Wall clock time and date at job start Mon Mar 30 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.47377 * 295.00488 * 4 2 1 6 6 C 1.34778 * 120.00251 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00071 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.46985 * 299.99332 * 8 6 5 10 10 C 1.53001 * 109.47646 * 59.99571 * 8 6 5 11 11 C 1.50706 * 109.47143 * 179.97438 * 8 6 5 12 12 H 1.07999 * 119.99741 * 359.97438 * 11 8 6 13 13 C 1.37873 * 119.99987 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00014 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99939 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47308 * 89.99310 * 15 13 11 17 17 H 1.48502 * 109.47126 * 209.99746 * 15 13 11 18 18 H 1.48503 * 109.47154 * 329.99153 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 0.97006 * 120.00046 * 359.97438 * 5 4 2 31 31 H 1.09002 * 109.46596 * 300.00463 * 10 8 6 32 32 H 1.09006 * 109.46661 * 59.99587 * 10 8 6 33 33 H 1.08993 * 109.47270 * 179.97438 * 10 8 6 34 34 H 0.97004 * 119.99921 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 38 38 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 40 40 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 41 41 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 45 45 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 1.9963 -0.4130 3.6660 7 8 2.6264 -1.4431 3.7793 8 6 1.5981 0.3656 4.8932 9 1 2.0328 1.3642 4.8469 10 6 0.0733 0.4755 4.9551 11 6 2.1003 -0.3448 6.1238 12 1 2.6523 -1.2680 6.0268 13 6 1.8542 0.1832 7.3734 14 7 1.1816 1.3072 7.4914 15 14 2.4762 -0.6977 8.8986 16 1 3.8376 -0.2079 9.2327 17 1 1.5597 -0.4265 10.0352 18 1 2.5254 -2.1593 8.6406 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 1.1487 0.8595 2.3518 31 1 -0.2903 0.9891 4.0650 32 1 -0.3614 -0.5231 5.0013 33 1 -0.2147 1.0383 5.8429 34 1 1.0088 1.6789 8.3706 35 1 1.6766 -1.7488 -1.2492 36 1 3.9337 -1.2342 -0.3595 37 1 3.9329 0.3072 -1.2497 38 1 5.1700 -1.4413 -2.4990 39 1 3.7171 -2.4691 -2.4993 40 1 3.9324 0.3078 -3.7478 41 1 3.9333 -1.2331 -4.6382 42 1 1.6758 -0.2070 -4.6377 43 1 1.6766 -1.7484 -3.7479 44 1 1.8924 1.0280 -2.4980 45 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598439283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:28 Heat of formation + Delta-G solvation = -86.568095 kcal Electronic energy + Delta-G solvation = -20917.169058 eV Core-core repulsion = 17932.544598 eV Total energy + Delta-G solvation = -2984.624459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.55141 -38.45728 -35.54990 -33.67288 -32.66823 -31.03155 -30.38160 -29.00692 -26.32011 -25.08261 -23.31345 -22.57200 -21.88146 -20.17098 -19.97289 -19.10637 -16.33552 -16.03355 -15.84996 -15.13486 -14.79852 -14.43889 -14.23369 -14.16174 -13.90682 -13.45888 -13.27133 -12.92421 -12.64958 -12.55956 -12.30253 -11.95867 -11.56668 -11.42797 -11.28871 -11.22823 -11.15878 -10.96710 -10.80132 -10.66009 -10.65320 -10.52477 -10.19687 -10.12586 -9.96958 -9.89551 -8.92910 -8.54516 -8.31228 -8.26738 -5.99343 -4.02063 3.36297 3.41682 3.49123 3.82817 3.99429 4.47956 4.50639 4.54159 4.61559 4.85694 4.95649 5.12050 5.18779 5.23454 5.32598 5.33995 5.37404 5.48448 5.50928 5.53537 5.70858 5.79383 5.84992 5.92796 5.94609 5.98488 6.00766 6.04131 6.07460 6.16753 6.24181 6.32110 6.41229 6.46573 6.66532 6.87649 6.98104 7.20111 7.52840 7.80272 8.04168 8.21394 8.53128 9.07300 9.33576 9.63521 11.08363 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.003495 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.721367 B = 8009.985673 C = 8480.827904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.123 3.877 5 N -0.746 5.746 6 C 0.518 3.482 7 O -0.549 6.549 8 C 0.028 3.972 9 H 0.051 0.949 10 C -0.131 4.131 11 C -0.499 4.499 12 H 0.074 0.926 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.077 4.077 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.011 0.989 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -0.214 -21.666 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.002 4.002 5 N -0.400 5.400 6 C 0.307 3.693 7 O -0.425 6.425 8 C 0.007 3.993 9 H 0.069 0.931 10 C -0.189 4.189 11 C -0.538 4.538 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.096 4.096 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.028 -0.867 -21.427 21.445 hybrid contribution 0.043 0.019 0.755 0.757 sum 0.015 -0.848 -20.672 20.689 Atomic orbital electron populations 1.21899 0.94862 1.02136 1.01745 1.21403 0.96220 1.00046 0.94021 0.90722 1.21308 0.99633 0.95281 0.83935 1.46304 1.59846 1.27994 1.05895 1.21936 0.77154 0.85679 0.84511 1.90522 1.39970 1.25257 1.86745 1.18865 0.94640 0.96173 0.89604 0.93127 1.21731 0.96296 1.00007 1.00887 1.21167 1.34278 1.09088 0.89244 0.90815 1.24951 0.95208 0.95051 0.99092 1.69874 1.40716 1.19553 1.23609 0.86460 0.78509 0.80247 0.82049 1.20690 1.21324 1.19757 1.21109 0.95316 0.99691 0.93504 1.21695 0.95139 1.00985 0.97987 1.21531 1.00104 0.99438 0.94626 1.21538 0.95760 1.00674 0.97731 1.21532 0.95685 1.00732 0.97734 1.21634 1.00435 0.99290 0.93848 0.92303 0.92459 0.92599 0.92467 0.91992 0.77199 0.96988 0.95068 0.88906 0.93025 0.91030 0.91240 0.91953 0.92180 0.92084 0.92144 0.92438 0.92329 0.92123 0.92043 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.71 37.16 0.32 -1.22 16 2 C -0.10 -1.08 2.01 -90.63 -0.18 -1.26 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.12 1.84 4.85 -4.04 -0.02 1.82 16 5 N -0.75 -13.21 5.18 -60.30 -0.31 -13.52 16 6 C 0.52 12.10 7.15 -10.99 -0.08 12.02 16 7 O -0.55 -14.74 15.46 5.56 0.09 -14.65 16 8 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 9 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 10 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 11 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 12 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 14 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 15 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.08 -0.74 1.78 -90.62 -0.16 -0.90 16 20 C -0.12 -1.19 4.86 -26.73 -0.13 -1.32 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.95 4.85 -26.73 -0.13 -1.08 16 25 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 26 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.98 6.17 -51.93 -0.32 0.66 16 30 H 0.39 6.09 7.07 -40.82 -0.29 5.80 16 31 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -31.04 342.26 -8.71 -39.75 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.09 Total: 1.84 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.15 Total: -10.77 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.32 Total: -38.44 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.04 -8.71 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.816 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds