Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47202 * 304.99871 * 16 15 14 18 18 C 1.52997 * 109.47278 * 64.99908 * 16 15 14 19 19 C 1.53002 * 109.47424 * 185.00104 * 16 15 14 20 20 C 1.53000 * 109.47457 * 179.97438 * 19 16 15 21 21 C 1.52993 * 109.47039 * 179.97438 * 20 19 16 22 22 C 1.53005 * 109.46863 * 60.00568 * 21 20 19 23 23 C 1.52995 * 109.46969 * 299.99247 * 22 21 20 24 24 C 1.53003 * 109.46777 * 60.00690 * 23 22 21 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.09000 * 109.47034 * 59.99860 * 18 16 15 33 33 H 1.08998 * 109.47416 * 179.97438 * 18 16 15 34 34 H 1.09000 * 109.47472 * 300.00056 * 18 16 15 35 35 H 1.09000 * 109.46741 * 300.00050 * 19 16 15 36 36 H 1.08998 * 109.46798 * 300.00155 * 20 19 16 37 37 H 1.09001 * 109.46765 * 59.99978 * 20 19 16 38 38 H 1.08996 * 109.47944 * 300.00706 * 21 20 19 39 39 H 1.08998 * 109.47067 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46691 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47226 * 59.99918 * 22 21 20 42 42 H 1.08993 * 109.47844 * 300.00064 * 23 22 21 43 43 H 1.08999 * 109.47213 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.46876 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47760 * 59.99990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 1 1.9726 0.8306 4.8567 18 6 0.1594 -0.3276 4.9639 19 6 2.2938 -0.8649 6.1462 20 6 1.7838 -0.1435 7.3954 21 6 2.3930 -0.7891 8.6415 22 6 3.9179 -0.6821 8.5776 23 6 4.4279 -1.4035 7.3285 24 6 3.8187 -0.7578 6.0823 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 1.1487 0.5387 2.5436 30 1 1.8309 -1.9682 3.6507 31 1 3.2846 -0.9410 3.6510 32 1 -0.1290 -1.3779 5.0072 33 1 -0.2043 0.1856 5.8541 34 1 -0.2750 0.1321 4.0761 35 1 2.0054 -1.9151 6.1895 36 1 2.0726 0.9066 7.3518 37 1 0.6975 -0.2201 7.4411 38 1 2.1040 -1.8392 8.6849 39 1 2.0293 -0.2755 9.5314 40 1 4.3519 -1.1417 9.4656 41 1 4.2070 0.3680 8.5343 42 1 4.1390 -2.4535 7.3718 43 1 5.5142 -1.3269 7.2827 44 1 4.1824 -1.2715 5.1923 45 1 4.1078 0.2922 6.0389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598439284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = -86.548781 kcal Electronic energy + Delta-G solvation = -20916.956500 eV Core-core repulsion = 17932.332878 eV Total energy + Delta-G solvation = -2984.623622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55081 -38.45767 -35.54986 -33.67144 -32.66801 -31.03191 -30.38147 -29.00764 -26.31969 -25.08189 -23.31295 -22.57191 -21.88050 -20.17121 -19.97255 -19.10628 -16.33395 -16.03336 -15.84832 -15.13466 -14.79691 -14.44121 -14.23498 -14.16314 -13.90736 -13.45938 -13.27187 -12.92431 -12.65055 -12.55843 -12.29918 -11.95782 -11.56472 -11.42457 -11.28866 -11.22874 -11.15896 -10.95991 -10.80052 -10.67480 -10.64598 -10.52464 -10.20287 -10.12768 -9.97039 -9.89418 -8.93818 -8.54350 -8.31244 -8.26403 -5.99151 -4.01963 3.38985 3.40980 3.46845 3.82837 3.99430 4.47963 4.50642 4.54183 4.61537 4.85683 4.95690 5.12048 5.18829 5.23465 5.32616 5.34040 5.37348 5.48460 5.50937 5.53578 5.70865 5.79344 5.84999 5.92832 5.94588 5.98522 6.00788 6.04151 6.07447 6.16757 6.24194 6.32128 6.41238 6.46567 6.66547 6.87728 6.98148 7.20116 7.52904 7.80320 8.04183 8.21469 8.53208 9.06974 9.33585 9.63504 11.08519 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040409 B = 0.003495 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.742034 B = 8009.829022 C = 8481.068534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.746 5.746 15 C 0.123 3.877 16 C -0.098 4.098 17 H 0.074 0.926 18 C -0.149 4.149 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.261 0.739 29 H 0.394 0.606 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 0.433 21.648 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.400 5.400 15 C -0.002 4.002 16 C -0.117 4.117 17 H 0.093 0.907 18 C -0.206 4.206 19 C -0.096 4.096 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.158 4.158 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.891 -0.190 21.407 21.427 hybrid contribution 0.009 -0.022 -0.749 0.750 sum 0.900 -0.212 20.658 20.679 Atomic orbital electron populations 1.21731 0.96629 0.99735 1.00828 1.18856 0.94088 0.96787 0.89504 0.93128 1.21128 1.30888 1.12779 0.89082 0.90869 1.24953 0.95153 0.95086 0.99084 1.69866 1.37181 1.23154 1.23559 0.86512 0.79284 0.79719 0.81651 1.21405 1.20201 1.20219 1.21937 0.78488 0.84280 0.84573 1.90520 1.38108 1.27002 1.86876 1.46303 1.55439 1.32591 1.05704 1.21309 0.98886 0.96091 0.83875 1.21404 0.95968 1.00276 0.94038 0.90721 1.21897 0.94910 1.02093 1.01740 1.21112 0.94999 0.99971 0.93542 1.21630 1.00119 0.99576 0.93876 1.21532 0.95499 1.00928 0.97726 1.21539 0.95754 1.00668 0.97744 1.21530 0.99828 0.99695 0.94643 1.21698 0.94910 1.01219 0.97988 0.88906 0.95070 0.96993 0.92965 0.77199 0.92472 0.91984 0.92604 0.92461 0.92300 0.91035 0.92034 0.91673 0.92122 0.92330 0.92440 0.92143 0.92076 0.92181 0.91245 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.73 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.92 -0.42 0.90 16 4 C -0.50 -14.50 8.37 -34.44 -0.29 -14.79 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.11 7.15 -10.99 -0.08 12.03 16 13 O -0.55 -14.74 15.46 5.56 0.09 -14.65 16 14 N -0.75 -13.21 5.18 -60.30 -0.31 -13.52 16 15 C 0.12 1.84 4.85 -4.04 -0.02 1.82 16 16 C -0.10 -1.08 2.01 -90.62 -0.18 -1.26 16 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.55 8.71 37.16 0.32 -1.22 16 19 C -0.08 -0.74 1.77 -90.62 -0.16 -0.90 16 20 C -0.11 -0.95 4.85 -26.73 -0.13 -1.08 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.19 4.86 -26.73 -0.13 -1.32 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 6.09 7.07 -40.82 -0.29 5.80 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.98 6.18 -51.93 -0.32 0.66 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -31.02 342.26 -8.71 -39.73 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.09 Total: 1.87 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.15 Total: -10.79 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.32 Total: -38.46 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.02 -8.71 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.819 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds