Wall clock time and date at job start Mon Mar 30 2020 08:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00253 * 2 1 4 4 N 1.46900 * 109.46944 * 124.76514 * 3 2 1 5 5 C 1.46903 * 110.99843 * 196.43869 * 4 3 2 6 6 C 1.50696 * 109.47189 * 66.05077 * 5 4 3 7 7 H 1.08001 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00016 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99802 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99933 * 179.97438 * 8 6 5 11 11 H 1.48512 * 109.46799 * 90.00262 * 10 8 6 12 12 H 1.48497 * 109.47399 * 209.99792 * 10 8 6 13 13 H 1.48493 * 109.47207 * 330.00309 * 10 8 6 14 14 C 1.46907 * 110.99775 * 72.48971 * 4 3 2 15 15 C 1.52993 * 109.46875 * 199.50770 * 14 4 3 16 16 H 1.09000 * 109.47331 * 305.97723 * 15 14 4 17 17 O 1.42902 * 109.47344 * 65.97552 * 15 14 4 18 18 C 1.42898 * 114.00251 * 267.01353 * 17 15 14 19 19 C 1.53001 * 109.47159 * 185.97300 * 15 14 4 20 20 C 1.54257 * 110.03534 * 297.91112 * 19 15 14 21 21 C 1.54966 * 104.16286 * 217.13236 * 20 19 15 22 22 C 1.54891 * 102.77457 * 37.88831 * 21 20 19 23 23 C 1.53871 * 110.03454 * 180.68814 * 19 15 14 24 24 H 1.07999 * 120.00158 * 174.93846 * 1 2 3 25 25 H 1.08000 * 119.99444 * 354.94410 * 1 2 3 26 26 H 1.08001 * 119.99975 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47021 * 4.76825 * 3 2 1 28 28 H 1.09002 * 109.47385 * 244.76859 * 3 2 1 29 29 H 1.08998 * 109.47054 * 186.05153 * 5 4 3 30 30 H 1.09000 * 109.46990 * 306.04850 * 5 4 3 31 31 H 0.97002 * 119.99770 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46390 * 319.50665 * 14 4 3 33 33 H 1.09001 * 109.47009 * 79.50699 * 14 4 3 34 34 H 1.08995 * 109.47182 * 186.39541 * 18 17 15 35 35 H 1.09000 * 109.46793 * 306.40104 * 18 17 15 36 36 H 1.09000 * 109.46700 * 66.39802 * 18 17 15 37 37 H 1.09004 * 110.01209 * 59.29743 * 19 15 14 38 38 H 1.09001 * 110.48649 * 335.78092 * 20 19 15 39 39 H 1.09007 * 110.48791 * 98.41954 * 20 19 15 40 40 H 1.08991 * 110.71906 * 279.57229 * 21 20 19 41 41 H 1.09005 * 110.92175 * 156.29187 * 21 20 19 42 42 H 1.08997 * 110.48595 * 203.40615 * 22 21 20 43 43 H 1.08998 * 110.60026 * 80.81683 * 22 21 20 44 44 H 1.09001 * 110.03378 * 238.57239 * 23 19 15 45 45 H 1.08999 * 110.03207 * 359.95806 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9923 1.3342 1.1378 5 6 3.4527 2.7030 1.4066 6 6 2.2902 3.5418 1.8714 7 1 1.3076 3.1021 1.9579 8 6 2.4810 4.8706 2.1861 9 7 3.6777 5.4058 2.0811 10 14 1.0398 5.9104 2.7614 11 1 0.9325 5.8324 4.2406 12 1 1.2545 7.3224 2.3546 13 1 -0.2131 5.4032 2.1468 14 6 4.1290 0.4312 0.9127 15 6 4.7965 0.1082 2.2509 16 1 5.0555 1.0359 2.7611 17 8 3.8948 -0.6463 3.0632 18 6 3.1020 0.1503 3.9457 19 6 6.0659 -0.7094 2.0035 20 6 5.7082 -2.0496 1.3287 21 6 6.6894 -3.0674 1.9633 22 6 6.7665 -2.5959 3.4367 23 6 6.7389 -1.0563 3.3431 24 1 -0.5400 -0.9316 -0.0825 25 1 -0.5399 0.9317 0.0824 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1318 0.0854 28 1 2.6247 1.4007 -0.9296 29 1 4.2190 2.6830 2.1815 30 1 3.8688 3.1320 0.4951 31 1 3.8119 6.3407 2.3022 32 1 3.7748 -0.4907 0.4514 33 1 4.8510 0.9132 0.2535 34 1 2.5279 -0.5002 4.6054 35 1 3.7532 0.7893 4.5420 36 1 2.4202 0.7694 3.3626 37 1 6.7553 -0.1466 1.3740 38 1 4.6771 -2.3250 1.5501 39 1 5.8648 -1.9881 0.2516 40 1 7.6679 -3.0081 1.4870 41 1 6.2924 -4.0808 1.9023 42 1 7.6949 -2.9335 3.8972 43 1 5.9077 -2.9592 4.0010 44 1 7.7551 -0.6627 3.3634 45 1 6.1615 -0.6416 4.1694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595501513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:44:46 Heat of formation + Delta-G solvation = -53.155884 kcal Electronic energy + Delta-G solvation = -21819.022612 eV Core-core repulsion = 18835.847015 eV Total energy + Delta-G solvation = -2983.175597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44994 -38.39535 -37.27292 -34.98684 -34.03697 -31.99280 -29.63437 -29.21198 -27.80386 -27.21669 -25.68674 -23.86640 -22.08998 -21.30151 -20.50299 -20.31031 -18.60625 -17.47914 -17.01491 -16.68839 -16.43317 -16.29202 -15.59875 -15.44416 -15.27867 -14.76173 -14.33396 -14.07687 -14.03213 -13.72197 -13.55353 -13.33746 -12.99549 -12.83893 -12.62034 -12.47414 -12.15333 -12.03275 -11.89591 -11.82726 -11.79574 -11.68286 -11.38352 -11.34934 -11.28190 -11.11980 -10.60498 -10.33998 -10.19732 -8.89334 -8.21123 -6.30217 1.39773 1.40301 1.48340 1.51547 2.38977 2.99587 3.11671 3.31135 3.71747 3.89327 3.91897 4.10970 4.23110 4.30731 4.42505 4.50661 4.54152 4.59256 4.64424 4.67827 4.73826 4.78048 4.84270 4.91020 4.92172 5.00255 5.04986 5.06786 5.11665 5.17341 5.22193 5.24935 5.27207 5.32323 5.43051 5.52866 5.62342 5.65202 5.78344 6.02013 6.05850 6.32351 6.46688 6.63595 6.86183 7.39406 8.89909 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.005690 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.306955 B = 4919.760116 C = 5680.960883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C 0.084 3.916 4 N -0.528 5.528 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.037 3.963 15 C 0.111 3.889 16 H 0.031 0.969 17 O -0.374 6.374 18 C 0.040 3.960 19 C -0.090 4.090 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.115 4.115 24 H 0.119 0.881 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.005 0.995 30 H -0.044 1.044 31 H 0.263 0.737 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.090 0.910 35 H 0.020 0.980 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -15.612 -0.626 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.159 4.159 3 C -0.043 4.043 4 N -0.252 5.252 5 C 0.084 3.916 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.189 1.189 14 C -0.092 4.092 15 C 0.052 3.948 16 H 0.049 0.951 17 O -0.293 6.293 18 C -0.057 4.057 19 C -0.109 4.109 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.023 0.977 30 H -0.026 1.026 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.479 -15.798 -0.202 15.993 hybrid contribution -0.012 1.947 -0.338 1.976 sum 2.468 -13.851 -0.539 14.079 Atomic orbital electron populations 1.23888 0.95479 1.02267 1.00731 1.22825 0.96221 0.97214 0.99645 1.21161 0.95465 0.96614 0.91058 1.62126 1.15442 1.08947 1.38644 1.19384 0.94968 0.84300 0.92927 1.21395 0.95598 0.94609 1.43824 0.92036 1.25841 0.98428 0.99243 0.95830 1.70083 1.23389 1.13841 1.50130 0.85473 0.79474 0.77539 0.78708 1.19920 1.20933 1.18883 1.22705 0.92413 0.96992 0.97052 1.22001 0.89428 0.92964 0.90395 0.95121 1.87698 1.54001 1.33524 1.54090 1.22744 0.94727 0.95600 0.92632 1.21946 0.93978 0.97212 0.97812 1.22329 1.00056 0.93379 0.99123 1.22472 0.99318 0.98553 0.95124 1.22270 1.01640 0.94095 0.97268 1.22088 0.99712 0.97362 0.96123 0.86317 0.89400 0.86846 0.91677 0.95519 0.97658 1.02626 0.92784 0.89421 0.95898 0.89118 0.96177 0.93292 0.90308 0.91643 0.91422 0.90852 0.90794 0.90767 0.92248 0.91493 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.27 14.32 67.78 0.97 -4.30 16 2 C -0.14 -4.49 9.27 25.64 0.24 -4.25 16 3 C 0.08 3.33 5.25 85.56 0.45 3.78 16 4 N -0.53 -22.64 2.69 -905.36 -2.44 -25.08 16 5 C 0.21 11.12 4.55 85.56 0.39 11.51 16 6 C -0.52 -28.87 8.28 25.60 0.21 -28.66 16 7 H 0.06 3.40 7.26 -2.91 -0.02 3.38 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 10 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.04 1.35 4.17 86.30 0.36 1.71 16 15 C 0.11 3.86 1.84 30.59 0.06 3.92 16 16 H 0.03 1.27 6.14 -2.39 -0.01 1.26 16 17 O -0.37 -13.05 8.78 -148.98 -1.31 -14.36 16 18 C 0.04 1.41 10.70 113.37 1.21 2.62 16 19 C -0.09 -2.50 2.83 -10.07 -0.03 -2.53 16 20 C -0.11 -2.63 5.32 31.69 0.17 -2.46 16 21 C -0.12 -2.25 6.91 31.91 0.22 -2.03 16 22 C -0.12 -2.41 6.83 31.67 0.22 -2.19 16 23 C -0.12 -2.91 6.22 31.32 0.19 -2.72 16 24 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 25 H 0.09 2.62 7.84 -2.91 -0.02 2.60 16 26 H 0.11 3.30 7.09 -2.91 -0.02 3.28 16 27 H 0.06 2.86 6.24 -2.39 -0.01 2.85 16 28 H 0.03 1.04 8.05 -2.39 -0.02 1.02 16 29 H 0.01 0.31 6.54 -2.39 -0.02 0.29 16 30 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.09 2.87 5.86 -2.39 -0.01 2.86 16 33 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.02 0.73 7.94 -2.39 -0.02 0.71 16 36 H 0.05 2.04 6.68 -2.39 -0.02 2.02 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.73 7.02 -2.39 -0.02 1.72 16 39 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.40 7.40 -2.39 -0.02 1.38 16 Total: -1.00 -61.77 349.25 4.60 -57.17 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.92 Total: 16.69 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.12 Total: -24.87 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.15 Total: -80.83 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.31 Total: -14.36 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -61.77 4.60 -57.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.013 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds