Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47202 * 304.99871 * 16 15 14 18 18 C 1.52997 * 109.47278 * 64.99908 * 16 15 14 19 19 C 1.53002 * 109.47424 * 185.00104 * 16 15 14 20 20 C 1.53000 * 109.47457 * 179.97438 * 19 16 15 21 21 C 1.52993 * 109.47039 * 179.97438 * 20 19 16 22 22 C 1.53005 * 109.46863 * 60.00568 * 21 20 19 23 23 C 1.52995 * 109.46969 * 299.99247 * 22 21 20 24 24 C 1.53003 * 109.46777 * 60.00690 * 23 22 21 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.09000 * 109.47034 * 59.99860 * 18 16 15 33 33 H 1.08998 * 109.47416 * 179.97438 * 18 16 15 34 34 H 1.09000 * 109.47472 * 300.00056 * 18 16 15 35 35 H 1.09000 * 109.46741 * 300.00050 * 19 16 15 36 36 H 1.08998 * 109.46798 * 300.00155 * 20 19 16 37 37 H 1.09001 * 109.46765 * 59.99978 * 20 19 16 38 38 H 1.08996 * 109.47944 * 300.00706 * 21 20 19 39 39 H 1.08998 * 109.47067 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46691 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47226 * 59.99918 * 22 21 20 42 42 H 1.08993 * 109.47844 * 300.00064 * 23 22 21 43 43 H 1.08999 * 109.47213 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.46876 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47760 * 59.99990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 1 1.9726 0.8306 4.8567 18 6 0.1594 -0.3276 4.9639 19 6 2.2938 -0.8649 6.1462 20 6 1.7838 -0.1435 7.3954 21 6 2.3930 -0.7891 8.6415 22 6 3.9179 -0.6821 8.5776 23 6 4.4279 -1.4035 7.3285 24 6 3.8187 -0.7578 6.0823 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 1.1487 0.5387 2.5436 30 1 1.8309 -1.9682 3.6507 31 1 3.2846 -0.9410 3.6510 32 1 -0.1290 -1.3779 5.0072 33 1 -0.2043 0.1856 5.8541 34 1 -0.2750 0.1321 4.0761 35 1 2.0054 -1.9151 6.1895 36 1 2.0726 0.9066 7.3518 37 1 0.6975 -0.2201 7.4411 38 1 2.1040 -1.8392 8.6849 39 1 2.0293 -0.2755 9.5314 40 1 4.3519 -1.1417 9.4656 41 1 4.2070 0.3680 8.5343 42 1 4.1390 -2.4535 7.3718 43 1 5.5142 -1.3269 7.2827 44 1 4.1824 -1.2715 5.1923 45 1 4.1078 0.2922 6.0389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598439284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = -104.166181 kcal Electronic energy + Delta-G solvation = -20917.720447 eV Core-core repulsion = 17932.332878 eV Total energy + Delta-G solvation = -2985.387570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79572 -39.80809 -36.71553 -35.75682 -34.04935 -32.37696 -31.68689 -29.86250 -27.57214 -27.14267 -24.61395 -23.53141 -23.06290 -21.37711 -20.80699 -20.49434 -18.35877 -17.78231 -17.06662 -16.45025 -16.29823 -15.97875 -15.51951 -15.02494 -14.76467 -14.65346 -14.58251 -14.33097 -13.95469 -13.78649 -13.40748 -13.25277 -12.97570 -12.84759 -12.65273 -12.59619 -12.31370 -12.21006 -12.11228 -12.04553 -11.96411 -11.91943 -11.60090 -11.26842 -11.05366 -10.88990 -10.71918 -10.58968 -10.27297 -9.89885 -8.15209 -6.25712 1.40624 1.42370 1.50969 1.95238 2.37100 2.56954 3.14142 3.70169 3.72223 3.87085 3.99945 4.18373 4.31796 4.36122 4.44120 4.49187 4.54926 4.69197 4.70837 4.73410 4.74954 4.78291 4.84667 4.94459 4.95325 4.99267 5.04709 5.07837 5.20362 5.22623 5.30632 5.33001 5.36028 5.39906 5.48262 5.50141 5.57015 5.64902 5.67213 5.76032 5.94794 6.22234 6.75461 6.87655 7.40037 7.57010 8.90493 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040409 B = 0.003495 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.742034 B = 8009.829022 C = 8481.068534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.122 3.878 16 C -0.087 4.087 17 H 0.083 0.917 18 C -0.148 4.148 19 C -0.073 4.073 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 1.160 23.193 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.571 4.571 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.376 5.376 15 C -0.001 4.001 16 C -0.105 4.105 17 H 0.101 0.899 18 C -0.205 4.205 19 C -0.092 4.092 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.159 4.159 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.145 0.577 22.993 23.001 hybrid contribution 0.248 -0.230 -1.188 1.235 sum 0.394 0.347 21.805 21.811 Atomic orbital electron populations 1.21546 0.95002 0.99338 1.01737 1.18801 0.95384 0.95867 0.89684 0.94163 1.21285 1.31702 1.12795 0.91278 0.93459 1.25601 0.95170 0.95754 1.01404 1.69941 1.37141 1.23561 1.24386 0.85654 0.78680 0.78738 0.78826 1.19790 1.20179 1.20187 1.21565 0.78256 0.83706 0.85788 1.90497 1.40151 1.28845 1.87652 1.46033 1.54217 1.32468 1.04903 1.21482 0.98462 0.95884 0.84303 1.21346 0.96648 1.00165 0.92372 0.89858 1.21903 0.93941 1.02126 1.02563 1.21074 0.94635 0.99825 0.93645 1.21604 1.00587 0.99494 0.93096 1.21534 0.95227 1.00996 0.97845 1.21533 0.95999 1.00633 0.97365 1.21524 0.99897 0.99602 0.94635 1.21686 0.95301 1.01091 0.97832 0.91053 0.95981 0.92914 0.92555 0.75516 0.93647 0.92899 0.93032 0.90181 0.92927 0.91532 0.91688 0.90845 0.92224 0.91096 0.91554 0.91989 0.92320 0.92086 0.93244 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 2 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.53 -31.58 8.37 25.60 0.21 -31.36 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 C 0.52 24.53 7.15 87.66 0.63 25.16 16 13 O -0.59 -32.73 15.46 -3.03 -0.05 -32.78 16 14 N -0.72 -25.16 5.18 -463.07 -2.40 -27.55 16 15 C 0.12 3.62 4.85 86.38 0.42 4.04 16 16 C -0.09 -1.75 2.01 -10.79 -0.02 -1.77 16 17 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 18 C -0.15 -2.71 8.71 71.98 0.63 -2.08 16 19 C -0.07 -1.28 1.77 -10.79 -0.02 -1.30 16 20 C -0.11 -1.52 4.85 30.59 0.15 -1.37 16 21 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 22 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 23 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 24 C -0.12 -2.31 4.86 30.60 0.15 -2.16 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.94 7.56 -2.39 -0.02 1.93 16 28 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.41 11.91 7.07 -92.70 -0.66 11.25 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.70 6.18 -2.39 -0.01 1.68 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.13 6.43 -2.39 -0.02 1.11 16 34 H 0.05 1.03 7.18 -2.39 -0.02 1.01 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.12 6.32 -2.38 -0.02 1.11 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.42 342.26 3.86 -63.56 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.29 Total: 18.03 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.74 Total: -17.36 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.15 Total: -79.08 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -67.42 3.86 -63.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.603 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds