Wall clock time and date at job start Mon Mar 30 2020 06:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.47377 * 295.00488 * 4 2 1 6 6 C 1.34778 * 120.00251 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00071 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.46985 * 299.99332 * 8 6 5 10 10 C 1.53001 * 109.47646 * 59.99571 * 8 6 5 11 11 C 1.50706 * 109.47143 * 179.97438 * 8 6 5 12 12 H 1.07999 * 119.99741 * 359.97438 * 11 8 6 13 13 C 1.37873 * 119.99987 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00014 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99939 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47308 * 89.99310 * 15 13 11 17 17 H 1.48502 * 109.47126 * 209.99746 * 15 13 11 18 18 H 1.48503 * 109.47154 * 329.99153 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 0.97006 * 120.00046 * 359.97438 * 5 4 2 31 31 H 1.09002 * 109.46596 * 300.00463 * 10 8 6 32 32 H 1.09006 * 109.46661 * 59.99587 * 10 8 6 33 33 H 1.08993 * 109.47270 * 179.97438 * 10 8 6 34 34 H 0.97004 * 119.99921 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 38 38 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 40 40 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 41 41 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 44 44 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 45 45 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 1.9963 -0.4130 3.6660 7 8 2.6264 -1.4431 3.7793 8 6 1.5981 0.3656 4.8932 9 1 2.0328 1.3642 4.8469 10 6 0.0733 0.4755 4.9551 11 6 2.1003 -0.3448 6.1238 12 1 2.6523 -1.2680 6.0268 13 6 1.8542 0.1832 7.3734 14 7 1.1816 1.3072 7.4914 15 14 2.4762 -0.6977 8.8986 16 1 3.8376 -0.2079 9.2327 17 1 1.5597 -0.4265 10.0352 18 1 2.5254 -2.1593 8.6406 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 1.1487 0.8595 2.3518 31 1 -0.2903 0.9891 4.0650 32 1 -0.3614 -0.5231 5.0013 33 1 -0.2147 1.0383 5.8429 34 1 1.0088 1.6789 8.3706 35 1 1.6766 -1.7488 -1.2492 36 1 3.9337 -1.2342 -0.3595 37 1 3.9329 0.3072 -1.2497 38 1 5.1700 -1.4413 -2.4990 39 1 3.7171 -2.4691 -2.4993 40 1 3.9324 0.3078 -3.7478 41 1 3.9333 -1.2331 -4.6382 42 1 1.6758 -0.2070 -4.6377 43 1 1.6766 -1.7484 -3.7479 44 1 1.8924 1.0280 -2.4980 45 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598439283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:27 Heat of formation + Delta-G solvation = -104.210230 kcal Electronic energy + Delta-G solvation = -20917.934078 eV Core-core repulsion = 17932.544598 eV Total energy + Delta-G solvation = -2985.389480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79561 -39.80836 -36.71535 -35.75805 -34.04956 -32.37658 -31.68643 -29.86175 -27.57256 -27.14290 -24.61454 -23.53142 -23.06312 -21.37688 -20.80667 -20.49457 -18.36155 -17.78274 -17.06790 -16.44811 -16.29838 -15.97732 -15.51886 -15.02371 -14.76451 -14.65325 -14.58361 -14.33269 -13.95466 -13.78824 -13.40974 -13.25362 -12.97766 -12.84753 -12.64664 -12.59942 -12.31224 -12.20580 -12.11103 -12.05111 -11.96779 -11.91926 -11.60108 -11.26805 -11.04491 -10.89034 -10.71930 -10.59038 -10.27295 -9.89873 -8.15346 -6.25745 1.40307 1.40635 1.52972 1.95232 2.37158 2.56921 3.14049 3.70168 3.72230 3.87124 3.99970 4.18352 4.31804 4.36130 4.44138 4.49135 4.54932 4.69263 4.70860 4.73407 4.74971 4.78313 4.84673 4.94504 4.95347 4.99283 5.04698 5.07859 5.20381 5.22625 5.30603 5.32991 5.36059 5.39931 5.48263 5.50170 5.57020 5.64936 5.67231 5.76128 5.94787 6.22209 6.75646 6.87717 7.40128 7.57044 8.90539 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.003495 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.721367 B = 8009.985673 C = 8480.827904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.083 0.917 4 C 0.122 3.878 5 N -0.723 5.723 6 C 0.518 3.482 7 O -0.591 6.591 8 C 0.023 3.977 9 H 0.041 0.959 10 C -0.118 4.118 11 C -0.531 4.531 12 H 0.047 0.953 13 C 0.020 3.980 14 N -0.911 5.911 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.279 1.279 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.408 0.592 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 0.557 -23.190 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.001 4.001 5 N -0.376 5.376 6 C 0.307 3.693 7 O -0.472 6.472 8 C 0.002 3.998 9 H 0.059 0.941 10 C -0.176 4.176 11 C -0.569 4.569 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.781 3.219 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.204 1.204 19 C -0.092 4.092 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.245 0.755 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.781 -0.054 -22.991 23.004 hybrid contribution 0.285 -0.205 1.187 1.238 sum -0.496 -0.259 -21.803 21.810 Atomic orbital electron populations 1.21905 0.93903 1.02152 1.02573 1.21345 0.96874 0.99965 0.92348 0.89856 1.21482 0.99241 0.95040 0.84367 1.46035 1.58331 1.28173 1.05084 1.21566 0.77039 0.84981 0.85729 1.90498 1.42105 1.27021 1.87526 1.18809 0.95837 0.95372 0.89756 0.94148 1.21546 0.94715 0.99554 1.01806 1.21308 1.35293 1.08882 0.91443 0.93488 1.25597 0.95203 0.95747 1.01403 1.69947 1.40609 1.20007 1.24475 0.85597 0.78496 0.78710 0.79094 1.19962 1.19801 1.20442 1.21071 0.94993 0.99505 0.93609 1.21683 0.95483 1.00909 0.97827 1.21525 1.00220 0.99303 0.94614 1.21532 0.95977 1.00667 0.97351 1.21535 0.95435 1.00776 0.97855 1.21606 1.00889 0.99218 0.93071 0.92931 0.90178 0.93030 0.93647 0.92904 0.75515 0.92909 0.95973 0.91054 0.92570 0.91528 0.93239 0.91868 0.92086 0.92330 0.91989 0.91554 0.91096 0.92226 0.91695 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.71 71.98 0.63 -2.08 16 2 C -0.09 -1.75 2.01 -10.80 -0.02 -1.77 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.12 3.62 4.85 86.38 0.42 4.04 16 5 N -0.72 -25.15 5.18 -463.07 -2.40 -27.55 16 6 C 0.52 24.53 7.15 87.66 0.63 25.16 16 7 O -0.59 -32.76 15.46 -3.04 -0.05 -32.80 16 8 C 0.02 1.21 2.64 -12.29 -0.03 1.17 16 9 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 10 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 11 C -0.53 -31.49 8.37 25.60 0.21 -31.28 16 12 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 13 C 0.02 1.11 5.30 84.65 0.45 1.56 16 14 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 15 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 19 C -0.07 -1.28 1.78 -10.79 -0.02 -1.30 16 20 C -0.12 -2.30 4.86 30.59 0.15 -2.16 16 21 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 22 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 23 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 24 C -0.11 -1.52 4.85 30.60 0.15 -1.37 16 25 H 0.05 1.03 7.18 -2.38 -0.02 1.01 16 26 H 0.08 1.13 6.43 -2.39 -0.02 1.11 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.70 6.17 -2.39 -0.01 1.68 16 30 H 0.41 11.90 7.07 -92.70 -0.66 11.25 16 31 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 32 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 34 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.12 6.32 -2.39 -0.02 1.11 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 Total: -1.00 -67.50 342.26 3.86 -63.64 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.29 Total: 17.88 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.74 Total: -17.31 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.15 Total: -79.04 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.50 3.86 -63.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.572 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds