Wall clock time and date at job start Mon Mar 30 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46508 * 109.46663 * 2 1 4 4 C 1.34776 * 119.99987 * 81.40930 * 3 2 1 5 5 O 1.21279 * 119.99898 * 185.97402 * 4 3 2 6 6 C 1.50704 * 119.99641 * 5.96544 * 4 3 2 7 7 H 1.08993 * 109.47503 * 33.67299 * 6 4 3 8 8 C 1.52994 * 109.47406 * 273.66401 * 6 4 3 9 9 C 1.50707 * 109.46588 * 153.66773 * 6 4 3 10 10 H 1.08001 * 119.99955 * 0.39868 * 9 6 4 11 11 C 1.37877 * 119.99636 * 180.39587 * 9 6 4 12 12 N 1.31515 * 120.00327 * 6.86790 * 11 9 6 13 13 Si 1.86800 * 119.99594 * 186.86526 * 11 9 6 14 14 H 1.48503 * 109.47409 * 270.00036 * 13 11 9 15 15 H 1.48497 * 109.47569 * 30.00386 * 13 11 9 16 16 H 1.48507 * 109.46982 * 150.00362 * 13 11 9 17 17 C 1.46494 * 119.99890 * 261.40724 * 3 2 1 18 18 H 1.09004 * 109.46929 * 230.09860 * 17 3 2 19 19 C 1.53004 * 109.47269 * 350.09690 * 17 3 2 20 20 C 1.53000 * 109.47100 * 60.00553 * 19 17 3 21 21 C 1.52994 * 109.47200 * 59.99682 * 20 19 17 22 22 C 1.53004 * 109.47354 * 300.00163 * 21 20 19 23 23 C 1.52999 * 109.47488 * 110.10247 * 17 3 2 24 24 H 1.09000 * 109.47641 * 180.02562 * 23 17 3 25 25 C 1.52994 * 109.47321 * 59.99519 * 23 17 3 26 26 H 1.08999 * 109.46836 * 184.60191 * 1 2 3 27 27 H 1.08999 * 109.47485 * 304.60128 * 1 2 3 28 28 H 1.09003 * 109.47176 * 64.60466 * 1 2 3 29 29 H 1.08994 * 109.47232 * 240.00460 * 2 1 3 30 30 H 1.08995 * 109.47462 * 119.99771 * 2 1 3 31 31 H 1.09001 * 109.47323 * 335.56837 * 8 6 4 32 32 H 1.09007 * 109.46746 * 95.56565 * 8 6 4 33 33 H 1.09003 * 109.47777 * 215.56479 * 8 6 4 34 34 H 0.96991 * 119.99426 * 355.33407 * 12 11 9 35 35 H 1.09000 * 109.47219 * 180.02562 * 19 17 3 36 36 H 1.09000 * 109.47334 * 300.00381 * 19 17 3 37 37 H 1.08994 * 109.46972 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.46467 * 299.99751 * 20 19 17 39 39 H 1.08995 * 109.47616 * 60.00191 * 21 20 19 40 40 H 1.09004 * 109.46973 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47334 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47219 * 299.99953 * 22 21 20 43 43 H 1.08997 * 109.47006 * 50.89634 * 25 23 17 44 44 H 1.08999 * 109.47203 * 170.90050 * 25 23 17 45 45 H 1.09008 * 109.47258 * 290.90262 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0785 2.0748 1.1541 5 8 2.3787 3.2497 1.1406 6 6 1.7725 1.3901 2.4613 7 1 2.1040 0.3529 2.4145 8 6 0.2650 1.4328 2.7188 9 6 2.4934 2.0978 3.5797 10 1 3.1061 2.9612 3.3661 11 6 2.3706 1.6430 4.8755 12 7 1.7374 0.5166 5.1199 13 14 3.1040 2.6268 6.2839 14 1 4.5006 2.1826 6.5237 15 1 3.0966 4.0705 5.9361 16 1 2.2978 2.4095 7.5120 17 6 2.4411 2.0087 -1.2544 18 1 3.4248 2.4592 -1.1218 19 6 2.5095 0.9497 -2.3567 20 6 1.1288 0.3174 -2.5429 21 6 0.1214 1.3993 -2.9369 22 6 0.0529 2.4583 -1.8347 23 6 1.4337 3.0907 -1.6485 24 1 1.7480 3.5572 -2.5822 25 6 1.3652 4.1496 -0.5464 26 1 -0.3633 -1.0244 0.0825 27 1 -0.3634 0.5836 0.8459 28 1 -0.3634 0.4407 -0.9284 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.1722 2.2729 2.1793 32 1 -0.1889 0.5037 2.3739 33 1 0.0820 1.5520 3.7868 34 1 1.2985 0.0405 4.3977 35 1 2.8246 1.4165 -3.2899 36 1 3.2273 0.1789 -2.0759 37 1 1.1777 -0.4373 -3.3277 38 1 0.8142 -0.1494 -1.6095 39 1 0.4359 1.8662 -3.8702 40 1 -0.8624 0.9489 -3.0691 41 1 -0.6645 3.2294 -2.1156 42 1 -0.2618 1.9915 -0.9013 43 1 2.3731 4.4845 -0.3012 44 1 0.7749 4.9977 -0.8935 45 1 0.8989 3.7211 0.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597106244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:14 Heat of formation + Delta-G solvation = 22.139330 kcal Electronic energy + Delta-G solvation = -23249.824614 eV Core-core repulsion = 20269.914062 eV Total energy + Delta-G solvation = -2979.910552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99979 -37.76505 -35.10729 -33.93956 -32.64966 -31.34093 -29.85663 -28.97416 -25.81222 -25.10879 -23.32645 -22.87856 -21.67617 -21.13594 -19.94400 -17.81087 -16.81616 -16.46768 -15.87085 -15.26620 -15.00630 -14.51451 -13.93397 -13.71880 -13.34994 -13.27885 -12.99686 -12.46762 -12.38701 -12.17314 -12.06229 -11.80704 -11.69717 -11.48113 -11.18800 -11.05033 -10.93693 -10.78032 -10.68906 -10.43027 -10.33295 -10.05780 -9.99917 -9.85964 -9.72606 -9.63530 -8.52750 -8.29195 -8.18031 -7.76940 -6.32943 -4.03273 3.47037 3.52034 3.63048 3.67874 3.71400 4.57115 4.78371 4.81679 4.87178 5.16721 5.26600 5.34799 5.38047 5.47636 5.50348 5.57523 5.59571 5.65175 5.66417 5.77158 5.86363 5.94883 6.04293 6.07022 6.13270 6.17719 6.25642 6.31287 6.33478 6.36635 6.45308 6.52819 6.62548 6.64836 6.72110 6.75380 7.07986 7.17783 7.30772 7.50327 7.98841 8.29945 8.56645 8.91473 9.25215 9.65790 11.04974 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.006365 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.597140 B = 4398.206365 C = 4749.088960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.090 3.910 3 N -0.614 5.614 4 C 0.515 3.485 5 O -0.521 6.521 6 C 0.019 3.981 7 H 0.036 0.964 8 C -0.139 4.139 9 C -0.579 4.579 10 H 0.062 0.938 11 C 0.018 3.982 12 N -0.915 5.915 13 Si 1.071 2.929 14 H -0.289 1.289 15 H -0.287 1.287 16 H -0.285 1.285 17 C 0.154 3.846 18 H 0.070 0.930 19 C -0.122 4.122 20 C -0.186 4.186 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.096 4.096 24 H 0.063 0.937 25 C -0.135 4.135 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.017 0.983 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -2.052 -15.291 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.033 4.033 3 N -0.350 5.350 4 C 0.307 3.693 5 O -0.397 6.397 6 C -0.002 4.002 7 H 0.053 0.947 8 C -0.197 4.197 9 C -0.618 4.618 10 H 0.080 0.920 11 C -0.185 4.185 12 N -0.552 5.552 13 Si 0.900 3.100 14 H -0.216 1.216 15 H -0.213 1.213 16 H -0.211 1.211 17 C 0.050 3.950 18 H 0.088 0.912 19 C -0.160 4.160 20 C -0.222 4.222 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.116 4.116 24 H 0.081 0.919 25 C -0.192 4.192 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.698 -1.410 -13.649 13.985 hybrid contribution -0.252 -0.020 -1.921 1.937 sum -2.950 -1.430 -15.570 15.911 Atomic orbital electron populations 1.23284 0.96919 1.02828 1.04824 1.21940 0.94030 0.84114 1.03239 1.48121 1.66542 1.13576 1.06737 1.21379 0.76013 0.86803 0.85112 1.90660 1.46482 1.16009 1.86552 1.18981 0.94333 0.96803 0.90088 0.94670 1.22077 0.96641 0.98099 1.02899 1.21939 1.31480 1.16153 0.92186 0.91980 1.25761 0.96691 0.96420 0.99606 1.70784 1.33598 1.13761 1.37026 0.83511 0.76032 0.75263 0.75243 1.21562 1.21345 1.21082 1.20946 0.97308 0.92777 0.83967 0.91220 1.21741 0.97665 0.98334 0.98273 1.23059 0.95192 0.98514 1.05404 1.21470 0.98642 0.96655 0.98393 1.21894 0.97017 0.97745 0.99861 1.21518 0.95172 0.96017 0.98889 0.91913 1.22467 1.02909 0.96221 0.97564 0.92062 0.89707 0.89790 0.88798 0.90510 0.94940 0.94350 0.91069 0.91879 0.91250 0.91588 0.92663 0.85551 0.92712 0.92503 0.92830 0.90019 0.90990 0.96443 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.96 7.34 37.16 0.27 -2.68 16 2 C 0.09 1.31 4.96 -4.04 -0.02 1.29 16 3 N -0.61 -10.65 2.02 -169.33 -0.34 -10.99 16 4 C 0.52 11.43 5.26 -10.98 -0.06 11.37 16 5 O -0.52 -12.81 10.33 5.56 0.06 -12.75 16 6 C 0.02 0.46 1.61 -92.92 -0.15 0.31 16 7 H 0.04 0.88 5.93 -51.93 -0.31 0.57 16 8 C -0.14 -3.13 7.04 37.15 0.26 -2.87 16 9 C -0.58 -16.48 8.29 -34.44 -0.29 -16.76 16 10 H 0.06 1.88 7.06 -52.49 -0.37 1.51 16 11 C 0.02 0.52 4.89 -17.82 -0.09 0.43 16 12 N -0.91 -26.64 12.96 55.43 0.72 -25.92 16 13 Si 1.07 25.69 29.91 -169.99 -5.08 20.60 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.15 2.35 2.61 -67.93 -0.18 2.18 16 18 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 19 C -0.12 -1.45 4.95 -26.73 -0.13 -1.58 16 20 C -0.19 -2.00 4.82 -26.73 -0.13 -2.13 16 21 C -0.11 -1.26 5.14 -26.73 -0.14 -1.39 16 22 C -0.13 -1.72 4.77 -26.73 -0.13 -1.84 16 23 C -0.10 -1.44 2.54 -90.62 -0.23 -1.67 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 C -0.14 -2.45 7.24 37.15 0.27 -2.19 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.33 3.91 -51.93 -0.20 1.12 16 28 H 0.08 1.03 3.09 -51.93 -0.16 0.87 16 29 H 0.09 1.14 4.08 -51.93 -0.21 0.93 16 30 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 31 H 0.03 0.70 7.71 -51.93 -0.40 0.30 16 32 H 0.04 0.74 5.88 -51.92 -0.31 0.44 16 33 H 0.07 1.80 6.21 -51.93 -0.32 1.48 16 34 H 0.27 7.65 6.11 -40.82 -0.25 7.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.13 1.42 1.60 -56.21 -0.09 1.33 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.21 4.44 -51.93 -0.23 0.98 16 43 H 0.07 1.45 6.64 -51.93 -0.34 1.10 16 44 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 1.64 5.25 -52.77 -0.28 1.36 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -30.44 302.75 -7.60 -38.04 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.78 Total: 3.99 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.73 Total: -17.53 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.38 Total: -36.92 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.06 Total: -12.75 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.44 -7.60 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597106244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.179 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds