Wall clock time and date at job start Mon Mar 30 2020 06:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47399 * 2 1 4 4 C 1.34781 * 119.99918 * 278.87426 * 3 2 1 5 5 O 1.21283 * 119.99805 * 180.72639 * 4 3 2 6 6 C 1.50698 * 119.99879 * 0.72435 * 4 3 2 7 7 H 1.09001 * 109.47156 * 26.45517 * 6 4 3 8 8 C 1.52997 * 109.47361 * 266.45131 * 6 4 3 9 9 C 1.50704 * 109.47171 * 146.45104 * 6 4 3 10 10 H 1.08003 * 119.99530 * 4.42148 * 9 6 4 11 11 C 1.37871 * 120.00152 * 184.42016 * 9 6 4 12 12 N 1.31521 * 119.99963 * 191.75791 * 11 9 6 13 13 Si 1.86802 * 120.00110 * 11.75589 * 11 9 6 14 14 H 1.48499 * 109.46971 * 95.07390 * 13 11 9 15 15 H 1.48497 * 109.47248 * 215.07984 * 13 11 9 16 16 H 1.48500 * 109.47138 * 335.07950 * 13 11 9 17 17 C 1.46506 * 120.00225 * 98.87327 * 3 2 1 18 18 H 1.09001 * 109.46919 * 128.48946 * 17 3 2 19 19 C 1.52994 * 109.46875 * 8.49143 * 17 3 2 20 20 C 1.53004 * 109.47183 * 299.99884 * 19 17 3 21 21 C 1.53001 * 109.47022 * 300.00582 * 20 19 17 22 22 C 1.52994 * 109.47617 * 59.99683 * 21 20 19 23 23 C 1.53001 * 109.46914 * 248.48816 * 17 3 2 24 24 H 1.09003 * 109.46871 * 179.97438 * 23 17 3 25 25 C 1.53001 * 109.47211 * 300.00103 * 23 17 3 26 26 H 1.08999 * 109.47424 * 180.08618 * 1 2 3 27 27 H 1.08997 * 109.47415 * 300.09417 * 1 2 3 28 28 H 1.09004 * 109.46755 * 60.09115 * 1 2 3 29 29 H 1.09005 * 109.47467 * 119.99524 * 2 1 3 30 30 H 1.09000 * 109.47380 * 239.99554 * 2 1 3 31 31 H 1.09001 * 109.47000 * 66.88183 * 8 6 4 32 32 H 1.08998 * 109.47453 * 186.88520 * 8 6 4 33 33 H 1.08998 * 109.47098 * 306.88759 * 8 6 4 34 34 H 0.96999 * 119.99274 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47594 * 60.00109 * 19 17 3 36 36 H 1.09003 * 109.47231 * 180.02562 * 19 17 3 37 37 H 1.09003 * 109.46808 * 60.00022 * 20 19 17 38 38 H 1.08997 * 109.47581 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.47221 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46871 * 299.99401 * 21 20 19 41 41 H 1.09003 * 109.47231 * 59.99937 * 22 21 20 42 42 H 1.08997 * 109.47594 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47258 * 69.73020 * 25 23 17 44 44 H 1.09000 * 109.46711 * 189.73068 * 25 23 17 45 45 H 1.09000 * 109.46961 * 309.72755 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0732 2.0765 -1.1533 5 8 2.4900 3.2155 -1.1553 6 6 1.6169 1.4388 -2.4401 7 1 0.8784 0.6674 -2.2214 8 6 2.8166 0.8093 -3.1509 9 6 0.9997 2.4874 -3.3293 10 1 1.0076 3.5242 -3.0271 11 6 0.4250 2.1231 -4.5284 12 7 0.0959 3.0450 -5.4068 13 14 0.1138 0.3202 -4.9055 14 1 -1.2822 -0.0285 -4.5384 15 1 0.3205 0.0750 -6.3554 16 1 1.0559 -0.5191 -4.1224 17 6 2.4471 2.0066 1.2536 18 1 3.4408 2.4354 1.1243 19 6 2.4866 0.9526 2.3619 20 6 1.0917 0.3507 2.5432 21 6 0.1050 1.4559 2.9252 22 6 0.0655 2.5099 1.8169 23 6 1.4604 3.1118 1.6356 24 1 1.7792 3.5769 2.5685 25 6 1.4210 4.1658 0.5272 26 1 -0.3634 -1.0276 0.0015 27 1 -0.3634 0.5153 0.8891 28 1 -0.3633 0.5124 -0.8908 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1879 -0.0300 -2.5629 32 1 2.5112 0.4561 -4.1358 33 1 3.6055 1.5534 -3.2603 34 1 -0.3088 2.7887 -6.2502 35 1 3.1895 0.1653 2.0897 36 1 2.8051 1.4180 3.2947 37 1 0.7727 -0.1146 1.6105 38 1 1.1196 -0.3999 3.3331 39 1 -0.8887 1.0271 3.0548 40 1 0.4240 1.9212 3.8579 41 1 -0.2534 2.0446 0.8842 42 1 -0.6377 3.2970 2.0888 43 1 0.9410 3.7458 -0.3567 44 1 0.8562 5.0326 0.8701 45 1 2.4378 4.4698 0.2785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597106246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:21 Heat of formation + Delta-G solvation = -0.862582 kcal Electronic energy + Delta-G solvation = -23277.279097 eV Core-core repulsion = 20296.371107 eV Total energy + Delta-G solvation = -2980.907990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23695 -39.22458 -36.42408 -35.35329 -33.87370 -33.12954 -32.09290 -30.14250 -27.18345 -27.00198 -25.00589 -24.35617 -22.64952 -22.18737 -21.11894 -19.31145 -18.76969 -17.60617 -17.26213 -17.00384 -16.26605 -15.84309 -15.50753 -15.15759 -14.90220 -14.71816 -14.25201 -14.06333 -13.80106 -13.55758 -13.44462 -13.32838 -13.18097 -12.85350 -12.74114 -12.63772 -12.38953 -12.32854 -12.14271 -11.98743 -11.58339 -11.45001 -11.34686 -11.21052 -10.97219 -10.90612 -10.65886 -10.60157 -9.98731 -9.23411 -8.27357 -6.30611 1.37167 1.38974 1.50387 2.01256 2.29169 2.37568 3.06912 3.74459 3.81383 3.91146 4.05767 4.16740 4.28358 4.34748 4.40587 4.49468 4.52316 4.55002 4.61272 4.64906 4.72000 4.77066 4.81090 4.84168 4.88390 4.99126 5.00958 5.02803 5.12985 5.14764 5.21388 5.34557 5.38186 5.38629 5.45636 5.49227 5.50972 5.60043 5.66161 5.74467 5.98551 6.27618 6.65469 6.83668 7.29990 7.63828 8.90612 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.007389 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.692892 B = 3788.559460 C = 4093.244903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.081 3.919 3 N -0.603 5.603 4 C 0.517 3.483 5 O -0.563 6.563 6 C -0.003 4.003 7 H 0.066 0.934 8 C -0.134 4.134 9 C -0.512 4.512 10 H 0.018 0.982 11 C 0.010 3.990 12 N -0.951 5.951 13 Si 0.934 3.066 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.207 1.207 17 C 0.148 3.852 18 H 0.053 0.947 19 C -0.114 4.114 20 C -0.182 4.182 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.093 4.093 24 H 0.084 0.916 25 C -0.130 4.130 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.023 0.977 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -13.035 18.876 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.040 4.040 3 N -0.337 5.337 4 C 0.308 3.692 5 O -0.442 6.442 6 C -0.024 4.024 7 H 0.084 0.916 8 C -0.192 4.192 9 C -0.551 4.551 10 H 0.036 0.964 11 C -0.187 4.187 12 N -0.590 5.590 13 Si 0.756 3.244 14 H -0.198 1.198 15 H -0.214 1.214 16 H -0.129 1.129 17 C 0.045 3.955 18 H 0.071 0.929 19 C -0.152 4.152 20 C -0.218 4.218 21 C -0.146 4.146 22 C -0.166 4.166 23 C -0.112 4.112 24 H 0.102 0.898 25 C -0.187 4.187 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.051 -12.402 18.734 22.560 hybrid contribution -0.387 0.708 -1.128 1.387 sum 1.663 -11.694 17.605 21.200 Atomic orbital electron populations 1.22987 0.96304 1.04164 1.03163 1.22321 0.94530 0.82191 1.04997 1.48057 1.65011 1.14481 1.06174 1.20884 0.77232 0.85249 0.85851 1.90656 1.47346 1.19488 1.86691 1.19267 0.95950 0.96363 0.90864 0.91580 1.22034 0.97517 0.99183 1.00438 1.20938 1.37088 0.93351 1.03681 0.96354 1.25977 0.94725 1.03060 0.94900 1.70140 1.44026 1.36388 1.08489 0.86113 0.79945 0.80186 0.78183 1.19771 1.21389 1.12880 1.21123 0.96174 0.94035 0.84123 0.92897 1.21755 0.98807 0.97520 0.97093 1.22997 0.94033 0.98655 1.06089 1.21449 1.00007 0.95812 0.97334 1.21860 0.95611 0.98781 1.00326 1.21509 0.96606 0.95148 0.97936 0.89779 1.22219 1.00970 0.97701 0.97842 0.88662 0.88614 0.94489 0.84780 0.90843 0.91147 0.92779 0.94950 0.92579 0.89893 0.89352 0.86249 0.89691 0.91117 0.91444 0.91946 0.93137 0.94455 0.95816 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.93 7.52 71.98 0.54 -4.39 16 2 C 0.08 1.92 4.80 86.38 0.41 2.33 16 3 N -0.60 -19.32 2.01 -802.17 -1.61 -20.93 16 4 C 0.52 22.80 5.18 87.66 0.45 23.25 16 5 O -0.56 -29.38 10.87 -3.04 -0.03 -29.41 16 6 C 0.00 -0.13 1.30 -12.29 -0.02 -0.15 16 7 H 0.07 2.77 3.61 -2.39 -0.01 2.76 16 8 C -0.13 -5.58 8.28 71.98 0.60 -4.98 16 9 C -0.51 -30.74 8.81 25.60 0.23 -30.52 16 10 H 0.02 1.29 7.42 -2.91 -0.02 1.27 16 11 C 0.01 0.58 5.37 84.65 0.45 1.04 16 12 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 13 Si 0.93 42.00 25.70 68.60 1.76 43.77 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.21 -7.80 5.29 99.48 0.53 -7.28 16 17 C 0.15 4.13 2.60 44.99 0.12 4.24 16 18 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 19 C -0.11 -1.99 4.94 30.59 0.15 -1.84 16 20 C -0.18 -2.77 4.85 30.60 0.15 -2.62 16 21 C -0.11 -1.94 5.18 30.59 0.16 -1.78 16 22 C -0.13 -3.38 4.78 30.59 0.15 -3.23 16 23 C -0.09 -2.74 2.54 -10.79 -0.03 -2.77 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 C -0.13 -5.26 7.27 71.98 0.52 -4.73 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.10 2.12 2.98 -2.39 -0.01 2.11 16 28 H 0.04 1.16 6.44 -2.39 -0.02 1.14 16 29 H 0.13 2.17 4.15 -2.38 -0.01 2.16 16 30 H 0.07 1.76 6.22 -2.39 -0.01 1.74 16 31 H 0.07 2.29 7.37 -2.39 -0.02 2.27 16 32 H 0.05 2.26 4.66 -2.39 -0.01 2.25 16 33 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.08 1.22 7.41 -2.39 -0.02 1.20 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.93 1.60 -5.09 -0.01 1.92 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.92 4.53 -2.39 -0.01 1.91 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.81 5.34 -2.40 -0.01 1.80 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 2.16 6.56 -2.39 -0.02 2.14 16 Total: -1.00 -76.56 303.39 5.11 -71.44 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.80 Total: 22.47 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 3.89 Total: -26.16 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.31 Total: -82.11 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.03 Total: -29.41 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.76 Total: 43.77 kcal Total: -76.56 5.11 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597106246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.582 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds