Wall clock time and date at job start Mon Mar 30 2020 08:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00253 * 2 1 4 4 N 1.46900 * 109.46944 * 124.76514 * 3 2 1 5 5 C 1.46903 * 110.99843 * 196.43869 * 4 3 2 6 6 C 1.50696 * 109.47189 * 66.05077 * 5 4 3 7 7 H 1.08001 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00016 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99802 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99933 * 179.97438 * 8 6 5 11 11 H 1.48512 * 109.46799 * 90.00262 * 10 8 6 12 12 H 1.48497 * 109.47399 * 209.99792 * 10 8 6 13 13 H 1.48493 * 109.47207 * 330.00309 * 10 8 6 14 14 C 1.46907 * 110.99775 * 72.48971 * 4 3 2 15 15 C 1.52993 * 109.46875 * 199.50770 * 14 4 3 16 16 H 1.09000 * 109.47331 * 305.97723 * 15 14 4 17 17 O 1.42902 * 109.47344 * 65.97552 * 15 14 4 18 18 C 1.42898 * 114.00251 * 267.01353 * 17 15 14 19 19 C 1.53001 * 109.47159 * 185.97300 * 15 14 4 20 20 C 1.54257 * 110.03534 * 297.91112 * 19 15 14 21 21 C 1.54966 * 104.16286 * 217.13236 * 20 19 15 22 22 C 1.54891 * 102.77457 * 37.88831 * 21 20 19 23 23 C 1.53871 * 110.03454 * 180.68814 * 19 15 14 24 24 H 1.07999 * 120.00158 * 174.93846 * 1 2 3 25 25 H 1.08000 * 119.99444 * 354.94410 * 1 2 3 26 26 H 1.08001 * 119.99975 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47021 * 4.76825 * 3 2 1 28 28 H 1.09002 * 109.47385 * 244.76859 * 3 2 1 29 29 H 1.08998 * 109.47054 * 186.05153 * 5 4 3 30 30 H 1.09000 * 109.46990 * 306.04850 * 5 4 3 31 31 H 0.97002 * 119.99770 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46390 * 319.50665 * 14 4 3 33 33 H 1.09001 * 109.47009 * 79.50699 * 14 4 3 34 34 H 1.08995 * 109.47182 * 186.39541 * 18 17 15 35 35 H 1.09000 * 109.46793 * 306.40104 * 18 17 15 36 36 H 1.09000 * 109.46700 * 66.39802 * 18 17 15 37 37 H 1.09004 * 110.01209 * 59.29743 * 19 15 14 38 38 H 1.09001 * 110.48649 * 335.78092 * 20 19 15 39 39 H 1.09007 * 110.48791 * 98.41954 * 20 19 15 40 40 H 1.08991 * 110.71906 * 279.57229 * 21 20 19 41 41 H 1.09005 * 110.92175 * 156.29187 * 21 20 19 42 42 H 1.08997 * 110.48595 * 203.40615 * 22 21 20 43 43 H 1.08998 * 110.60026 * 80.81683 * 22 21 20 44 44 H 1.09001 * 110.03378 * 238.57239 * 23 19 15 45 45 H 1.08999 * 110.03207 * 359.95806 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9923 1.3342 1.1378 5 6 3.4527 2.7030 1.4066 6 6 2.2902 3.5418 1.8714 7 1 1.3076 3.1021 1.9579 8 6 2.4810 4.8706 2.1861 9 7 3.6777 5.4058 2.0811 10 14 1.0398 5.9104 2.7614 11 1 0.9325 5.8324 4.2406 12 1 1.2545 7.3224 2.3546 13 1 -0.2131 5.4032 2.1468 14 6 4.1290 0.4312 0.9127 15 6 4.7965 0.1082 2.2509 16 1 5.0555 1.0359 2.7611 17 8 3.8948 -0.6463 3.0632 18 6 3.1020 0.1503 3.9457 19 6 6.0659 -0.7094 2.0035 20 6 5.7082 -2.0496 1.3287 21 6 6.6894 -3.0674 1.9633 22 6 6.7665 -2.5959 3.4367 23 6 6.7389 -1.0563 3.3431 24 1 -0.5400 -0.9316 -0.0825 25 1 -0.5399 0.9317 0.0824 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1318 0.0854 28 1 2.6247 1.4007 -0.9296 29 1 4.2190 2.6830 2.1815 30 1 3.8688 3.1320 0.4951 31 1 3.8119 6.3407 2.3022 32 1 3.7748 -0.4907 0.4514 33 1 4.8510 0.9132 0.2535 34 1 2.5279 -0.5002 4.6054 35 1 3.7532 0.7893 4.5420 36 1 2.4202 0.7694 3.3626 37 1 6.7553 -0.1466 1.3740 38 1 4.6771 -2.3250 1.5501 39 1 5.8648 -1.9881 0.2516 40 1 7.6679 -3.0081 1.4870 41 1 6.2924 -4.0808 1.9023 42 1 7.6949 -2.9335 3.8972 43 1 5.9077 -2.9592 4.0010 44 1 7.7551 -0.6627 3.3634 45 1 6.1615 -0.6416 4.1694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595501513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:47 Heat of formation + Delta-G solvation = -38.712373 kcal Electronic energy + Delta-G solvation = -21818.396294 eV Core-core repulsion = 18835.847015 eV Total energy + Delta-G solvation = -2982.549280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.12465 -36.96961 -35.89199 -33.16656 -32.36100 -30.62931 -28.57434 -27.41280 -26.42454 -25.75908 -23.90030 -22.32950 -20.66738 -20.12634 -19.25171 -18.96514 -16.55956 -16.08086 -15.68880 -15.19393 -15.00468 -14.66839 -14.24251 -13.95192 -13.67794 -13.44928 -13.07778 -12.53736 -12.51926 -12.24052 -11.95341 -11.69708 -11.49071 -11.18491 -10.95164 -10.93017 -10.87323 -10.78214 -10.64947 -10.48092 -10.42405 -10.32381 -10.20213 -10.06759 -9.67354 -9.27746 -8.90036 -8.77247 -8.45851 -7.16214 -6.06169 -4.07483 2.78408 3.29477 3.36006 3.39292 4.36527 4.39797 4.70749 4.86137 4.90851 5.10841 5.29471 5.42026 5.54414 5.60816 5.64377 5.71919 5.78132 5.81426 5.87728 5.91002 5.97247 6.04449 6.05270 6.09467 6.19913 6.22826 6.25408 6.31788 6.32352 6.39815 6.51158 6.55373 6.59979 6.66045 6.82197 7.09415 7.22960 7.31653 7.34112 7.77962 7.89827 8.06318 8.19542 8.52670 9.00854 9.57185 11.04556 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.005690 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.306955 B = 4919.760116 C = 5680.960883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C 0.083 3.917 4 N -0.528 5.528 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.034 3.966 15 C 0.105 3.895 16 H 0.064 0.936 17 O -0.378 6.378 18 C 0.033 3.967 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.114 4.114 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.030 0.970 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -13.653 -0.650 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.144 4.144 3 C -0.044 4.044 4 N -0.252 5.252 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.095 4.095 15 C 0.047 3.953 16 H 0.082 0.918 17 O -0.297 6.297 18 C -0.063 4.063 19 C -0.110 4.110 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.189 -13.816 -0.219 14.181 hybrid contribution -0.212 1.348 -0.308 1.399 sum 2.977 -12.468 -0.527 12.830 Atomic orbital electron populations 1.23672 0.95979 1.01140 1.03510 1.22991 0.95799 0.98483 0.97158 1.21189 0.96056 0.95442 0.91729 1.62145 1.14408 1.11178 1.37488 1.19783 0.96203 0.82052 0.95399 1.21146 0.95302 0.94022 1.44060 0.91848 1.24976 0.95762 0.97928 0.95805 1.69956 1.21255 1.13415 1.49101 0.86542 0.82700 0.79405 0.79044 1.20639 1.21355 1.19848 1.22635 0.93358 0.97134 0.96350 1.22040 0.88251 0.93565 0.91449 0.91828 1.87697 1.54076 1.33767 1.54147 1.22830 0.95252 0.95388 0.92845 1.21920 0.95601 0.96690 0.96740 1.22361 1.00273 0.93990 0.98521 1.22485 0.99161 0.98554 0.95942 1.22282 1.00983 0.95706 0.96629 1.22079 0.99649 0.95851 0.97582 0.89414 0.88695 0.88326 0.89183 0.95441 0.95211 0.99298 0.92936 0.91371 0.95303 0.91832 0.95353 0.90408 0.90556 0.90320 0.92416 0.92166 0.92135 0.92571 0.91539 0.92528 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.13 14.32 29.01 0.42 -2.72 16 2 C -0.13 -2.09 9.27 -36.03 -0.33 -2.43 16 3 C 0.08 1.62 5.25 -4.98 -0.03 1.59 16 4 N -0.53 -10.97 2.69 -237.52 -0.64 -11.61 16 5 C 0.19 4.78 4.55 -4.98 -0.02 4.76 16 6 C -0.51 -13.73 8.28 -34.44 -0.29 -14.02 16 7 H 0.06 1.71 7.26 -52.49 -0.38 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.03 0.61 4.17 -3.82 -0.02 0.60 16 15 C 0.11 1.80 1.84 -26.73 -0.05 1.75 16 16 H 0.06 1.24 6.14 -51.93 -0.32 0.92 16 17 O -0.38 -6.61 8.78 -35.23 -0.31 -6.92 16 18 C 0.03 0.59 10.70 101.05 1.08 1.67 16 19 C -0.09 -1.28 2.83 -89.51 -0.25 -1.53 16 20 C -0.11 -1.45 5.32 -25.04 -0.13 -1.59 16 21 C -0.12 -1.37 6.91 -24.70 -0.17 -1.54 16 22 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 23 C -0.11 -1.49 6.22 -25.61 -0.16 -1.65 16 24 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 25 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 26 H 0.10 1.55 7.09 -52.49 -0.37 1.18 16 27 H 0.09 1.92 6.24 -51.93 -0.32 1.60 16 28 H 0.03 0.52 8.05 -51.93 -0.42 0.11 16 29 H 0.03 0.80 6.54 -51.93 -0.34 0.46 16 30 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.15 5.86 -51.93 -0.30 0.84 16 33 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.50 7.94 -51.93 -0.41 0.08 16 36 H 0.08 1.59 6.68 -51.93 -0.35 1.24 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.12 7.02 -51.93 -0.36 0.75 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.96 7.40 -51.93 -0.38 0.58 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -28.06 349.25 -8.35 -36.40 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.15 Total: 1.16 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.22 Total: -15.16 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.10 Total: -37.04 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.31 Total: -6.92 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.06 -8.35 -36.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.310 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds