Wall clock time and date at job start Mon Mar 30 2020 08:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99952 * 2 1 4 4 N 1.46897 * 109.47450 * 125.00077 * 3 2 1 5 5 C 1.46896 * 110.99696 * 290.46723 * 4 3 2 6 6 C 1.50705 * 109.46992 * 160.98163 * 5 4 3 7 7 H 1.07999 * 120.00171 * 4.53018 * 6 5 4 8 8 C 1.37882 * 119.99775 * 184.53237 * 6 5 4 9 9 N 1.31511 * 120.00089 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99565 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47524 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47024 * 119.99885 * 10 8 6 13 13 H 1.48497 * 109.47279 * 239.99719 * 10 8 6 14 14 C 1.46899 * 111.00270 * 166.51222 * 4 3 2 15 15 C 1.53000 * 109.47274 * 293.95642 * 14 4 3 16 16 H 1.09004 * 109.47051 * 59.99622 * 15 14 4 17 17 O 1.42905 * 109.46636 * 299.99724 * 15 14 4 18 18 C 1.42900 * 113.99742 * 99.04547 * 17 15 14 19 19 C 1.53001 * 109.47077 * 179.97438 * 15 14 4 20 20 C 1.54263 * 110.03070 * 294.68906 * 19 15 14 21 21 C 1.54887 * 104.19808 * 217.10828 * 20 19 15 22 22 C 1.54893 * 102.75081 * 37.94276 * 21 20 19 23 23 C 1.53876 * 110.03069 * 177.52831 * 19 15 14 24 24 H 1.08000 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99784 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99860 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47351 * 4.99199 * 3 2 1 28 28 H 1.09012 * 109.46699 * 244.99810 * 3 2 1 29 29 H 1.08999 * 109.47400 * 280.97739 * 5 4 3 30 30 H 1.09003 * 109.47371 * 40.97886 * 5 4 3 31 31 H 0.97005 * 119.99758 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47523 * 173.94899 * 14 4 3 33 33 H 1.09004 * 109.46931 * 53.95013 * 14 4 3 34 34 H 1.08999 * 109.47753 * 53.21004 * 18 17 15 35 35 H 1.08997 * 109.47142 * 293.20263 * 18 17 15 36 36 H 1.09002 * 109.46985 * 173.20909 * 18 17 15 37 37 H 1.08995 * 110.01719 * 56.13636 * 19 15 14 38 38 H 1.08999 * 110.49090 * 335.79021 * 20 19 15 39 39 H 1.09003 * 110.48567 * 98.43241 * 20 19 15 40 40 H 1.09007 * 110.75371 * 279.63193 * 21 20 19 41 41 H 1.08997 * 110.91680 * 156.33509 * 21 20 19 42 42 H 1.08995 * 110.48929 * 203.38476 * 22 21 20 43 43 H 1.08993 * 110.59372 * 80.78951 * 22 21 20 44 44 H 1.09005 * 110.02931 * 238.57045 * 23 19 15 45 45 H 1.09003 * 110.02976 * 359.97438 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3320 1.1345 5 6 2.2725 1.4305 2.4089 6 6 3.1749 0.9941 3.5342 7 1 4.2066 0.7454 3.3336 8 6 2.6834 0.9121 4.8198 9 7 1.4273 1.2153 5.0641 10 14 3.8018 0.3704 6.2145 11 1 5.1585 0.0892 5.6803 12 1 3.8845 1.4503 7.2305 13 1 3.2517 -0.8581 6.8415 14 6 3.9654 2.4270 0.9934 15 6 4.8671 2.1579 -0.2130 16 1 4.2580 2.0933 -1.1146 17 8 5.5652 0.9259 -0.0203 18 6 4.9800 -0.1862 -0.7007 19 6 5.8760 3.2987 -0.3602 20 6 5.1423 4.6122 -0.7012 21 6 6.0895 5.3296 -1.6946 22 6 6.6423 4.1594 -2.5456 23 6 6.8296 3.0108 -1.5330 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4025 -0.9315 29 1 1.9621 2.4626 2.5717 30 1 1.3931 0.7872 2.3780 31 1 1.0814 1.1573 5.9686 32 1 4.5744 2.4917 1.8950 33 1 3.4329 3.3667 0.8465 34 1 4.8542 0.0583 -1.7554 35 1 4.0081 -0.4105 -0.2612 36 1 5.6315 -1.0548 -0.6043 37 1 6.4438 3.4160 0.5627 38 1 4.1827 4.4017 -1.1734 39 1 5.0028 5.2152 0.1961 40 1 6.8958 5.8351 -1.1629 41 1 5.5387 6.0340 -2.3178 42 1 7.5975 4.4319 -2.9943 43 1 5.9268 3.8749 -3.3170 44 1 7.8605 2.9893 -1.1793 45 1 6.5740 2.0582 -1.9969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595501512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:43 Heat of formation + Delta-G solvation = -36.950996 kcal Electronic energy + Delta-G solvation = -21711.880476 eV Core-core repulsion = 18729.407576 eV Total energy + Delta-G solvation = -2982.472901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24451 -37.13381 -36.04273 -33.16068 -32.34630 -30.61201 -28.65735 -27.45976 -26.70220 -25.72171 -24.13900 -22.00124 -20.75553 -20.13880 -19.51533 -19.15595 -16.46740 -16.24067 -15.81745 -15.32980 -14.96585 -14.74416 -14.31593 -14.07550 -13.63601 -13.46702 -13.27996 -12.98939 -12.58973 -12.17603 -11.84239 -11.65028 -11.44141 -11.19073 -11.08082 -11.02938 -10.92499 -10.77295 -10.65200 -10.62785 -10.54417 -10.47428 -10.34711 -10.05195 -9.86594 -9.16739 -8.95450 -8.74480 -8.34204 -7.19396 -5.95638 -3.95543 2.77481 3.35440 3.42825 3.49608 4.17869 4.48521 4.63432 4.68042 4.86166 4.99237 5.34289 5.39596 5.44882 5.47934 5.53155 5.57501 5.65040 5.66061 5.69372 5.76107 5.77766 5.86613 5.93582 5.96720 5.99081 6.07808 6.11552 6.19227 6.24042 6.30504 6.34986 6.37435 6.44742 6.52298 6.73073 7.08017 7.21046 7.29909 7.39128 7.76955 7.90383 8.17237 8.24853 8.60584 9.13667 9.68153 11.15151 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.005859 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.616192 B = 4777.876083 C = 5557.460125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C 0.072 3.928 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.498 4.498 7 H 0.065 0.935 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.045 3.955 15 C 0.103 3.897 16 H 0.052 0.948 17 O -0.370 6.370 18 C 0.034 3.966 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.026 0.974 28 H 0.064 0.936 29 H -0.014 1.014 30 H 0.037 0.963 31 H 0.259 0.741 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 3.958 -15.292 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.141 4.141 3 C -0.056 4.056 4 N -0.249 5.249 5 C 0.068 3.932 6 C -0.537 4.537 7 H 0.083 0.917 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.084 4.084 15 C 0.044 3.956 16 H 0.070 0.930 17 O -0.288 6.288 18 C -0.062 4.062 19 C -0.112 4.112 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.150 4.150 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.004 0.996 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.428 3.510 -15.016 16.707 hybrid contribution -0.320 0.382 0.822 0.961 sum 6.109 3.891 -14.194 15.935 Atomic orbital electron populations 1.23689 0.95998 1.01179 1.03281 1.22836 0.95386 0.98607 0.97319 1.21284 0.94587 0.94297 0.95396 1.62139 1.16109 1.43767 1.02884 1.19761 0.94063 0.95226 0.84133 1.21230 0.97455 1.43775 0.91195 0.91686 1.24976 0.95074 0.95831 0.98827 1.69976 1.13820 1.49758 1.20606 0.86487 0.81061 0.78121 0.82059 1.19592 1.21253 1.21146 1.22526 0.94763 0.91887 0.99187 1.22276 0.91899 0.84435 0.96970 0.92987 1.87834 1.51833 1.16284 1.72857 1.22815 1.00306 0.89071 0.94058 1.21901 0.96337 0.93642 0.99294 1.22397 0.98353 0.95526 0.99201 1.22488 0.98898 0.97232 0.97553 1.22392 1.00459 0.95690 0.97842 1.22083 0.99341 0.98235 0.95344 0.89191 0.88907 0.87346 0.95575 0.91772 0.99648 0.94515 0.93162 0.89301 0.95515 0.95892 0.91695 0.91053 0.90193 0.91643 0.91302 0.91588 0.91875 0.92091 0.92014 0.91960 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 14.32 29.01 0.42 -2.86 16 2 C -0.12 -2.13 8.27 -36.03 -0.30 -2.42 16 3 C 0.07 1.29 4.36 -4.98 -0.02 1.27 16 4 N -0.52 -11.10 3.23 -237.52 -0.77 -11.87 16 5 C 0.19 5.04 4.60 -4.98 -0.02 5.02 16 6 C -0.50 -14.20 8.59 -34.44 -0.30 -14.49 16 7 H 0.06 1.88 7.62 -52.49 -0.40 1.48 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 10 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.04 0.86 4.31 -3.82 -0.02 0.85 16 15 C 0.10 1.63 1.39 -26.73 -0.04 1.59 16 16 H 0.05 0.78 5.69 -51.93 -0.30 0.49 16 17 O -0.37 -6.48 9.56 -35.23 -0.34 -6.82 16 18 C 0.03 0.52 10.42 101.05 1.05 1.57 16 19 C -0.09 -1.26 2.71 -89.50 -0.24 -1.50 16 20 C -0.12 -1.39 5.41 -25.08 -0.14 -1.53 16 21 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 22 C -0.13 -1.26 6.83 -25.07 -0.17 -1.43 16 23 C -0.11 -1.33 6.20 -25.61 -0.16 -1.49 16 24 H 0.09 1.41 7.84 -52.49 -0.41 1.00 16 25 H 0.09 1.34 8.06 -52.49 -0.42 0.91 16 26 H 0.11 1.84 7.58 -52.49 -0.40 1.44 16 27 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 28 H 0.06 1.01 5.78 -51.92 -0.30 0.71 16 29 H -0.01 -0.40 8.01 -51.93 -0.42 -0.82 16 30 H 0.04 1.03 7.02 -51.93 -0.36 0.67 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.09 1.94 7.27 -51.93 -0.38 1.57 16 33 H 0.03 0.50 7.40 -51.93 -0.38 0.11 16 34 H 0.02 0.30 7.95 -51.93 -0.41 -0.12 16 35 H 0.06 1.09 5.37 -51.93 -0.28 0.81 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.81 7.34 -51.93 -0.38 0.43 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -30.26 348.60 -8.50 -38.76 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.17 Total: -0.65 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.20 Total: -15.39 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.03 Total: -38.31 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.34 Total: -6.82 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.26 -8.50 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.813 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds