Wall clock time and date at job start Mon Mar 30 2020 08:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99678 * 2 1 4 4 H 1.08993 * 109.47067 * 34.66278 * 3 2 1 5 5 C 1.52999 * 109.47230 * 274.65903 * 3 2 1 6 6 N 1.46899 * 109.46877 * 156.15647 * 5 3 2 7 7 C 1.46850 * 110.99688 * 64.07999 * 6 5 3 8 8 C 1.53042 * 109.52252 * 174.15699 * 7 6 5 9 9 C 1.53116 * 109.27778 * 59.17991 * 8 7 6 10 10 C 1.53126 * 109.16039 * 302.34303 * 9 8 7 11 11 H 1.09000 * 109.50195 * 297.71907 * 10 9 8 12 12 C 1.50699 * 109.50280 * 177.59590 * 10 9 8 13 13 H 1.07998 * 119.99733 * 239.99789 * 12 10 9 14 14 C 1.37868 * 119.99907 * 60.00200 * 12 10 9 15 15 N 1.31517 * 120.00381 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99921 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47311 * 60.00143 * 16 14 12 18 18 H 1.48502 * 109.47408 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47278 * 299.99939 * 16 14 12 20 20 C 1.46846 * 111.00305 * 299.86686 * 6 5 3 21 21 C 1.53001 * 109.46903 * 154.66377 * 3 2 1 22 22 C 1.53784 * 113.61527 * 296.69860 * 21 3 2 23 23 C 1.53778 * 87.17479 * 139.94019 * 22 21 3 24 24 C 1.53787 * 113.61478 * 34.19291 * 21 3 2 25 25 H 1.08998 * 109.47005 * 184.98738 * 1 2 3 26 26 H 1.08995 * 109.47273 * 304.98992 * 1 2 3 27 27 H 1.08999 * 109.46965 * 64.99050 * 1 2 3 28 28 H 1.09000 * 109.47466 * 276.16199 * 5 3 2 29 29 H 1.09007 * 109.46960 * 36.16381 * 5 3 2 30 30 H 1.08993 * 109.46101 * 294.17398 * 7 6 5 31 31 H 1.09002 * 109.46041 * 54.15277 * 7 6 5 32 32 H 1.09002 * 109.50321 * 179.11849 * 8 7 6 33 33 H 1.09002 * 109.50063 * 299.23355 * 8 7 6 34 34 H 1.08998 * 109.52310 * 62.24319 * 9 8 7 35 35 H 1.08990 * 109.52166 * 182.37920 * 9 8 7 36 36 H 0.97003 * 120.00278 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.46305 * 305.85612 * 20 6 5 38 38 H 1.08998 * 109.45893 * 65.82420 * 20 6 5 39 39 H 1.08996 * 112.90930 * 165.44263 * 21 3 2 40 40 H 1.09011 * 113.60797 * 254.52937 * 22 21 3 41 41 H 1.08999 * 113.61545 * 25.34059 * 22 21 3 42 42 H 1.08999 * 113.61846 * 89.15715 * 23 22 21 43 43 H 1.09005 * 113.60790 * 220.05846 * 23 22 21 44 44 H 1.09003 * 113.61387 * 334.56596 * 24 21 3 45 45 H 1.08996 * 113.61661 * 105.38633 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3858 1.9812 0.5844 5 6 2.1106 1.8192 -1.4377 6 7 2.1500 3.2876 -1.4314 7 6 3.3584 3.7787 -0.7570 8 6 3.4393 5.3006 -0.8964 9 6 2.1917 5.9323 -0.2728 10 6 0.9454 5.3679 -0.9604 11 1 0.9601 5.6353 -2.0170 12 6 -0.2892 5.9402 -0.3128 13 1 -1.0101 5.2828 0.1504 14 6 -0.4984 7.3029 -0.3116 15 7 0.3797 8.1035 -0.8753 16 14 -2.0290 8.0122 0.4905 17 1 -2.0494 7.6450 1.9292 18 1 -2.0179 9.4911 0.3567 19 1 -3.2370 7.4644 -0.1773 20 6 0.9368 3.8440 -0.8191 21 6 3.4087 1.2412 0.6173 22 6 3.4111 0.8115 2.0939 23 6 4.6609 -0.0238 1.7698 24 6 4.1552 -0.0692 0.3164 25 1 -0.3633 -1.0238 0.0893 26 1 -0.3633 0.5893 0.8419 27 1 -0.3633 0.4345 -0.9313 28 1 3.0197 1.4332 -1.8988 29 1 1.2435 1.4814 -2.0055 30 1 3.3185 3.5123 0.2992 31 1 4.2385 3.3251 -1.2129 32 1 4.3281 5.6664 -0.3823 33 1 3.4933 5.5669 -1.9520 34 1 2.1581 5.6984 0.7913 35 1 2.2249 7.0134 -0.4073 36 1 0.2327 9.0623 -0.8742 37 1 0.0581 3.4378 -1.3199 38 1 0.9082 3.5774 0.2374 39 1 4.0003 2.1355 0.4218 40 1 3.6014 1.6313 2.7868 41 1 2.5458 0.2116 2.3755 42 1 5.5955 0.5240 1.8900 43 1 4.6740 -0.9977 2.2592 44 1 3.4940 -0.9113 0.1117 45 1 4.9452 0.0390 -0.4267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595618599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:42:22 Heat of formation + Delta-G solvation = -42.141938 kcal Electronic energy + Delta-G solvation = -22088.517070 eV Core-core repulsion = 19105.819074 eV Total energy + Delta-G solvation = -2982.697997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22460 -39.19329 -37.85624 -35.67696 -33.67185 -31.76655 -30.18571 -27.37234 -27.05701 -26.79717 -26.19515 -24.04458 -23.07231 -22.15970 -20.51875 -19.83143 -18.48974 -17.51626 -17.08560 -16.83218 -16.46477 -16.04286 -15.81857 -15.50985 -15.00373 -14.64515 -14.43920 -14.23069 -14.15832 -13.77620 -13.25597 -13.17109 -13.13290 -12.82942 -12.70292 -12.53291 -12.48810 -12.33955 -12.19438 -11.83280 -11.73962 -11.41143 -11.30138 -11.14130 -10.91267 -10.80198 -10.77090 -10.64272 -10.37340 -8.95546 -8.08083 -6.22459 1.40961 1.41865 1.49521 2.42005 2.73903 3.18796 3.22630 3.61554 3.77165 3.84430 4.00287 4.10432 4.16169 4.22219 4.32218 4.38335 4.45025 4.49493 4.52845 4.62296 4.69704 4.79352 4.79735 4.85801 4.88573 4.97296 4.99104 5.00017 5.05866 5.08978 5.13012 5.16666 5.21298 5.40018 5.40480 5.51929 5.62980 5.68544 5.95541 6.10130 6.15907 6.21371 6.41768 6.44900 6.89779 7.45419 8.96279 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.005273 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.314638 B = 5308.514585 C = 5754.330829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.067 3.933 4 H 0.046 0.954 5 C 0.040 3.960 6 N -0.540 5.540 7 C 0.058 3.942 8 C -0.114 4.114 9 C -0.103 4.103 10 C 0.053 3.947 11 H -0.005 1.005 12 C -0.537 4.537 13 H 0.049 0.951 14 C 0.016 3.984 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.082 3.918 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.121 4.121 25 H 0.105 0.895 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -15.614 3.436 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C 0.007 3.993 4 H 0.064 0.936 5 C -0.088 4.088 6 N -0.264 5.264 7 C -0.070 4.070 8 C -0.151 4.151 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.013 0.987 12 C -0.575 4.575 13 H 0.068 0.932 14 C -0.183 4.183 15 N -0.554 5.554 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.045 4.045 21 C -0.148 4.148 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.158 4.158 25 H 0.124 0.876 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.179 -15.451 2.909 17.284 hybrid contribution -1.436 0.875 1.082 1.999 sum 5.743 -14.576 3.991 16.167 Atomic orbital electron populations 1.22891 0.80671 1.03518 0.99953 1.87811 1.20068 1.27408 1.95103 1.22714 0.95329 0.84247 0.96965 0.93611 1.22682 1.03326 0.86904 0.95897 1.62180 1.02745 1.06570 1.54946 1.22363 0.92591 0.95193 0.96804 1.21633 0.97943 0.95089 1.00465 1.21447 0.94680 1.01315 0.96679 1.18588 0.93492 0.89969 0.94580 0.98693 1.21464 1.06765 0.92333 1.36969 0.93225 1.25689 0.99194 0.97540 0.95864 1.70027 1.36441 1.03722 1.45183 0.85712 0.80227 0.77194 0.79119 1.19702 1.20878 1.19718 1.21976 0.90971 0.96492 0.95098 1.23247 0.94314 1.00461 0.96817 1.22884 0.99172 0.99900 0.95575 1.22788 0.97260 1.00348 0.96517 1.22764 0.99024 0.96949 0.97055 0.87643 0.94660 0.94319 0.89159 0.91354 0.93914 0.89262 0.91068 0.93241 0.95900 0.92426 0.93053 0.93189 0.96219 0.86831 0.92030 0.90845 0.89416 0.90891 0.89864 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.79 113.37 1.22 1.82 16 2 O -0.39 -10.15 8.51 -148.98 -1.27 -11.41 16 3 C 0.07 1.85 1.82 30.59 0.06 1.91 16 4 H 0.05 1.50 5.28 -2.39 -0.01 1.48 16 5 C 0.04 1.18 5.33 86.30 0.46 1.64 16 6 N -0.54 -19.28 4.86 -896.35 -4.35 -23.64 16 7 C 0.06 1.87 3.86 86.33 0.33 2.20 16 8 C -0.11 -4.31 6.09 30.65 0.19 -4.12 16 9 C -0.10 -4.94 5.02 30.68 0.15 -4.78 16 10 C 0.05 2.69 2.27 -11.48 -0.03 2.67 16 11 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 12 C -0.54 -29.94 8.56 25.60 0.22 -29.72 16 13 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 14 C 0.02 0.90 5.30 84.65 0.45 1.35 16 15 N -0.91 -53.36 11.35 21.44 0.24 -53.12 16 16 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C 0.08 3.48 4.21 86.33 0.36 3.84 16 21 C -0.13 -3.13 2.81 -10.26 -0.03 -3.16 16 22 C -0.14 -3.10 7.55 31.12 0.23 -2.87 16 23 C -0.13 -2.43 8.10 31.18 0.25 -2.18 16 24 C -0.12 -2.48 7.48 31.18 0.23 -2.25 16 25 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 26 H 0.03 0.84 7.97 -2.39 -0.02 0.82 16 27 H 0.04 0.91 7.47 -2.39 -0.02 0.89 16 28 H 0.09 2.38 7.88 -2.39 -0.02 2.37 16 29 H 0.07 2.05 7.32 -2.38 -0.02 2.04 16 30 H 0.04 1.36 5.49 -2.39 -0.01 1.35 16 31 H 0.09 2.41 7.83 -2.39 -0.02 2.39 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 3.14 6.15 -2.39 -0.01 3.12 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 38 H 0.02 0.84 6.18 -2.39 -0.01 0.83 16 39 H 0.11 2.76 4.46 -2.39 -0.01 2.75 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 1.75 7.90 -2.39 -0.02 1.74 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.08 1.86 6.89 -2.39 -0.02 1.85 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -60.40 333.06 1.70 -58.70 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.94 Total: 17.28 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 4.11 Total: -33.66 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -4.11 Total: -76.76 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.27 Total: -11.41 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.40 1.70 -58.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595618599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -60.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds