Wall clock time and date at job start Mon Mar 30 2020 08:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00186 * 2 1 4 4 H 1.09006 * 109.46910 * 30.00496 * 3 2 1 5 5 C 1.52993 * 109.47307 * 270.00014 * 3 2 1 6 6 N 1.46898 * 109.47147 * 65.00198 * 5 3 2 7 7 C 1.46841 * 111.00213 * 66.04385 * 6 5 3 8 8 C 1.53040 * 109.52209 * 185.84054 * 7 6 5 9 9 C 1.53121 * 109.28048 * 300.81772 * 8 7 6 10 10 C 1.53124 * 109.15488 * 57.65788 * 9 8 7 11 11 H 1.08992 * 109.50506 * 62.32482 * 10 9 8 12 12 C 1.50700 * 109.49814 * 182.40707 * 10 9 8 13 13 H 1.07996 * 120.00496 * 119.99977 * 12 10 9 14 14 C 1.37884 * 119.99819 * 299.99361 * 12 10 9 15 15 N 1.31513 * 119.99666 * 180.02562 * 14 12 10 16 16 Si 1.86795 * 119.99804 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.47165 * 90.00109 * 16 14 12 18 18 H 1.48503 * 109.46816 * 209.99612 * 16 14 12 19 19 H 1.48499 * 109.47312 * 329.99602 * 16 14 12 20 20 C 1.46851 * 111.00191 * 190.25548 * 6 5 3 21 21 C 1.53003 * 109.47226 * 149.99880 * 3 2 1 22 22 C 1.53787 * 113.61385 * 300.00620 * 21 3 2 23 23 C 1.53784 * 87.07923 * 220.01697 * 22 21 3 24 24 C 1.53778 * 113.61726 * 202.50870 * 21 3 2 25 25 H 1.09000 * 109.47126 * 300.00048 * 1 2 3 26 26 H 1.09005 * 109.46655 * 59.99717 * 1 2 3 27 27 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 184.99856 * 5 3 2 29 29 H 1.09004 * 109.47415 * 304.99772 * 5 3 2 30 30 H 1.08995 * 109.46526 * 305.85385 * 7 6 5 31 31 H 1.09000 * 109.46601 * 65.83896 * 7 6 5 32 32 H 1.09000 * 109.50566 * 60.76361 * 8 7 6 33 33 H 1.09003 * 109.50057 * 180.87913 * 8 7 6 34 34 H 1.08998 * 109.51995 * 177.56057 * 9 8 7 35 35 H 1.08995 * 109.52647 * 297.69067 * 9 8 7 36 36 H 0.96999 * 119.99601 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.46019 * 294.18005 * 20 6 5 38 38 H 1.08999 * 109.46047 * 54.13870 * 20 6 5 39 39 H 1.08998 * 112.90553 * 71.25024 * 21 3 2 40 40 H 1.09004 * 113.61202 * 334.56449 * 22 21 3 41 41 H 1.08994 * 113.61447 * 105.46881 * 22 21 3 42 42 H 1.08993 * 113.61313 * 139.97752 * 23 22 21 43 43 H 1.09000 * 113.61578 * 270.88484 * 23 22 21 44 44 H 1.08999 * 113.61111 * 254.53134 * 24 21 3 45 45 H 1.09004 * 113.61682 * 25.42530 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4424 6 7 0.9130 1.9270 -2.0992 7 6 0.1425 3.0171 -1.4873 8 6 -1.2611 3.0555 -2.0960 9 6 -1.1507 3.2698 -3.6082 10 6 -0.3032 2.1476 -4.2141 11 1 -0.7968 1.1898 -4.0503 12 6 -0.1402 2.3832 -5.6936 13 1 0.8463 2.5083 -6.1151 14 6 -1.2505 2.4389 -6.5093 15 7 -1.1081 2.6441 -7.8005 16 14 -2.9567 2.2231 -5.7802 17 1 -3.4939 3.5475 -5.3769 18 1 -3.8543 1.6126 -6.7936 19 1 -2.8784 1.3375 -4.5907 20 6 1.0726 2.1355 -3.5440 21 6 3.3590 1.2632 0.7213 22 6 3.2602 0.8047 2.1859 23 6 4.3067 1.8834 2.5119 24 6 3.8115 2.6299 1.2619 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.7414 2.7274 -1.4437 29 1 2.8100 1.0320 -1.9815 30 1 0.0678 2.8504 -0.4128 31 1 0.6450 3.9662 -1.6737 32 1 -1.7695 2.1119 -1.8983 33 1 -1.8276 3.8746 -1.6529 34 1 -2.1462 3.2545 -4.0518 35 1 -0.6783 4.2318 -3.8063 36 1 -1.8892 2.6836 -8.3742 37 1 1.5710 3.0887 -3.7205 38 1 1.6736 1.3286 -3.9632 39 1 4.1285 0.7423 0.1517 40 1 2.2856 0.9914 2.6370 41 1 3.6159 -0.2124 2.3499 42 1 4.1109 2.4143 3.4435 43 1 5.3354 1.5322 2.4317 44 1 4.6123 3.0861 0.6799 45 1 2.9877 3.3155 1.4604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595618491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:42:13 Heat of formation + Delta-G solvation = -27.151401 kcal Electronic energy + Delta-G solvation = -21815.102879 eV Core-core repulsion = 18833.054921 eV Total energy + Delta-G solvation = -2982.047958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78693 -38.28674 -36.77438 -33.83236 -32.14592 -30.34458 -29.72007 -26.27453 -25.55875 -25.27626 -24.93716 -22.62952 -21.76796 -20.41768 -19.57515 -18.91384 -16.73207 -16.51255 -16.01932 -15.58676 -15.16284 -14.91090 -14.28035 -13.96514 -13.72061 -13.50325 -13.30543 -12.95722 -12.60803 -12.54614 -12.35648 -12.20262 -12.07884 -11.84760 -11.27425 -11.15151 -11.05138 -10.80898 -10.65600 -10.47845 -10.44862 -10.25899 -10.10967 -9.95377 -9.70259 -9.40827 -8.98355 -8.89690 -8.50374 -7.74428 -6.05775 -4.04696 3.28645 3.40100 3.43240 3.86695 4.21447 4.43354 4.50049 4.60324 4.70224 4.84949 5.06982 5.24993 5.31805 5.38370 5.44487 5.48039 5.57454 5.58286 5.59565 5.66160 5.71792 5.74739 5.80276 5.86135 5.87795 5.99012 6.05804 6.13185 6.16395 6.26008 6.29048 6.32346 6.36075 6.45968 6.61358 6.80272 6.83300 7.20824 7.39149 7.46571 7.61958 7.66585 7.87547 8.53707 8.97651 9.57088 11.07603 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035084 B = 0.004602 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.897913 B = 6083.137160 C = 6292.715206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.105 3.895 4 H 0.058 0.942 5 C 0.034 3.966 6 N -0.538 5.538 7 C 0.057 3.943 8 C -0.119 4.119 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.035 0.965 12 C -0.514 4.514 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.078 3.922 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.024 0.976 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -0.832 20.110 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.047 3.953 4 H 0.075 0.925 5 C -0.095 4.095 6 N -0.262 5.262 7 C -0.071 4.071 8 C -0.157 4.157 9 C -0.159 4.159 10 C 0.002 3.998 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.049 4.049 21 C -0.126 4.126 22 C -0.163 4.163 23 C -0.182 4.182 24 C -0.171 4.171 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.985 -1.414 19.991 20.916 hybrid contribution -0.758 1.004 0.024 1.258 sum 5.227 -0.411 20.015 20.690 Atomic orbital electron populations 1.22937 0.80986 1.02051 1.01017 1.87806 1.19932 1.26731 1.94998 1.22126 0.93451 0.85376 0.94348 0.92456 1.22662 0.91661 0.99877 0.95298 1.62023 1.15849 1.43346 1.04999 1.22080 0.95080 0.92317 0.97608 1.21664 0.95365 1.00964 0.97731 1.22023 1.00202 1.01136 0.92580 1.19152 0.91230 0.94525 0.94936 0.94689 1.21008 0.95051 1.49398 0.89742 0.90997 1.24987 0.99062 0.94433 0.94644 1.69902 1.30230 1.50043 1.03926 0.86817 0.84440 0.78293 0.78524 1.20785 1.22644 1.18844 1.22082 0.99575 0.99018 0.84190 1.22619 0.96725 0.97541 0.95729 1.22764 0.99098 0.98804 0.95618 1.22842 0.99217 0.98147 0.97949 1.22928 1.00968 0.95960 0.97245 0.95707 0.90583 0.90829 0.94612 0.90219 0.92154 0.95341 0.91917 0.92847 0.93572 0.92582 0.92712 0.95624 0.91458 0.88677 0.90417 0.91417 0.91622 0.90235 0.91286 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.58 101.05 1.07 1.43 16 2 O -0.38 -5.51 10.13 -35.23 -0.36 -5.87 16 3 C 0.11 1.35 1.96 -26.73 -0.05 1.29 16 4 H 0.06 0.72 5.68 -51.93 -0.29 0.42 16 5 C 0.03 0.49 4.62 -3.83 -0.02 0.47 16 6 N -0.54 -9.15 2.89 -234.68 -0.68 -9.83 16 7 C 0.06 0.90 4.61 -3.84 -0.02 0.88 16 8 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 9 C -0.12 -2.61 4.73 -26.60 -0.13 -2.74 16 10 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 11 H 0.04 0.87 7.21 -51.93 -0.37 0.49 16 12 C -0.51 -14.42 9.15 -34.44 -0.31 -14.74 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 16 Si 0.89 22.17 24.35 -169.99 -4.14 18.03 16 17 H -0.28 -6.81 6.89 56.52 0.39 -6.43 16 18 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 19 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 20 C 0.08 1.59 4.68 -3.83 -0.02 1.57 16 21 C -0.11 -1.14 3.36 -89.80 -0.30 -1.44 16 22 C -0.13 -1.20 7.44 -25.91 -0.19 -1.39 16 23 C -0.14 -1.18 8.08 -25.92 -0.21 -1.39 16 24 C -0.13 -1.21 7.63 -25.92 -0.20 -1.41 16 25 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.08 1.17 5.53 -51.93 -0.29 0.88 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 30 H 0.06 0.82 6.05 -51.93 -0.31 0.51 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.09 7.97 -51.93 -0.41 0.67 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 1.05 3.34 -51.93 -0.17 0.88 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 1.39 8.01 -51.93 -0.42 0.98 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -29.88 333.84 -8.37 -38.25 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.19 Total: -1.18 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.81 Total: -17.44 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.10 Total: -36.83 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.36 Total: -5.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.88 -8.37 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.096 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds