Wall clock time and date at job start Mon Mar 30 2020 06:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47399 * 2 1 4 4 C 1.34781 * 119.99918 * 278.87426 * 3 2 1 5 5 O 1.21283 * 119.99805 * 180.72639 * 4 3 2 6 6 C 1.50698 * 119.99879 * 0.72435 * 4 3 2 7 7 H 1.09001 * 109.47156 * 26.45517 * 6 4 3 8 8 C 1.52997 * 109.47361 * 266.45131 * 6 4 3 9 9 C 1.50704 * 109.47171 * 146.45104 * 6 4 3 10 10 H 1.08003 * 119.99530 * 4.42148 * 9 6 4 11 11 C 1.37871 * 120.00152 * 184.42016 * 9 6 4 12 12 N 1.31521 * 119.99963 * 191.75791 * 11 9 6 13 13 Si 1.86802 * 120.00110 * 11.75589 * 11 9 6 14 14 H 1.48499 * 109.46971 * 95.07390 * 13 11 9 15 15 H 1.48497 * 109.47248 * 215.07984 * 13 11 9 16 16 H 1.48500 * 109.47138 * 335.07950 * 13 11 9 17 17 C 1.46506 * 120.00225 * 98.87327 * 3 2 1 18 18 H 1.09001 * 109.46919 * 128.48946 * 17 3 2 19 19 C 1.52994 * 109.46875 * 8.49143 * 17 3 2 20 20 C 1.53004 * 109.47183 * 299.99884 * 19 17 3 21 21 C 1.53001 * 109.47022 * 300.00582 * 20 19 17 22 22 C 1.52994 * 109.47617 * 59.99683 * 21 20 19 23 23 C 1.53001 * 109.46914 * 248.48816 * 17 3 2 24 24 H 1.09003 * 109.46871 * 179.97438 * 23 17 3 25 25 C 1.53001 * 109.47211 * 300.00103 * 23 17 3 26 26 H 1.08999 * 109.47424 * 180.08618 * 1 2 3 27 27 H 1.08997 * 109.47415 * 300.09417 * 1 2 3 28 28 H 1.09004 * 109.46755 * 60.09115 * 1 2 3 29 29 H 1.09005 * 109.47467 * 119.99524 * 2 1 3 30 30 H 1.09000 * 109.47380 * 239.99554 * 2 1 3 31 31 H 1.09001 * 109.47000 * 66.88183 * 8 6 4 32 32 H 1.08998 * 109.47453 * 186.88520 * 8 6 4 33 33 H 1.08998 * 109.47098 * 306.88759 * 8 6 4 34 34 H 0.96999 * 119.99274 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47594 * 60.00109 * 19 17 3 36 36 H 1.09003 * 109.47231 * 180.02562 * 19 17 3 37 37 H 1.09003 * 109.46808 * 60.00022 * 20 19 17 38 38 H 1.08997 * 109.47581 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.47221 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46871 * 299.99401 * 21 20 19 41 41 H 1.09003 * 109.47231 * 59.99937 * 22 21 20 42 42 H 1.08997 * 109.47594 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47258 * 69.73020 * 25 23 17 44 44 H 1.09000 * 109.46711 * 189.73068 * 25 23 17 45 45 H 1.09000 * 109.46961 * 309.72755 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0732 2.0765 -1.1533 5 8 2.4900 3.2155 -1.1553 6 6 1.6169 1.4388 -2.4401 7 1 0.8784 0.6674 -2.2214 8 6 2.8166 0.8093 -3.1509 9 6 0.9997 2.4874 -3.3293 10 1 1.0076 3.5242 -3.0271 11 6 0.4250 2.1231 -4.5284 12 7 0.0959 3.0450 -5.4068 13 14 0.1138 0.3202 -4.9055 14 1 -1.2822 -0.0285 -4.5384 15 1 0.3205 0.0750 -6.3554 16 1 1.0559 -0.5191 -4.1224 17 6 2.4471 2.0066 1.2536 18 1 3.4408 2.4354 1.1243 19 6 2.4866 0.9526 2.3619 20 6 1.0917 0.3507 2.5432 21 6 0.1050 1.4559 2.9252 22 6 0.0655 2.5099 1.8169 23 6 1.4604 3.1118 1.6356 24 1 1.7792 3.5769 2.5685 25 6 1.4210 4.1658 0.5272 26 1 -0.3634 -1.0276 0.0015 27 1 -0.3634 0.5153 0.8891 28 1 -0.3633 0.5124 -0.8908 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1879 -0.0300 -2.5629 32 1 2.5112 0.4561 -4.1358 33 1 3.6055 1.5534 -3.2603 34 1 -0.3088 2.7887 -6.2502 35 1 3.1895 0.1653 2.0897 36 1 2.8051 1.4180 3.2947 37 1 0.7727 -0.1146 1.6105 38 1 1.1196 -0.3999 3.3331 39 1 -0.8887 1.0271 3.0548 40 1 0.4240 1.9212 3.8579 41 1 -0.2534 2.0446 0.8842 42 1 -0.6377 3.2970 2.0888 43 1 0.9410 3.7458 -0.3567 44 1 0.8562 5.0326 0.8701 45 1 2.4378 4.4698 0.2785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597106246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:21 Heat of formation + Delta-G solvation = 18.813627 kcal Electronic energy + Delta-G solvation = -23276.425873 eV Core-core repulsion = 20296.371107 eV Total energy + Delta-G solvation = -2980.054765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96114 -37.75530 -34.96889 -33.58166 -32.61270 -31.34901 -30.80854 -28.93148 -25.71938 -25.15078 -23.37634 -23.24101 -21.44941 -21.12641 -19.69782 -17.86736 -16.88042 -15.96743 -15.93126 -15.46682 -14.97583 -14.47105 -14.25149 -13.72613 -13.34260 -13.19402 -12.81053 -12.51000 -12.42193 -12.33345 -12.12994 -12.05137 -11.71084 -11.63351 -11.43697 -11.08487 -11.02315 -10.81203 -10.55944 -10.47030 -10.25631 -10.16366 -9.87862 -9.75709 -9.67797 -9.52209 -9.12704 -8.45365 -8.35456 -7.79699 -6.06118 -4.02444 3.24716 3.33423 3.36047 3.59551 3.69431 4.40671 4.79740 4.83840 4.88681 5.15601 5.23762 5.29495 5.37914 5.46651 5.48660 5.60043 5.62813 5.64078 5.67536 5.79302 5.84097 5.95352 6.06695 6.09843 6.13852 6.22133 6.23294 6.32326 6.35660 6.40703 6.45490 6.56409 6.60074 6.63376 6.70191 6.81063 6.91227 7.20754 7.29116 7.33332 7.63674 8.13669 8.55707 9.10116 9.22381 9.55833 11.06956 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.007389 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.692892 B = 3788.559460 C = 4093.244903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.092 3.908 3 N -0.616 5.616 4 C 0.523 3.477 5 O -0.519 6.519 6 C -0.002 4.002 7 H 0.043 0.957 8 C -0.136 4.136 9 C -0.503 4.503 10 H 0.084 0.916 11 C 0.074 3.926 12 N -0.892 5.892 13 Si 0.859 3.141 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.250 1.250 17 C 0.154 3.846 18 H 0.071 0.929 19 C -0.122 4.122 20 C -0.184 4.184 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.096 4.096 24 H 0.063 0.937 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.021 0.979 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -8.443 15.857 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.031 4.031 3 N -0.352 5.352 4 C 0.314 3.686 5 O -0.394 6.394 6 C -0.023 4.023 7 H 0.061 0.939 8 C -0.194 4.194 9 C -0.541 4.541 10 H 0.102 0.898 11 C -0.128 4.128 12 N -0.530 5.530 13 Si 0.686 3.314 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.175 1.175 17 C 0.051 3.949 18 H 0.089 0.911 19 C -0.160 4.160 20 C -0.220 4.220 21 C -0.152 4.152 22 C -0.166 4.166 23 C -0.115 4.115 24 H 0.081 0.919 25 C -0.197 4.197 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.040 0.960 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.877 -7.770 15.657 17.580 hybrid contribution -0.326 -0.906 -0.227 0.989 sum 1.551 -8.677 15.430 17.770 Atomic orbital electron populations 1.22995 0.96682 1.02483 1.04658 1.21902 0.94172 0.84091 1.02922 1.48139 1.66534 1.13512 1.07007 1.21117 0.77227 0.85616 0.84668 1.90657 1.45203 1.17645 1.85865 1.19322 0.95036 0.97393 0.90581 0.93888 1.22114 0.98905 0.98318 1.00104 1.20808 1.36315 0.94707 1.02289 0.89775 1.24928 0.95438 0.96889 0.95543 1.69951 1.42348 1.33056 1.07625 0.87301 0.78879 0.87138 0.78068 1.20718 1.21285 1.17455 1.20941 0.97470 0.92750 0.83759 0.91123 1.21745 0.97589 0.98362 0.98291 1.23022 0.95200 0.98521 1.05276 1.21478 0.98721 0.96575 0.98439 1.21886 0.96994 0.97896 0.99819 1.21518 0.95121 0.95936 0.98965 0.91891 1.22435 1.03111 0.96327 0.97865 0.92015 0.89334 0.90646 0.88820 0.90913 0.95617 0.92453 0.92978 0.92699 0.91662 0.91214 0.85782 0.92700 0.92475 0.92731 0.89857 0.92657 0.90238 0.96016 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.83 7.52 37.16 0.28 -2.55 16 2 C 0.09 1.27 4.80 -4.04 -0.02 1.25 16 3 N -0.62 -10.23 2.01 -167.48 -0.34 -10.57 16 4 C 0.52 11.16 5.18 -10.98 -0.06 11.11 16 5 O -0.52 -12.54 10.87 5.56 0.06 -12.48 16 6 C 0.00 -0.04 1.30 -92.92 -0.12 -0.16 16 7 H 0.04 0.93 3.61 -51.93 -0.19 0.75 16 8 C -0.14 -2.93 8.28 37.16 0.31 -2.63 16 9 C -0.50 -14.20 8.81 -34.44 -0.30 -14.50 16 10 H 0.08 2.71 7.42 -52.48 -0.39 2.32 16 11 C 0.07 2.10 5.37 -17.82 -0.10 2.00 16 12 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 13 Si 0.86 20.38 25.70 -169.99 -4.37 16.02 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.25 -5.39 5.29 56.52 0.30 -5.09 16 17 C 0.15 2.27 2.60 -67.93 -0.18 2.09 16 18 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 19 C -0.12 -1.36 4.94 -26.73 -0.13 -1.49 16 20 C -0.18 -1.92 4.85 -26.73 -0.13 -2.05 16 21 C -0.11 -1.27 5.18 -26.73 -0.14 -1.41 16 22 C -0.13 -1.79 4.78 -26.73 -0.13 -1.91 16 23 C -0.10 -1.45 2.54 -90.62 -0.23 -1.68 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.14 -2.64 7.27 37.16 0.27 -2.37 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.12 2.98 -51.93 -0.15 0.97 16 28 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 29 H 0.09 1.04 4.15 -51.93 -0.22 0.82 16 30 H 0.07 1.04 6.22 -51.93 -0.32 0.72 16 31 H 0.02 0.46 7.37 -51.93 -0.38 0.08 16 32 H 0.06 1.26 4.66 -51.93 -0.24 1.02 16 33 H 0.05 1.16 8.13 -51.93 -0.42 0.73 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 0.68 7.41 -51.93 -0.38 0.29 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.12 1.34 1.60 -54.81 -0.09 1.25 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.30 4.53 -51.93 -0.24 1.06 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.78 5.34 -51.93 -0.28 1.50 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -30.98 303.39 -6.99 -37.97 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.02 Total: 5.32 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.67 Total: -14.30 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.44 Total: -37.09 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.37 Total: 16.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.98 -6.99 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597106246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.781 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds