Wall clock time and date at job start Mon Mar 30 2020 08:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99678 * 2 1 4 4 H 1.08993 * 109.47067 * 34.66278 * 3 2 1 5 5 C 1.52999 * 109.47230 * 274.65903 * 3 2 1 6 6 N 1.46899 * 109.46877 * 156.15647 * 5 3 2 7 7 C 1.46850 * 110.99688 * 64.07999 * 6 5 3 8 8 C 1.53042 * 109.52252 * 174.15699 * 7 6 5 9 9 C 1.53116 * 109.27778 * 59.17991 * 8 7 6 10 10 C 1.53126 * 109.16039 * 302.34303 * 9 8 7 11 11 H 1.09000 * 109.50195 * 297.71907 * 10 9 8 12 12 C 1.50699 * 109.50280 * 177.59590 * 10 9 8 13 13 H 1.07998 * 119.99733 * 239.99789 * 12 10 9 14 14 C 1.37868 * 119.99907 * 60.00200 * 12 10 9 15 15 N 1.31517 * 120.00381 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99921 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47311 * 60.00143 * 16 14 12 18 18 H 1.48502 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47278 * 299.99939 * 16 14 12 20 20 C 1.46846 * 111.00305 * 299.86686 * 6 5 3 21 21 C 1.53001 * 109.46903 * 154.66377 * 3 2 1 22 22 C 1.53784 * 113.61527 * 296.69860 * 21 3 2 23 23 C 1.53778 * 87.17479 * 139.94019 * 22 21 3 24 24 C 1.53787 * 113.61478 * 34.19291 * 21 3 2 25 25 H 1.08998 * 109.47005 * 184.98738 * 1 2 3 26 26 H 1.08995 * 109.47273 * 304.98992 * 1 2 3 27 27 H 1.08999 * 109.46965 * 64.99050 * 1 2 3 28 28 H 1.09000 * 109.47466 * 276.16199 * 5 3 2 29 29 H 1.09007 * 109.46960 * 36.16381 * 5 3 2 30 30 H 1.08993 * 109.46101 * 294.17398 * 7 6 5 31 31 H 1.09002 * 109.46041 * 54.15277 * 7 6 5 32 32 H 1.09002 * 109.50321 * 179.11849 * 8 7 6 33 33 H 1.09002 * 109.50063 * 299.23355 * 8 7 6 34 34 H 1.08998 * 109.52310 * 62.24319 * 9 8 7 35 35 H 1.08990 * 109.52166 * 182.37920 * 9 8 7 36 36 H 0.97003 * 120.00278 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.46305 * 305.85612 * 20 6 5 38 38 H 1.08998 * 109.45893 * 65.82420 * 20 6 5 39 39 H 1.08996 * 112.90930 * 165.44263 * 21 3 2 40 40 H 1.09011 * 113.60797 * 254.52937 * 22 21 3 41 41 H 1.08999 * 113.61545 * 25.34059 * 22 21 3 42 42 H 1.08999 * 113.61846 * 89.15715 * 23 22 21 43 43 H 1.09005 * 113.60790 * 220.05846 * 23 22 21 44 44 H 1.09003 * 113.61387 * 334.56596 * 24 21 3 45 45 H 1.08996 * 113.61661 * 105.38633 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3858 1.9812 0.5844 5 6 2.1106 1.8192 -1.4377 6 7 2.1500 3.2876 -1.4314 7 6 3.3584 3.7787 -0.7570 8 6 3.4393 5.3006 -0.8964 9 6 2.1917 5.9323 -0.2728 10 6 0.9454 5.3679 -0.9604 11 1 0.9601 5.6353 -2.0170 12 6 -0.2892 5.9402 -0.3128 13 1 -1.0101 5.2828 0.1504 14 6 -0.4984 7.3029 -0.3116 15 7 0.3797 8.1035 -0.8753 16 14 -2.0290 8.0122 0.4905 17 1 -2.0494 7.6450 1.9292 18 1 -2.0179 9.4911 0.3567 19 1 -3.2370 7.4644 -0.1773 20 6 0.9368 3.8440 -0.8191 21 6 3.4087 1.2412 0.6173 22 6 3.4111 0.8115 2.0939 23 6 4.6609 -0.0238 1.7698 24 6 4.1552 -0.0692 0.3164 25 1 -0.3633 -1.0238 0.0893 26 1 -0.3633 0.5893 0.8419 27 1 -0.3633 0.4345 -0.9313 28 1 3.0197 1.4332 -1.8988 29 1 1.2435 1.4814 -2.0055 30 1 3.3185 3.5123 0.2992 31 1 4.2385 3.3251 -1.2129 32 1 4.3281 5.6664 -0.3823 33 1 3.4933 5.5669 -1.9520 34 1 2.1581 5.6984 0.7913 35 1 2.2249 7.0134 -0.4073 36 1 0.2327 9.0623 -0.8742 37 1 0.0581 3.4378 -1.3199 38 1 0.9082 3.5774 0.2374 39 1 4.0003 2.1355 0.4218 40 1 3.6014 1.6313 2.7868 41 1 2.5458 0.2116 2.3755 42 1 5.5955 0.5240 1.8900 43 1 4.6740 -0.9977 2.2592 44 1 3.4940 -0.9113 0.1117 45 1 4.9452 0.0390 -0.4267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595618599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:42:23 Heat of formation + Delta-G solvation = -26.423210 kcal Electronic energy + Delta-G solvation = -22087.835455 eV Core-core repulsion = 19105.819074 eV Total energy + Delta-G solvation = -2982.016381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03584 -37.79098 -36.81104 -33.87502 -31.91473 -30.00069 -28.91628 -26.24003 -25.80904 -25.29902 -24.85920 -22.63220 -21.44521 -20.78805 -19.27095 -18.41977 -16.63403 -16.18553 -16.00715 -15.39920 -15.03953 -14.78371 -14.24918 -14.10671 -13.69966 -13.23736 -13.06129 -12.77602 -12.47860 -12.27116 -12.19156 -11.94879 -11.66546 -11.48485 -11.26830 -11.12003 -10.94529 -10.74473 -10.68192 -10.34971 -10.23910 -10.17333 -9.89415 -9.72903 -9.61842 -9.43042 -9.04640 -8.71442 -8.30224 -7.52182 -5.97588 -4.04091 3.31364 3.36406 3.38467 3.82767 4.40837 4.60205 4.68772 4.77224 4.78982 4.91536 5.24797 5.32330 5.35725 5.41659 5.51304 5.54346 5.64246 5.71065 5.74477 5.80603 5.82871 5.89982 5.92792 5.97282 6.03295 6.14986 6.22371 6.29881 6.32159 6.40750 6.49902 6.61187 6.71097 6.75270 6.95869 7.21312 7.26411 7.42185 7.65953 7.74696 7.82947 8.08192 8.17331 8.47382 8.99560 9.60222 11.08266 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.005273 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.314638 B = 5308.514585 C = 5754.330829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.058 3.942 4 H 0.070 0.930 5 C 0.036 3.964 6 N -0.530 5.530 7 C 0.053 3.947 8 C -0.119 4.119 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.052 0.948 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.064 3.936 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.126 4.126 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -14.038 2.778 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.001 4.001 4 H 0.087 0.913 5 C -0.093 4.093 6 N -0.254 5.254 7 C -0.075 4.075 8 C -0.157 4.157 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.554 4.554 13 H 0.070 0.930 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.063 4.063 21 C -0.142 4.142 22 C -0.172 4.172 23 C -0.179 4.179 24 C -0.163 4.163 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.339 -13.855 2.250 15.401 hybrid contribution -1.151 0.399 1.318 1.795 sum 5.187 -13.456 3.568 14.856 Atomic orbital electron populations 1.22749 0.81527 1.01996 1.00371 1.87812 1.19133 1.27991 1.95172 1.22894 0.94674 0.84387 0.98114 0.91256 1.22673 1.02644 0.88946 0.95028 1.62263 1.03482 1.04649 1.55001 1.22342 0.92123 0.96962 0.96065 1.21711 0.99213 0.93409 1.01399 1.21646 0.93039 1.03151 0.96989 1.18658 0.93387 0.87125 0.97183 0.94791 1.21091 1.05772 0.91819 1.36745 0.93018 1.24919 0.96329 0.97149 0.95331 1.69880 1.34882 1.03621 1.44271 0.86706 0.83741 0.77933 0.79876 1.20410 1.21284 1.20320 1.22364 0.89645 0.99193 0.95086 1.23220 0.95215 0.99667 0.96136 1.22880 0.98451 0.99656 0.96210 1.22810 0.97660 1.00037 0.97442 1.22815 0.99153 0.98335 0.96038 0.90128 0.94157 0.93930 0.90834 0.90969 0.94616 0.92329 0.93548 0.92109 0.95233 0.89104 0.92994 0.92493 0.96053 0.86715 0.91925 0.90093 0.90595 0.91864 0.89098 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.79 101.05 1.09 1.46 16 2 O -0.38 -5.33 8.51 -35.23 -0.30 -5.63 16 3 C 0.06 0.85 1.82 -26.73 -0.05 0.80 16 4 H 0.07 1.15 5.28 -51.93 -0.27 0.87 16 5 C 0.04 0.56 5.33 -3.83 -0.02 0.54 16 6 N -0.53 -9.68 4.86 -234.67 -1.14 -10.82 16 7 C 0.05 0.90 3.86 -3.83 -0.01 0.89 16 8 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 9 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 10 C 0.06 1.37 2.27 -91.69 -0.21 1.16 16 11 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.52 -14.02 8.56 -34.44 -0.29 -14.31 16 13 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -25.22 11.35 55.43 0.63 -24.59 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.06 1.34 4.21 -3.83 -0.02 1.32 16 21 C -0.12 -1.64 2.81 -89.80 -0.25 -1.89 16 22 C -0.13 -1.65 7.55 -25.92 -0.20 -1.84 16 23 C -0.14 -1.52 8.10 -25.83 -0.21 -1.73 16 24 C -0.13 -1.48 7.48 -25.82 -0.19 -1.67 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.49 7.97 -51.93 -0.41 0.08 16 27 H 0.04 0.52 7.47 -51.93 -0.39 0.13 16 28 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 29 H 0.07 1.12 7.32 -51.92 -0.38 0.74 16 30 H 0.04 0.61 5.49 -51.93 -0.29 0.32 16 31 H 0.06 0.89 7.83 -51.93 -0.41 0.49 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 38 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 39 H 0.12 1.56 4.46 -51.93 -0.23 1.33 16 40 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.14 6.89 -51.93 -0.36 0.78 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -27.68 333.06 -9.53 -37.21 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.96 Total: 1.48 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.75 Total: -18.80 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.51 Total: -35.40 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.30 Total: -5.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.68 -9.53 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.787 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds