Wall clock time and date at job start Mon Mar 30 2020 08:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99952 * 2 1 4 4 N 1.46897 * 109.47450 * 125.00077 * 3 2 1 5 5 C 1.46896 * 110.99696 * 290.46723 * 4 3 2 6 6 C 1.50705 * 109.46992 * 160.98163 * 5 4 3 7 7 H 1.07999 * 120.00171 * 4.53018 * 6 5 4 8 8 C 1.37882 * 119.99775 * 184.53237 * 6 5 4 9 9 N 1.31511 * 120.00089 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99565 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47524 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47024 * 119.99885 * 10 8 6 13 13 H 1.48497 * 109.47279 * 239.99719 * 10 8 6 14 14 C 1.46899 * 111.00270 * 166.51222 * 4 3 2 15 15 C 1.53000 * 109.47274 * 293.95642 * 14 4 3 16 16 H 1.09004 * 109.47051 * 59.99622 * 15 14 4 17 17 O 1.42905 * 109.46636 * 299.99724 * 15 14 4 18 18 C 1.42900 * 113.99742 * 99.04547 * 17 15 14 19 19 C 1.53001 * 109.47077 * 179.97438 * 15 14 4 20 20 C 1.54263 * 110.03070 * 294.68906 * 19 15 14 21 21 C 1.54887 * 104.19808 * 217.10828 * 20 19 15 22 22 C 1.54893 * 102.75081 * 37.94276 * 21 20 19 23 23 C 1.53876 * 110.03069 * 177.52831 * 19 15 14 24 24 H 1.08000 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99784 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99860 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47351 * 4.99199 * 3 2 1 28 28 H 1.09012 * 109.46699 * 244.99810 * 3 2 1 29 29 H 1.08999 * 109.47400 * 280.97739 * 5 4 3 30 30 H 1.09003 * 109.47371 * 40.97886 * 5 4 3 31 31 H 0.97005 * 119.99758 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47523 * 173.94899 * 14 4 3 33 33 H 1.09004 * 109.46931 * 53.95013 * 14 4 3 34 34 H 1.08999 * 109.47753 * 53.21004 * 18 17 15 35 35 H 1.08997 * 109.47142 * 293.20263 * 18 17 15 36 36 H 1.09002 * 109.46985 * 173.20909 * 18 17 15 37 37 H 1.08995 * 110.01719 * 56.13636 * 19 15 14 38 38 H 1.08999 * 110.49090 * 335.79021 * 20 19 15 39 39 H 1.09003 * 110.48567 * 98.43241 * 20 19 15 40 40 H 1.09007 * 110.75371 * 279.63193 * 21 20 19 41 41 H 1.08997 * 110.91680 * 156.33509 * 21 20 19 42 42 H 1.08995 * 110.48929 * 203.38476 * 22 21 20 43 43 H 1.08993 * 110.59372 * 80.78951 * 22 21 20 44 44 H 1.09005 * 110.02931 * 238.57045 * 23 19 15 45 45 H 1.09003 * 110.02976 * 359.97438 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3320 1.1345 5 6 2.2725 1.4305 2.4089 6 6 3.1749 0.9941 3.5342 7 1 4.2066 0.7454 3.3336 8 6 2.6834 0.9121 4.8198 9 7 1.4273 1.2153 5.0641 10 14 3.8018 0.3704 6.2145 11 1 5.1585 0.0892 5.6803 12 1 3.8845 1.4503 7.2305 13 1 3.2517 -0.8581 6.8415 14 6 3.9654 2.4270 0.9934 15 6 4.8671 2.1579 -0.2130 16 1 4.2580 2.0933 -1.1146 17 8 5.5652 0.9259 -0.0203 18 6 4.9800 -0.1862 -0.7007 19 6 5.8760 3.2987 -0.3602 20 6 5.1423 4.6122 -0.7012 21 6 6.0895 5.3296 -1.6946 22 6 6.6423 4.1594 -2.5456 23 6 6.8296 3.0108 -1.5330 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4025 -0.9315 29 1 1.9621 2.4626 2.5717 30 1 1.3931 0.7872 2.3780 31 1 1.0814 1.1573 5.9686 32 1 4.5744 2.4917 1.8950 33 1 3.4329 3.3667 0.8465 34 1 4.8542 0.0583 -1.7554 35 1 4.0081 -0.4105 -0.2612 36 1 5.6315 -1.0548 -0.6043 37 1 6.4438 3.4160 0.5627 38 1 4.1827 4.4017 -1.1734 39 1 5.0028 5.2152 0.1961 40 1 6.8958 5.8351 -1.1629 41 1 5.5387 6.0340 -2.3178 42 1 7.5975 4.4319 -2.9943 43 1 5.9268 3.8749 -3.3170 44 1 7.8605 2.9893 -1.1793 45 1 6.5740 2.0582 -1.9969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595501512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:42 Heat of formation + Delta-G solvation = -54.040933 kcal Electronic energy + Delta-G solvation = -21712.621552 eV Core-core repulsion = 18729.407576 eV Total energy + Delta-G solvation = -2983.213976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49935 -38.43861 -37.41000 -34.98133 -34.10765 -31.90135 -29.60943 -29.35296 -27.91588 -27.03175 -25.91551 -23.63418 -22.00232 -21.34219 -20.68367 -20.49086 -18.53478 -17.55660 -17.18997 -16.63781 -16.47610 -16.03422 -16.00801 -15.35790 -14.99503 -14.91418 -14.59817 -14.17892 -14.08468 -13.88200 -13.36557 -13.26966 -12.91793 -12.68454 -12.56869 -12.55978 -12.13312 -12.02501 -11.95265 -11.89356 -11.82091 -11.73226 -11.58672 -11.43302 -11.31745 -11.16823 -10.61746 -10.29172 -10.13678 -8.94920 -8.18436 -6.26893 1.38380 1.38920 1.42405 1.53518 2.40811 2.97942 3.12172 3.27170 3.72305 3.79125 3.97598 4.08984 4.11575 4.24179 4.27972 4.45114 4.53842 4.58323 4.59964 4.63424 4.71019 4.73465 4.76836 4.85931 4.88379 4.89782 5.00183 5.04606 5.12358 5.14437 5.18271 5.20295 5.29975 5.31249 5.39207 5.50633 5.52792 5.66628 5.74167 5.87137 6.11652 6.38075 6.49487 6.67336 6.89015 7.41907 8.92122 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.005859 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.616192 B = 4777.876083 C = 5557.460125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.076 3.924 4 N -0.528 5.528 5 C 0.212 3.788 6 C -0.512 4.512 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.048 3.952 15 C 0.113 3.887 16 H 0.067 0.933 17 O -0.392 6.392 18 C 0.031 3.969 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.109 4.109 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.020 0.980 28 H 0.090 0.910 29 H -0.045 1.045 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 3.930 -16.746 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C -0.051 4.051 4 N -0.251 5.251 5 C 0.085 3.915 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.203 1.203 14 C -0.081 4.081 15 C 0.055 3.945 16 H 0.085 0.915 17 O -0.311 6.311 18 C -0.065 4.065 19 C -0.112 4.112 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.147 4.147 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.038 0.962 28 H 0.108 0.892 29 H -0.028 1.028 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.358 3.483 -16.493 18.392 hybrid contribution -0.658 0.383 1.257 1.470 sum 6.700 3.866 -15.236 17.087 Atomic orbital electron populations 1.23907 0.95735 1.02231 1.01275 1.22866 0.95922 0.98303 0.99134 1.21333 0.94238 0.94639 0.94930 1.62043 1.16466 1.44648 1.01989 1.19356 0.93264 0.92507 0.86338 1.21448 0.97254 1.43923 0.92456 0.92730 1.25822 0.96523 0.95704 1.01402 1.70085 1.15472 1.50536 1.21432 0.85427 0.79041 0.77989 0.78735 1.19277 1.20371 1.20257 1.22528 0.94463 0.91603 0.99489 1.22229 0.92019 0.84856 0.95370 0.91501 1.87819 1.52337 1.17210 1.73686 1.22913 0.99518 0.88921 0.95175 1.21910 0.96215 0.93572 0.99548 1.22406 0.98794 0.94776 0.99619 1.22479 0.98606 0.97406 0.97144 1.22378 1.01538 0.94550 0.97342 1.22050 0.98698 0.98973 0.94967 0.89015 0.86994 0.87119 0.96189 0.89196 1.02778 0.96807 0.92820 0.92794 0.95158 0.93266 0.93543 0.89860 0.91979 0.91557 0.92063 0.91192 0.90325 0.90514 0.91271 0.91884 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.06 14.32 67.78 0.97 -5.09 16 2 C -0.14 -4.91 8.27 25.64 0.21 -4.69 16 3 C 0.08 2.70 4.36 85.56 0.37 3.08 16 4 N -0.53 -22.86 3.23 -905.36 -2.93 -25.78 16 5 C 0.21 11.49 4.60 85.56 0.39 11.89 16 6 C -0.51 -30.09 8.59 25.60 0.22 -29.87 16 7 H 0.05 3.26 7.62 -2.91 -0.02 3.23 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.05 1.88 4.31 86.30 0.37 2.25 16 15 C 0.11 3.54 1.39 30.59 0.04 3.59 16 16 H 0.07 1.89 5.69 -2.39 -0.01 1.87 16 17 O -0.39 -13.53 9.56 -148.98 -1.42 -14.96 16 18 C 0.03 0.90 10.42 113.37 1.18 2.08 16 19 C -0.09 -2.47 2.71 -10.07 -0.03 -2.50 16 20 C -0.12 -2.68 5.41 31.67 0.17 -2.51 16 21 C -0.12 -2.08 6.91 31.89 0.22 -1.86 16 22 C -0.12 -2.05 6.83 31.67 0.22 -1.83 16 23 C -0.11 -2.39 6.20 31.32 0.19 -2.19 16 24 H 0.09 2.81 7.84 -2.91 -0.02 2.79 16 25 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 26 H 0.11 3.71 7.58 -2.91 -0.02 3.68 16 27 H 0.02 0.74 7.74 -2.39 -0.02 0.72 16 28 H 0.09 2.70 5.78 -2.38 -0.01 2.69 16 29 H -0.05 -2.69 8.01 -2.39 -0.02 -2.71 16 30 H 0.01 0.81 7.02 -2.39 -0.02 0.79 16 31 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 32 H 0.05 2.48 7.27 -2.39 -0.02 2.46 16 33 H 0.03 1.16 7.40 -2.38 -0.02 1.14 16 34 H 0.05 1.15 7.95 -2.39 -0.02 1.13 16 35 H 0.05 1.52 5.37 -2.39 -0.01 1.50 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.49 7.80 -2.39 -0.02 1.47 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.06 1.39 7.34 -2.39 -0.02 1.37 16 Total: -1.00 -66.04 348.60 3.88 -62.16 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.92 Total: 14.62 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 5.00 Total: -27.03 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.64 Total: -82.83 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.42 Total: -14.96 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -66.04 3.88 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.119 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds