Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47097 * 119.99875 * 2 1 3 5 5 H 1.07998 * 120.00129 * 119.99586 * 4 2 1 6 6 C 1.37880 * 119.99861 * 300.00304 * 4 2 1 7 7 N 1.31510 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47432 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47062 * 119.99742 * 8 6 4 11 11 H 1.48506 * 109.46890 * 239.99790 * 8 6 4 12 12 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 13 13 O 1.21278 * 119.99985 * 240.00503 * 12 2 1 14 14 N 1.34779 * 119.99944 * 60.00215 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47069 * 304.99442 * 16 15 14 18 18 C 1.52993 * 109.47345 * 65.00000 * 16 15 14 19 19 C 1.53006 * 109.46846 * 185.00008 * 16 15 14 20 20 C 1.53000 * 109.46846 * 179.97438 * 19 16 15 21 21 C 1.53006 * 109.46846 * 179.97438 * 20 19 16 22 22 C 1.52993 * 109.47155 * 59.99875 * 21 20 19 23 23 C 1.53000 * 109.47345 * 299.99819 * 22 21 20 24 24 C 1.53002 * 109.47029 * 60.00302 * 23 22 21 25 25 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 26 26 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 30 30 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 31 31 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 32 32 H 1.09004 * 109.47135 * 179.97438 * 18 16 15 33 33 H 1.09002 * 109.47179 * 299.99584 * 18 16 15 34 34 H 1.08993 * 109.47639 * 59.99724 * 18 16 15 35 35 H 1.09002 * 109.46824 * 299.99583 * 19 16 15 36 36 H 1.09002 * 109.47069 * 299.99434 * 20 19 16 37 37 H 1.09001 * 109.47624 * 59.99715 * 20 19 16 38 38 H 1.09002 * 109.46824 * 299.99583 * 21 20 19 39 39 H 1.08996 * 109.46751 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47179 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47493 * 60.00117 * 22 21 20 42 42 H 1.09002 * 109.47069 * 300.00558 * 23 22 21 43 43 H 1.09001 * 109.47624 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47519 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47254 * 59.99752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1659 -1.5866 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6854 -0.2192 -4.9000 17 1 0.5992 -0.1402 -4.8564 18 6 2.2966 1.1819 -4.9643 19 6 2.0897 -1.0097 -6.1461 20 6 1.5798 -0.2883 -7.3953 21 6 1.9847 -1.0784 -8.6414 22 6 1.3746 -2.4800 -8.5771 23 6 1.8845 -3.2014 -7.3279 24 6 1.4796 -2.4113 -6.0817 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7094 1.1618 3.4844 29 1 1.1489 0.5385 -2.5436 30 1 1.8311 -1.9685 -3.6506 31 1 3.2848 -0.9413 -3.6508 32 1 1.9340 1.6959 -5.8546 33 1 2.0085 1.7451 -4.0766 34 1 3.3827 1.1030 -5.0078 35 1 3.1760 -1.0887 -6.1896 36 1 0.4935 -0.2097 -7.3515 37 1 2.0148 0.7101 -7.4413 38 1 3.0710 -1.1566 -8.6849 39 1 1.6210 -0.5648 -9.5313 40 1 1.6634 -3.0431 -9.4646 41 1 0.2882 -2.4018 -8.5335 42 1 2.9708 -3.2796 -7.3714 43 1 1.4502 -4.2001 -7.2822 44 1 1.8432 -2.9250 -5.1917 45 1 0.3933 -2.3330 -6.0382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598439282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = -86.592785 kcal Electronic energy + Delta-G solvation = -20916.785756 eV Core-core repulsion = 17932.160226 eV Total energy + Delta-G solvation = -2984.625530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55024 -38.45751 -35.55152 -33.67281 -32.66895 -31.03009 -30.38425 -29.00430 -26.32667 -25.08704 -23.30395 -22.57443 -21.88150 -20.17069 -19.96734 -19.12023 -16.34686 -15.98422 -15.84552 -15.18522 -14.80796 -14.43764 -14.22403 -14.17537 -13.87852 -13.46886 -13.20983 -13.00813 -12.61730 -12.56952 -12.31374 -11.93695 -11.53880 -11.50381 -11.27857 -11.21177 -11.15252 -10.98797 -10.79499 -10.66593 -10.63281 -10.51945 -10.20153 -10.12715 -9.96777 -9.89817 -8.91596 -8.54827 -8.31319 -8.27029 -5.99556 -4.02155 3.34640 3.41950 3.50770 3.82853 3.99435 4.47923 4.50690 4.54220 4.61590 4.85620 4.95645 5.12025 5.18751 5.23444 5.32645 5.33846 5.37413 5.48467 5.50883 5.53499 5.70748 5.79175 5.84955 5.92479 5.94561 5.98559 6.00646 6.04093 6.07331 6.16795 6.24148 6.31854 6.41730 6.46265 6.66307 6.87586 6.98023 7.20147 7.52816 7.80134 8.04220 8.21280 8.53094 9.07662 9.33589 9.63488 11.08209 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.003472 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.790310 B = 8061.697139 C = 8383.491697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.746 5.746 15 C 0.123 3.877 16 C -0.098 4.098 17 H 0.074 0.926 18 C -0.149 4.149 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.394 0.606 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -0.611 -21.679 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.400 5.400 15 C -0.002 4.002 16 C -0.117 4.117 17 H 0.093 0.907 18 C -0.206 4.206 19 C -0.096 4.096 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.158 4.158 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.228 0.772 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.521 -1.240 -21.443 21.486 hybrid contribution -0.016 0.000 0.763 0.763 sum -0.537 -1.240 -20.681 20.725 Atomic orbital electron populations 1.21732 0.96626 0.99743 1.00838 1.18870 0.94092 0.96804 0.89545 0.93119 1.21211 1.30714 1.12723 0.89047 0.90754 1.24955 0.95178 0.95096 0.99109 1.69884 1.37331 1.23178 1.23346 0.86413 0.78608 0.79807 0.82526 1.19560 1.21078 1.21081 1.21937 0.78494 0.84284 0.84571 1.90522 1.38099 1.26990 1.86870 1.46304 1.55407 1.32627 1.05705 1.21310 0.98834 0.96141 0.83875 1.21405 1.00795 0.95455 0.94042 0.90714 1.21897 1.01027 0.95982 1.01738 1.21113 1.00473 0.94496 0.93540 1.21634 1.00975 0.98719 0.93878 1.21533 1.00664 0.95759 0.97726 1.21540 1.00434 0.95990 0.97745 1.21533 1.00957 0.98564 0.94647 1.21696 1.00800 0.95329 0.97986 0.88909 0.96981 0.95064 0.93085 0.77201 0.91995 0.92459 0.92451 0.92319 0.92593 0.91034 0.92035 0.91673 0.92117 0.92329 0.92439 0.92138 0.92084 0.92181 0.91245 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.72 16 5 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.52 12.10 7.15 -10.98 -0.08 12.02 16 13 O -0.55 -14.74 15.46 5.56 0.09 -14.65 16 14 N -0.75 -13.21 5.18 -60.29 -0.31 -13.52 16 15 C 0.12 1.84 4.85 -4.04 -0.02 1.82 16 16 C -0.10 -1.08 2.01 -90.62 -0.18 -1.26 16 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.54 8.71 37.15 0.32 -1.21 16 19 C -0.08 -0.74 1.77 -90.61 -0.16 -0.90 16 20 C -0.11 -0.95 4.85 -26.73 -0.13 -1.08 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.19 4.86 -26.73 -0.13 -1.32 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.09 7.07 -40.82 -0.29 5.80 16 30 H 0.06 0.98 6.18 -51.93 -0.32 0.66 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.06 0.64 7.18 -51.93 -0.37 0.27 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -31.07 342.27 -8.71 -39.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.09 Total: 1.81 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.15 Total: -10.77 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.32 Total: -38.43 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.07 -8.71 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.814 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds