Wall clock time and date at job start Mon Mar 30 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46508 * 109.46663 * 2 1 4 4 C 1.34776 * 119.99987 * 81.40930 * 3 2 1 5 5 O 1.21279 * 119.99898 * 185.97402 * 4 3 2 6 6 C 1.50704 * 119.99641 * 5.96544 * 4 3 2 7 7 H 1.08993 * 109.47503 * 33.67299 * 6 4 3 8 8 C 1.52994 * 109.47406 * 273.66401 * 6 4 3 9 9 C 1.50707 * 109.46588 * 153.66773 * 6 4 3 10 10 H 1.08001 * 119.99955 * 0.39868 * 9 6 4 11 11 C 1.37877 * 119.99636 * 180.39587 * 9 6 4 12 12 N 1.31515 * 120.00327 * 6.86790 * 11 9 6 13 13 Si 1.86800 * 119.99594 * 186.86526 * 11 9 6 14 14 H 1.48503 * 109.47409 * 270.00036 * 13 11 9 15 15 H 1.48497 * 109.47569 * 30.00386 * 13 11 9 16 16 H 1.48507 * 109.46982 * 150.00362 * 13 11 9 17 17 C 1.46494 * 119.99890 * 261.40724 * 3 2 1 18 18 H 1.09004 * 109.46929 * 230.09860 * 17 3 2 19 19 C 1.53004 * 109.47269 * 350.09690 * 17 3 2 20 20 C 1.53000 * 109.47100 * 60.00553 * 19 17 3 21 21 C 1.52994 * 109.47200 * 59.99682 * 20 19 17 22 22 C 1.53004 * 109.47354 * 300.00163 * 21 20 19 23 23 C 1.52999 * 109.47488 * 110.10247 * 17 3 2 24 24 H 1.09000 * 109.47641 * 180.02562 * 23 17 3 25 25 C 1.52994 * 109.47321 * 59.99519 * 23 17 3 26 26 H 1.08999 * 109.46836 * 184.60191 * 1 2 3 27 27 H 1.08999 * 109.47485 * 304.60128 * 1 2 3 28 28 H 1.09003 * 109.47176 * 64.60466 * 1 2 3 29 29 H 1.08994 * 109.47232 * 240.00460 * 2 1 3 30 30 H 1.08995 * 109.47462 * 119.99771 * 2 1 3 31 31 H 1.09001 * 109.47323 * 335.56837 * 8 6 4 32 32 H 1.09007 * 109.46746 * 95.56565 * 8 6 4 33 33 H 1.09003 * 109.47777 * 215.56479 * 8 6 4 34 34 H 0.96991 * 119.99426 * 355.33407 * 12 11 9 35 35 H 1.09000 * 109.47219 * 180.02562 * 19 17 3 36 36 H 1.09000 * 109.47334 * 300.00381 * 19 17 3 37 37 H 1.08994 * 109.46972 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.46467 * 299.99751 * 20 19 17 39 39 H 1.08995 * 109.47616 * 60.00191 * 21 20 19 40 40 H 1.09004 * 109.46973 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47334 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47219 * 299.99953 * 22 21 20 43 43 H 1.08997 * 109.47006 * 50.89634 * 25 23 17 44 44 H 1.08999 * 109.47203 * 170.90050 * 25 23 17 45 45 H 1.09008 * 109.47258 * 290.90262 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0785 2.0748 1.1541 5 8 2.3787 3.2497 1.1406 6 6 1.7725 1.3901 2.4613 7 1 2.1040 0.3529 2.4145 8 6 0.2650 1.4328 2.7188 9 6 2.4934 2.0978 3.5797 10 1 3.1061 2.9612 3.3661 11 6 2.3706 1.6430 4.8755 12 7 1.7374 0.5166 5.1199 13 14 3.1040 2.6268 6.2839 14 1 4.5006 2.1826 6.5237 15 1 3.0966 4.0705 5.9361 16 1 2.2978 2.4095 7.5120 17 6 2.4411 2.0087 -1.2544 18 1 3.4248 2.4592 -1.1218 19 6 2.5095 0.9497 -2.3567 20 6 1.1288 0.3174 -2.5429 21 6 0.1214 1.3993 -2.9369 22 6 0.0529 2.4583 -1.8347 23 6 1.4337 3.0907 -1.6485 24 1 1.7480 3.5572 -2.5822 25 6 1.3652 4.1496 -0.5464 26 1 -0.3633 -1.0244 0.0825 27 1 -0.3634 0.5836 0.8459 28 1 -0.3634 0.4407 -0.9284 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.1722 2.2729 2.1793 32 1 -0.1889 0.5037 2.3739 33 1 0.0820 1.5520 3.7868 34 1 1.2985 0.0405 4.3977 35 1 2.8246 1.4165 -3.2899 36 1 3.2273 0.1789 -2.0759 37 1 1.1777 -0.4373 -3.3277 38 1 0.8142 -0.1494 -1.6095 39 1 0.4359 1.8662 -3.8702 40 1 -0.8624 0.9489 -3.0691 41 1 -0.6645 3.2294 -2.1156 42 1 -0.2618 1.9915 -0.9013 43 1 2.3731 4.4845 -0.3012 44 1 0.7749 4.9977 -0.8935 45 1 0.8989 3.7211 0.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597106244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:14 Heat of formation + Delta-G solvation = 4.984759 kcal Electronic energy + Delta-G solvation = -23250.568492 eV Core-core repulsion = 20269.914062 eV Total energy + Delta-G solvation = -2980.654430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32565 -39.28377 -36.73643 -35.63371 -33.90631 -32.65557 -31.60679 -30.22534 -27.22564 -27.01396 -24.76281 -24.37154 -22.93976 -22.20895 -21.36855 -19.35447 -18.70282 -18.05514 -17.28214 -16.64541 -16.23850 -15.68335 -15.63235 -15.31233 -14.89946 -14.85139 -14.29480 -13.83486 -13.72253 -13.46986 -13.37600 -13.27177 -13.06807 -12.88519 -12.69905 -12.59481 -12.46007 -12.43243 -12.28602 -11.97529 -11.92227 -11.53226 -11.37983 -10.99122 -10.93483 -10.67256 -10.54748 -10.42253 -9.91573 -9.26498 -8.60026 -6.30425 1.50481 1.58945 1.78637 1.96256 2.22593 2.56417 3.18697 3.69953 3.77483 3.86627 4.01696 4.10867 4.23387 4.29762 4.36979 4.43536 4.48723 4.53653 4.56986 4.59302 4.66998 4.76206 4.77435 4.78132 4.82185 4.96982 5.00286 5.03725 5.06404 5.16119 5.18809 5.31120 5.32722 5.35955 5.40428 5.45538 5.51873 5.68612 5.70746 5.90508 6.02133 6.25098 6.53423 6.78656 7.40600 7.59539 8.80118 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.006365 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.597140 B = 4398.206365 C = 4749.088960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 N -0.602 5.602 4 C 0.511 3.489 5 O -0.556 6.556 6 C 0.015 3.985 7 H 0.030 0.970 8 C -0.121 4.121 9 C -0.601 4.601 10 H 0.033 0.967 11 C -0.020 4.020 12 N -0.928 5.928 13 Si 1.110 2.890 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.147 3.853 18 H 0.045 0.955 19 C -0.116 4.116 20 C -0.183 4.183 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.093 4.093 24 H 0.083 0.917 25 C -0.126 4.126 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.027 0.973 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -3.489 -17.767 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.039 4.039 3 N -0.335 5.335 4 C 0.302 3.698 5 O -0.435 6.435 6 C -0.006 4.006 7 H 0.048 0.952 8 C -0.179 4.179 9 C -0.639 4.639 10 H 0.051 0.949 11 C -0.220 4.220 12 N -0.566 5.566 13 Si 0.933 3.067 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.044 3.956 18 H 0.064 0.936 19 C -0.154 4.154 20 C -0.219 4.219 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.112 4.112 24 H 0.101 0.899 25 C -0.183 4.183 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.385 -2.893 -16.166 16.768 hybrid contribution -0.032 0.444 -1.207 1.286 sum -3.417 -2.449 -17.373 17.874 Atomic orbital electron populations 1.23213 0.95468 1.04105 1.04426 1.22268 0.95226 0.82372 1.04051 1.48015 1.65059 1.14328 1.06130 1.20980 0.76375 0.86449 0.85995 1.90666 1.48348 1.17317 1.87203 1.18899 0.94945 0.96022 0.90706 0.95230 1.21867 0.95628 0.99705 1.00704 1.22157 1.31942 1.15721 0.94110 0.94856 1.26933 0.96563 0.96641 1.01818 1.70861 1.34395 1.14360 1.36956 0.83003 0.76351 0.74182 0.73176 1.19913 1.21191 1.20060 1.21147 0.96155 0.94275 0.84029 0.93648 1.21751 0.98951 0.97362 0.97289 1.23017 0.94022 0.98892 1.06005 1.21450 0.99746 0.95819 0.97591 1.21868 0.95559 0.98655 1.00314 1.21497 0.96470 0.95045 0.98178 0.89897 1.22242 1.00836 0.97601 0.97620 0.89461 0.92435 0.88218 0.85263 0.92437 0.95021 0.91255 0.94216 0.92314 0.89225 0.90875 0.89914 0.86258 0.91406 0.90815 0.92430 0.91683 0.93879 0.95380 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.24 7.34 71.98 0.53 -4.71 16 2 C 0.08 2.27 4.96 86.38 0.43 2.70 16 3 N -0.60 -20.77 2.02 -808.04 -1.63 -22.41 16 4 C 0.51 23.56 5.26 87.66 0.46 24.02 16 5 O -0.56 -28.97 10.33 -3.02 -0.03 -29.00 16 6 C 0.02 0.78 1.61 -12.28 -0.02 0.76 16 7 H 0.03 1.53 5.93 -2.39 -0.01 1.51 16 8 C -0.12 -5.61 7.04 71.98 0.51 -5.10 16 9 C -0.60 -35.69 8.29 25.60 0.21 -35.48 16 10 H 0.03 2.12 7.06 -2.91 -0.02 2.10 16 11 C -0.02 -1.18 4.89 84.65 0.41 -0.77 16 12 N -0.93 -54.96 12.96 21.45 0.28 -54.68 16 13 Si 1.11 52.64 29.91 68.60 2.05 54.69 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.15 4.34 2.61 44.99 0.12 4.46 16 18 H 0.05 1.56 8.11 -2.39 -0.02 1.54 16 19 C -0.12 -2.31 4.95 30.60 0.15 -2.16 16 20 C -0.18 -3.06 4.82 30.59 0.15 -2.91 16 21 C -0.11 -1.89 5.14 30.59 0.16 -1.73 16 22 C -0.13 -3.08 4.77 30.60 0.15 -2.93 16 23 C -0.09 -2.65 2.54 -10.79 -0.03 -2.68 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 C -0.13 -4.72 7.24 71.98 0.52 -4.20 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.73 3.91 -2.39 -0.01 1.72 16 28 H 0.10 2.13 3.09 -2.39 -0.01 2.12 16 29 H 0.13 2.68 4.08 -2.39 -0.01 2.67 16 30 H 0.06 1.82 6.14 -2.39 -0.01 1.81 16 31 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 32 H 0.07 2.72 5.88 -2.38 -0.01 2.70 16 33 H 0.04 2.06 6.21 -2.39 -0.01 2.04 16 34 H 0.27 15.41 6.11 -92.71 -0.57 14.85 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.39 7.48 -2.39 -0.02 1.37 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.12 2.15 1.60 -6.41 -0.01 2.14 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.81 4.44 -2.39 -0.01 1.80 16 43 H 0.04 1.82 6.64 -2.39 -0.02 1.81 16 44 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.04 1.98 5.25 -15.69 -0.08 1.90 16 Total: -1.00 -69.64 302.75 5.53 -64.11 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.12 Total: 18.01 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.74 Total: -30.73 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.36 Total: -77.09 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.03 Total: -29.00 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.05 Total: 54.69 kcal Total: -69.64 5.53 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597106244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.099 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds