 * 10 9 8 12 12 C 1.37883 * 119.99943 * 60.28567 * 10 9 8 13 13 N 1.31519 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47333 * 90.00067 * 14 12 10 16 16 H 1.48506 * 109.46904 * 210.00131 * 14 12 10 17 17 H 1.48498 * 109.46943 * 329.99746 * 14 12 10 18 18 C 1.53122 * 109.15943 * 57.65798 * 9 8 7 19 19 C 1.46848 * 110.99746 * 177.20843 * 6 5 3 20 20 C 1.53001 * 109.47368 * 150.00096 * 3 2 1 21 21 C 1.53780 * 113.61241 * 39.13324 * 20 3 2 22 22 C 1.53962 * 87.01909 * 220.04913 * 21 20 3 23 23 C 1.53781 * 87.10839 * 25.36649 * 22 21 20 24 24 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46748 * 299.99873 * 1 2 3 26 26 H 1.08993 * 109.47204 * 60.00009 * 1 2 3 27 27 H 1.08993 * 109.47163 * 306.25923 * 5 3 2 28 28 H 1.08994 * 109.47223 * 186.25475 * 5 3 2 29 29 H 1.09003 * 109.46115 * 305.85597 * 7 6 5 30 30 H 1.09000 * 109.46108 * 65.81922 * 7 6 5 31 31 H 1.09002 * 109.50334 * 180.88059 * 8 7 6 32 32 H 1.09001 * 109.53941 * 60.78682 * 8 7 6 33 33 H 1.09001 * 109.52447 * 297.75439 * 9 8 7 34 34 H 0.96993 * 119.99623 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.50419 * 182.40455 * 18 9 8 36 36 H 1.08997 * 109.53803 * 62.30341 * 18 9 8 37 37 H 1.09004 * 109.46343 * 294.17425 * 19 6 5 38 38 H 1.08995 * 109.46301 * 54.15044 * 19 6 5 39 39 H 1.09000 * 112.85233 * 170.33612 * 20 3 2 40 40 H 1.09002 * 113.61632 * 334.57054 * 21 20 3 41 41 H 1.08999 * 113.61213 * 105.47604 * 21 20 3 42 42 H 1.08999 * 113.53510 * 270.80982 * 22 21 20 43 43 H 1.09006 * 113.73818 * 139.94596 * 22 21 20 44 44 H 1.09008 * 113.61125 * 220.09077 * 23 22 21 45 45 H 1.09001 * 113.61631 * 89.18581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 7 0.9120 1.9559 -2.0900 7 6 0.0480 2.8345 -1.2914 8 6 -1.3470 2.8872 -1.9183 9 6 -1.2375 3.4139 -3.3519 10 6 -2.6000 3.4128 -3.9957 11 1 -2.7768 2.8256 -4.8848 12 6 -3.6211 4.1615 -3.4498 13 7 -3.4057 4.8769 -2.3674 14 14 -5.3102 4.1597 -4.2474 15 1 -6.1321 3.0692 -3.6639 16 1 -5.9745 5.4652 -4.0030 17 1 -5.1669 3.9434 -5.7096 18 6 -0.2942 2.5088 -4.1491 19 6 1.0703 2.4670 -3.4575 20 6 3.3589 1.2633 0.7212 21 6 4.1773 -0.0042 0.4236 22 6 4.5679 -0.0046 1.9128 23 6 3.2651 0.7694 2.1746 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 2.7909 1.0215 -1.9876 28 1 2.7609 2.7163 -1.4446 29 1 -0.0248 2.4464 -0.2754 30 1 0.4734 3.8378 -1.2671 31 1 -1.9837 3.5518 -1.3342 32 1 -1.7794 1.8867 -1.9302 33 1 -0.8422 4.4296 -3.3376 34 1 -4.1239 5.4039 -1.9836 35 1 -0.1786 2.9029 -5.1587 36 1 -0.7089 1.5019 -4.1968 37 1 1.4910 3.4720 -3.4232 38 1 1.7399 1.8120 -4.0148 39 1 3.9276 2.1865 0.6097 40 1 3.5674 -0.8593 0.1320 41 1 5.0177 0.1667 -0.2491 42 1 5.4684 0.5712 2.1267 43 1 4.5837 -0.9976 2.3621 44 1 3.3702 1.5640 2.9134 45 1 2.4053 0.1263 2.3625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595423586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:41:48 Heat of formation + Delta-G solvation = -30.935985 kcal Electronic energy + Delta-G solvation = -21798.613684 eV Core-core repulsion = 18816.401614 eV Total energy + Delta-G solvation = -2982.212070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78556 -38.07207 -36.46531 -33.89372 -31.65614 -29.91016 -29.48506 -26.21798 -25.86362 -25.48230 -24.05205 -22.54026 -21.72532 -20.31752 -19.31341 -18.62025 -16.48044 -16.24663 -16.01754 -15.50985 -14.91160 -14.66400 -14.25348 -14.09374 -13.42635 -13.15433 -13.04019 -12.72593 -12.43487 -12.31216 -12.22720 -12.11750 -11.87023 -11.47250 -11.21977 -10.95185 -10.74794 -10.70102 -10.53720 -10.43346 -10.25763 -10.21336 -9.99077 -9.91804 -9.45275 -9.15298 -8.94539 -8.65376 -8.28824 -7.68819 -5.97141 -4.02279 3.31464 3.38211 3.41640 4.03455 4.31180 4.45608 4.60805 4.70891 4.82718 4.86443 5.31709 5.34692 5.38680 5.48320 5.64227 5.65943 5.69565 5.73536 5.82140 5.85126 5.87179 5.90143 5.97035 6.06361 6.08084 6.19894 6.21491 6.24644 6.32633 6.39351 6.55187 6.58551 6.63886 6.86861 7.08917 7.16527 7.42793 7.52667 7.62498 7.70281 7.83592 8.04875 8.15487 8.48770 9.01478 9.62151 11.09035 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.004259 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.125850 B = 6572.163469 C = 6833.117864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.098 3.902 4 H 0.065 0.935 5 C 0.035 3.965 6 N -0.531 5.531 7 C 0.045 3.955 8 C -0.103 4.103 9 C 0.048 3.952 10 C -0.510 4.510 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.106 4.106 19 C 0.061 3.939 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.132 4.132 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.023 -7.182 7.268 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.040 3.960 4 H 0.083 0.917 5 C -0.093 4.093 6 N -0.256 5.256 7 C -0.082 4.082 8 C -0.141 4.141 9 C 0.030 3.970 10 C -0.548 4.548 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.066 4.066 20 C -0.131 4.131 21 C -0.164 4.164 22 C -0.181 4.181 23 C -0.169 4.169 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.804 -7.675 7.346 16.638 hybrid contribution -0.739 1.170 -0.326 1.422 sum 12.065 -6.505 7.020 15.400 Atomic orbital electron populations 1.23054 0.80741 1.02074 1.01676 1.87758 1.20041 1.26597 1.95029 1.21994 0.94087 0.85611 0.94318 0.91715 1.22630 0.91959 0.99332 0.95413 1.62059 1.11565 1.49389 1.02611 1.22483 0.96306 0.93054 0.96332 1.21660 0.92054 1.00718 0.99654 1.18675 0.93542 0.93521 0.91310 1.21218 0.95213 1.27238 1.11117 0.92763 1.24967 0.98691 0.95314 0.95024 1.69877 1.32490 1.29838 1.20985 0.86639 0.84572 0.77240 0.79805 1.20733 1.21351 1.19997 1.21672 0.93620 1.01097 0.97981 1.22102 0.98936 0.96579 0.89020 1.22682 0.95412 0.98872 0.96120 1.22839 0.99032 0.98684 0.95807 1.22828 0.97469 1.00391 0.97403 1.22871 0.98442 0.99798 0.95801 0.90855 0.95277 0.90126 0.90580 0.95112 0.92332 0.96045 0.89035 0.93862 0.96211 0.93136 0.93251 0.92503 0.95921 0.92479 0.88706 0.88782 0.92166 0.90745 0.91743 0.92040 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.68 101.05 0.98 1.29 16 2 O -0.38 -5.58 8.45 -35.23 -0.30 -5.88 16 3 C 0.10 1.35 2.15 -26.73 -0.06 1.29 16 4 H 0.07 0.95 5.57 -51.93 -0.29 0.66 16 5 C 0.04 0.52 4.75 -3.82 -0.02 0.51 16 6 N -0.53 -9.39 3.42 -234.67 -0.80 -10.19 16 7 C 0.05 0.87 3.96 -3.84 -0.02 0.86 16 8 C -0.10 -2.38 5.06 -26.66 -0.13 -2.51 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 13 N -0.89 -25.28 11.37 55.43 0.63 -24.65 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 19 C 0.06 1.12 5.46 -3.83 -0.02 1.09 16 20 C -0.11 -1.27 3.58 -89.81 -0.32 -1.60 16 21 C -0.13 -1.36 7.49 -25.82 -0.19 -1.55 16 22 C -0.14 -1.36 8.09 -25.82 -0.21 -1.57 16 23 C -0.13 -1.38 7.54 -25.92 -0.20 -1.58 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.03 0.40 8.01 -51.92 -0.42 -0.01 16 26 H 0.08 1.38 4.66 -51.93 -0.24 1.14 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.04 4.41 -51.93 -0.23 0.81 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.37 6.18 -51.93 -0.32 2.05 16 32 H 0.04 1.02 7.61 -51.93 -0.40 0.62 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.15 7.03 -51.93 -0.36 0.78 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.09 0.98 7.72 -51.93 -0.40 0.58 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -27.66 334.40 -9.48 -37.14 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.12 Total: 0.12 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.92 Total: -17.82 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.17 Total: -34.85 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.30 Total: -5.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.66 -9.48 -37.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595423586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.205 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds