Wall clock time and date at job start Mon Mar 30 2020 08:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99978 * 2 1 4 4 H 1.08999 * 109.47337 * 30.00080 * 3 2 1 5 5 C 1.53001 * 109.47129 * 269.99979 * 3 2 1 6 6 N 1.46907 * 109.46802 * 66.26043 * 5 3 2 7 7 C 1.46844 * 111.00265 * 52.99573 * 6 5 3 8 8 C 1.53032 * 109.52029 * 185.83761 * 7 6 5 9 9 C 1.53112 * 109.28230 * 300.81816 * 8 7 6 10 10 C 1.50697 * 109.57955 * 177.59205 * 9 8 7 11 11 H 1.08002 * 120.00622 * 240.28909 * 10 9 8 12 12 C 1.37883 * 119.99943 * 60.28567 * 10 9 8 13 13 N 1.31519 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47333 * 90.00067 * 14 12 10 16 16 H 1.48506 * 109.46904 * 210.00131 * 14 12 10 17 17 H 1.48498 * 109.46943 * 329.99746 * 14 12 10 18 18 C 1.53122 * 109.15943 * 57.65798 * 9 8 7 19 19 C 1.46848 * 110.99746 * 177.20843 * 6 5 3 20 20 C 1.53001 * 109.47368 * 150.00096 * 3 2 1 21 21 C 1.53780 * 113.61241 * 39.13324 * 20 3 2 22 22 C 1.53962 * 87.01909 * 220.04913 * 21 20 3 23 23 C 1.53781 * 87.10839 * 25.36649 * 22 21 20 24 24 H 1.08999 * 109.46931 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46748 * 299.99873 * 1 2 3 26 26 H 1.08993 * 109.47204 * 60.00009 * 1 2 3 27 27 H 1.08993 * 109.47163 * 306.25923 * 5 3 2 28 28 H 1.08994 * 109.47223 * 186.25475 * 5 3 2 29 29 H 1.09003 * 109.46115 * 305.85597 * 7 6 5 30 30 H 1.09000 * 109.46108 * 65.81922 * 7 6 5 31 31 H 1.09002 * 109.50334 * 180.88059 * 8 7 6 32 32 H 1.09001 * 109.53941 * 60.78682 * 8 7 6 33 33 H 1.09001 * 109.52447 * 297.75439 * 9 8 7 34 34 H 0.96993 * 119.99623 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.50419 * 182.40455 * 18 9 8 36 36 H 1.08997 * 109.53803 * 62.30341 * 18 9 8 37 37 H 1.09004 * 109.46343 * 294.17425 * 19 6 5 38 38 H 1.08995 * 109.46301 * 54.15044 * 19 6 5 39 39 H 1.09000 * 112.85233 * 170.33612 * 20 3 2 40 40 H 1.09002 * 113.61632 * 334.57054 * 21 20 3 41 41 H 1.08999 * 113.61213 * 105.47604 * 21 20 3 42 42 H 1.08999 * 113.53510 * 270.80982 * 22 21 20 43 43 H 1.09006 * 113.73818 * 139.94596 * 22 21 20 44 44 H 1.09008 * 113.61125 * 220.09077 * 23 22 21 45 45 H 1.09001 * 113.61631 * 89.18581 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 7 0.9120 1.9559 -2.0900 7 6 0.0480 2.8345 -1.2914 8 6 -1.3470 2.8872 -1.9183 9 6 -1.2375 3.4139 -3.3519 10 6 -2.6000 3.4128 -3.9957 11 1 -2.7768 2.8256 -4.8848 12 6 -3.6211 4.1615 -3.4498 13 7 -3.4057 4.8769 -2.3674 14 14 -5.3102 4.1597 -4.2474 15 1 -6.1321 3.0692 -3.6639 16 1 -5.9745 5.4652 -4.0030 17 1 -5.1669 3.9434 -5.7096 18 6 -0.2942 2.5088 -4.1491 19 6 1.0703 2.4670 -3.4575 20 6 3.3589 1.2633 0.7212 21 6 4.1773 -0.0042 0.4236 22 6 4.5679 -0.0046 1.9128 23 6 3.2651 0.7694 2.1746 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 2.7909 1.0215 -1.9876 28 1 2.7609 2.7163 -1.4446 29 1 -0.0248 2.4464 -0.2754 30 1 0.4734 3.8378 -1.2671 31 1 -1.9837 3.5518 -1.3342 32 1 -1.7794 1.8867 -1.9302 33 1 -0.8422 4.4296 -3.3376 34 1 -4.1239 5.4039 -1.9836 35 1 -0.1786 2.9029 -5.1587 36 1 -0.7089 1.5019 -4.1968 37 1 1.4910 3.4720 -3.4232 38 1 1.7399 1.8120 -4.0148 39 1 3.9276 2.1865 0.6097 40 1 3.5674 -0.8593 0.1320 41 1 5.0177 0.1667 -0.2491 42 1 5.4684 0.5712 2.1267 43 1 4.5837 -0.9976 2.3621 44 1 3.3702 1.5640 2.9134 45 1 2.4053 0.1263 2.3625 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595423586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:41:47 Heat of formation + Delta-G solvation = -45.372385 kcal Electronic energy + Delta-G solvation = -21799.239693 eV Core-core repulsion = 18816.401614 eV Total energy + Delta-G solvation = -2982.838079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91960 -39.40233 -37.62953 -35.67792 -33.44630 -31.57417 -30.83118 -27.86352 -26.99357 -26.44244 -25.42629 -24.07889 -23.31426 -21.62670 -20.44898 -20.11243 -18.45594 -17.42383 -17.23003 -16.71427 -16.50776 -15.97381 -15.64274 -15.49720 -14.88654 -14.74294 -14.36856 -14.27326 -13.96711 -13.67394 -13.29659 -13.21302 -13.11441 -12.96224 -12.80167 -12.54524 -12.38104 -12.20082 -12.00317 -11.86764 -11.84704 -11.36897 -11.34048 -11.13246 -10.93714 -10.80960 -10.61094 -10.41101 -10.21933 -9.12260 -8.08083 -6.21199 1.40900 1.41778 1.51666 2.43798 2.94600 2.97703 3.18984 3.64770 3.87867 3.92099 4.02650 4.17690 4.20899 4.24381 4.31659 4.41029 4.53816 4.54676 4.61920 4.66267 4.74640 4.80936 4.85490 4.87682 4.94707 4.98251 5.01421 5.06133 5.08611 5.14505 5.14945 5.20318 5.24609 5.36467 5.43458 5.55473 5.62815 5.72917 5.99999 6.01793 6.27024 6.31997 6.40528 6.42006 6.90085 7.46575 8.96429 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.004259 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.125850 B = 6572.163469 C = 6833.117864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.380 6.380 3 C 0.099 3.901 4 H 0.054 0.946 5 C 0.037 3.963 6 N -0.535 5.535 7 C 0.062 3.938 8 C -0.091 4.091 9 C 0.044 3.956 10 C -0.533 4.533 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.917 5.917 14 Si 0.952 3.048 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.098 4.098 19 C 0.067 3.933 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.133 4.133 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.033 0.967 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.021 0.979 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.343 -8.022 7.568 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.298 6.298 3 C 0.041 3.959 4 H 0.072 0.928 5 C -0.090 4.090 6 N -0.260 5.260 7 C -0.066 4.066 8 C -0.129 4.129 9 C 0.026 3.974 10 C -0.571 4.571 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.136 4.136 19 C -0.061 4.061 20 C -0.131 4.131 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.170 4.170 24 H 0.105 0.895 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.138 -8.525 7.643 18.193 hybrid contribution -1.147 1.432 -0.427 1.884 sum 12.992 -7.093 7.216 16.467 Atomic orbital electron populations 1.23000 0.80899 1.02748 1.00682 1.87769 1.19879 1.27216 1.94965 1.22053 0.95248 0.84916 0.93732 0.92779 1.22701 0.90335 1.00056 0.95943 1.62019 1.13159 1.48459 1.02369 1.22203 0.94305 0.93040 0.97041 1.21390 0.94048 0.98953 0.98551 1.18655 0.93335 0.92625 0.92825 1.21579 0.96781 1.27440 1.11297 0.93193 1.25717 1.02249 0.94981 0.95523 1.70013 1.33480 1.30244 1.21951 0.85653 0.80193 0.77341 0.79048 1.20122 1.20958 1.19444 1.21530 0.94549 0.99615 0.97929 1.22035 0.97367 0.97294 0.89414 1.22751 0.94114 0.99846 0.96421 1.22797 0.98970 0.97580 0.97011 1.22812 0.97418 1.00737 0.96200 1.22858 0.98676 1.00042 0.95447 0.89480 0.94782 0.92525 0.89714 0.94140 0.90716 0.97111 0.92191 0.94850 0.99533 0.93115 0.92980 0.93060 0.96111 0.89736 0.87414 0.90402 0.91173 0.89194 0.91311 0.91081 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.68 113.37 1.10 1.76 16 2 O -0.38 -10.74 8.45 -148.98 -1.26 -12.00 16 3 C 0.10 2.55 2.15 30.59 0.07 2.62 16 4 H 0.05 1.52 5.57 -2.39 -0.01 1.51 16 5 C 0.04 1.04 4.75 86.30 0.41 1.45 16 6 N -0.54 -18.36 3.42 -896.37 -3.07 -21.43 16 7 C 0.06 2.38 3.96 86.32 0.34 2.72 16 8 C -0.09 -4.34 5.06 30.64 0.16 -4.18 16 9 C 0.04 2.25 2.16 -11.46 -0.02 2.22 16 10 C -0.53 -29.84 8.56 25.60 0.22 -29.62 16 11 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 12 C 0.01 0.77 5.31 84.66 0.45 1.21 16 13 N -0.92 -53.21 11.37 21.45 0.24 -52.97 16 14 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 C -0.10 -4.15 5.32 30.65 0.16 -3.99 16 19 C 0.07 2.34 5.46 86.32 0.47 2.81 16 20 C -0.11 -2.29 3.58 -10.27 -0.04 -2.33 16 21 C -0.13 -2.40 7.49 31.18 0.23 -2.17 16 22 C -0.13 -2.17 8.09 31.18 0.25 -1.92 16 23 C -0.13 -2.50 7.54 31.12 0.23 -2.27 16 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.03 0.92 8.01 -2.38 -0.02 0.90 16 26 H 0.06 1.91 4.66 -2.39 -0.01 1.90 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 2.64 4.41 -2.39 -0.01 2.63 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 3.23 6.18 -2.39 -0.01 3.21 16 32 H 0.03 1.61 7.61 -2.39 -0.02 1.59 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.08 1.76 7.03 -2.39 -0.02 1.74 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.07 1.57 7.72 -2.39 -0.02 1.55 16 Total: -1.00 -59.80 334.40 2.91 -56.89 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.93 Total: 15.16 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.03 Total: -31.68 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.82 Total: -74.40 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.26 Total: -12.00 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.80 2.91 -56.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595423586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.517 kcal (2) G-P(sol) polarization free energy of solvation -59.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds