Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47097 * 119.99875 * 2 1 3 5 5 H 1.07998 * 120.00129 * 119.99586 * 4 2 1 6 6 C 1.37880 * 119.99861 * 300.00304 * 4 2 1 7 7 N 1.31510 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47432 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47062 * 119.99742 * 8 6 4 11 11 H 1.48506 * 109.46890 * 239.99790 * 8 6 4 12 12 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 13 13 O 1.21278 * 119.99985 * 240.00503 * 12 2 1 14 14 N 1.34779 * 119.99944 * 60.00215 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47069 * 304.99442 * 16 15 14 18 18 C 1.52993 * 109.47345 * 65.00000 * 16 15 14 19 19 C 1.53006 * 109.46846 * 185.00008 * 16 15 14 20 20 C 1.53000 * 109.46846 * 179.97438 * 19 16 15 21 21 C 1.53006 * 109.46846 * 179.97438 * 20 19 16 22 22 C 1.52993 * 109.47155 * 59.99875 * 21 20 19 23 23 C 1.53000 * 109.47345 * 299.99819 * 22 21 20 24 24 C 1.53002 * 109.47029 * 60.00302 * 23 22 21 25 25 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 26 26 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 30 30 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 31 31 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 32 32 H 1.09004 * 109.47135 * 179.97438 * 18 16 15 33 33 H 1.09002 * 109.47179 * 299.99584 * 18 16 15 34 34 H 1.08993 * 109.47639 * 59.99724 * 18 16 15 35 35 H 1.09002 * 109.46824 * 299.99583 * 19 16 15 36 36 H 1.09002 * 109.47069 * 299.99434 * 20 19 16 37 37 H 1.09001 * 109.47624 * 59.99715 * 20 19 16 38 38 H 1.09002 * 109.46824 * 299.99583 * 21 20 19 39 39 H 1.08996 * 109.46751 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47179 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47493 * 60.00117 * 22 21 20 42 42 H 1.09002 * 109.47069 * 300.00558 * 23 22 21 43 43 H 1.09001 * 109.47624 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47519 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47254 * 59.99752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1659 -1.5866 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6854 -0.2192 -4.9000 17 1 0.5992 -0.1402 -4.8564 18 6 2.2966 1.1819 -4.9643 19 6 2.0897 -1.0097 -6.1461 20 6 1.5798 -0.2883 -7.3953 21 6 1.9847 -1.0784 -8.6414 22 6 1.3746 -2.4800 -8.5771 23 6 1.8845 -3.2014 -7.3279 24 6 1.4796 -2.4113 -6.0817 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7094 1.1618 3.4844 29 1 1.1489 0.5385 -2.5436 30 1 1.8311 -1.9685 -3.6506 31 1 3.2848 -0.9413 -3.6508 32 1 1.9340 1.6959 -5.8546 33 1 2.0085 1.7451 -4.0766 34 1 3.3827 1.1030 -5.0078 35 1 3.1760 -1.0887 -6.1896 36 1 0.4935 -0.2097 -7.3515 37 1 2.0148 0.7101 -7.4413 38 1 3.0710 -1.1566 -8.6849 39 1 1.6210 -0.5648 -9.5313 40 1 1.6634 -3.0431 -9.4646 41 1 0.2882 -2.4018 -8.5335 42 1 2.9708 -3.2796 -7.3714 43 1 1.4502 -4.2001 -7.2822 44 1 1.8432 -2.9250 -5.1917 45 1 0.3933 -2.3330 -6.0382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598439282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = -104.261940 kcal Electronic energy + Delta-G solvation = -20917.551948 eV Core-core repulsion = 17932.160226 eV Total energy + Delta-G solvation = -2985.391722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79524 -39.80832 -36.71686 -35.75816 -34.05152 -32.37535 -31.68671 -29.86057 -27.57247 -27.15566 -24.60130 -23.53797 -23.06329 -21.36820 -20.81030 -20.50640 -18.37151 -17.74754 -17.06935 -16.39769 -16.38477 -16.02783 -15.40874 -15.04982 -14.73281 -14.68280 -14.64035 -14.28036 -14.02280 -13.70890 -13.46807 -13.25350 -12.97639 -12.79340 -12.68946 -12.58934 -12.30732 -12.21518 -12.10829 -12.06186 -11.97119 -11.92041 -11.60159 -11.26753 -11.03596 -10.89041 -10.71881 -10.58927 -10.27431 -9.89932 -8.15546 -6.25813 1.38818 1.40596 1.54434 1.95249 2.37239 2.56881 3.13834 3.70165 3.72144 3.87145 3.99960 4.18325 4.31838 4.35959 4.44253 4.49160 4.54869 4.69266 4.70734 4.73366 4.75331 4.78186 4.83867 4.94580 4.96237 4.99057 5.03919 5.07835 5.20118 5.22593 5.30677 5.32690 5.36048 5.39920 5.48246 5.50177 5.56932 5.64948 5.67353 5.76031 5.94788 6.22077 6.75833 6.87805 7.40148 7.57063 8.90537 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.003472 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.790310 B = 8061.697139 C = 8383.491697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.122 3.878 16 C -0.086 4.086 17 H 0.084 0.916 18 C -0.148 4.148 19 C -0.073 4.073 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.121 4.121 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 0.175 -23.197 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.472 6.472 14 N -0.376 5.376 15 C -0.001 4.001 16 C -0.105 4.105 17 H 0.102 0.898 18 C -0.205 4.205 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.159 4.159 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.280 -0.411 -23.000 23.040 hybrid contribution 0.215 -0.236 1.197 1.238 sum -1.065 -0.647 -21.804 21.839 Atomic orbital electron populations 1.21549 0.95009 0.99363 1.01739 1.18811 0.95377 0.95887 0.89703 0.94131 1.21336 1.31534 1.12695 0.91258 0.93505 1.25599 0.95193 0.95766 1.01415 1.69953 1.37269 1.23566 1.24255 0.85544 0.78380 0.78584 0.79383 1.20543 1.19874 1.19827 1.21568 0.78257 0.83701 0.85791 1.90498 1.40160 1.28845 1.87648 1.46034 1.54185 1.32502 1.04901 1.21484 0.98186 0.96158 0.84307 1.21346 1.01149 0.95654 0.92373 0.89808 1.21904 1.00781 0.95316 1.02544 1.21075 1.00200 0.94263 0.93643 1.21607 1.01160 0.98923 0.93095 1.21536 1.00643 0.95578 0.97846 1.21533 1.00493 0.96139 0.97362 1.21527 1.00855 0.98641 0.94645 1.21683 1.00777 0.95609 0.97823 0.91053 0.92921 0.95948 0.92580 0.75515 0.92881 0.93667 0.90160 0.92988 0.93040 0.91549 0.91669 0.90857 0.92230 0.91094 0.91558 0.91971 0.92341 0.92082 0.93250 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 2 C 0.02 1.20 2.64 -12.28 -0.03 1.17 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.44 8.37 25.60 0.21 -31.22 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.70 11.32 21.45 0.24 -51.45 16 8 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 9 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.52 24.54 7.15 87.66 0.63 25.17 16 13 O -0.59 -32.78 15.46 -3.02 -0.05 -32.83 16 14 N -0.72 -25.16 5.18 -463.05 -2.40 -27.55 16 15 C 0.12 3.62 4.85 86.38 0.42 4.04 16 16 C -0.09 -1.75 2.01 -10.79 -0.02 -1.77 16 17 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.15 -2.72 8.71 71.98 0.63 -2.09 16 19 C -0.07 -1.28 1.77 -10.79 -0.02 -1.30 16 20 C -0.11 -1.52 4.85 30.60 0.15 -1.37 16 21 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 22 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 23 C -0.12 -1.93 5.92 30.60 0.18 -1.75 16 24 C -0.12 -2.30 4.86 30.60 0.15 -2.15 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.05 1.94 7.56 -2.38 -0.02 1.93 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.41 11.90 7.07 -92.71 -0.66 11.25 16 30 H 0.05 1.70 6.18 -2.39 -0.01 1.69 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.13 6.43 -2.38 -0.02 1.12 16 33 H 0.05 1.03 7.18 -2.39 -0.02 1.01 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.12 6.32 -2.39 -0.02 1.11 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.57 342.27 3.86 -63.71 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.29 Total: 17.78 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.74 Total: -17.29 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.15 Total: -79.01 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.05 Total: -32.83 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.57 3.86 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.548 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds