Wall clock time and date at job start Mon Mar 30 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 N 1.46500 * 109.46998 * 295.00080 * 4 2 1 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47592 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99790 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99622 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47089 * 59.99989 * 14 12 10 16 16 H 1.48506 * 109.46650 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47066 * 299.99495 * 14 12 10 18 18 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 19 19 C 1.53005 * 109.47272 * 179.97438 * 18 2 1 20 20 C 1.53001 * 109.47098 * 180.02562 * 19 18 2 21 21 C 1.52996 * 109.46992 * 60.00251 * 20 19 18 22 22 C 1.52995 * 109.47508 * 299.99611 * 21 20 19 23 23 C 1.53002 * 109.47007 * 60.00011 * 22 21 20 24 24 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 26 26 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 27 27 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 28 28 H 1.09000 * 109.47050 * 175.00134 * 4 2 1 29 29 H 0.97010 * 119.99909 * 359.97438 * 5 4 2 30 30 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 31 31 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 32 32 H 1.09004 * 109.47108 * 300.00035 * 9 8 6 33 33 H 1.09000 * 109.46870 * 59.99930 * 9 8 6 34 34 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 35 35 H 1.08990 * 109.47621 * 300.00357 * 18 2 1 36 36 H 1.09000 * 109.47335 * 300.00287 * 19 18 2 37 37 H 1.09002 * 109.47028 * 60.00444 * 19 18 2 38 38 H 1.09000 * 109.46998 * 300.00170 * 20 19 18 39 39 H 1.08998 * 109.47077 * 180.02562 * 20 19 18 40 40 H 1.09010 * 109.47232 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47315 * 60.00114 * 21 20 19 42 42 H 1.09000 * 109.47243 * 300.00547 * 22 21 20 43 43 H 1.09002 * 109.47541 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47407 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.47100 * 60.00331 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0352 2.4424 6 6 1.9963 -0.4131 3.6659 7 8 2.6263 -1.4433 3.7792 8 6 1.5971 0.3648 4.8933 9 6 2.1072 -0.3564 6.1426 10 6 1.7085 0.4219 7.3699 11 1 1.1478 1.3395 7.2689 12 6 2.0605 -0.0368 8.6216 13 7 2.7438 -1.1538 8.7444 14 14 1.5657 0.9276 10.1429 15 1 0.0857 1.0329 10.2025 16 1 2.0609 0.2276 11.3554 17 1 2.1568 2.2884 10.0803 18 6 2.0400 -0.7213 -1.2492 19 6 3.5701 -0.7207 -1.2495 20 6 4.0801 -1.4414 -2.4990 21 6 3.5696 -0.7200 -3.7479 22 6 2.0396 -0.7206 -3.7478 23 6 1.5295 0.0001 -2.4982 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8594 2.3518 30 1 2.0309 1.3636 4.8474 31 1 0.5107 0.4422 4.9370 32 1 1.6730 -1.3551 6.1883 33 1 3.1935 -0.4341 6.0991 34 1 2.9917 -1.4763 9.6250 35 1 1.6767 -1.7488 -1.2493 36 1 3.9330 0.3071 -1.2497 37 1 3.9337 -1.2343 -0.3595 38 1 3.7171 -2.4692 -2.4992 39 1 5.1701 -1.4414 -2.4990 40 1 3.9333 -1.2332 -4.6382 41 1 3.9326 0.3078 -3.7477 42 1 1.6767 -1.7483 -3.7479 43 1 1.6760 -0.2070 -4.6378 44 1 0.4396 -0.0006 -2.4978 45 1 1.8925 1.0280 -2.4980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598439612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:17 Heat of formation + Delta-G solvation = -92.398875 kcal Electronic energy + Delta-G solvation = -20343.082010 eV Core-core repulsion = 17358.204709 eV Total energy + Delta-G solvation = -2984.877301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.73344 -38.73966 -35.77725 -33.41084 -32.96099 -31.14755 -30.88275 -29.21904 -26.94811 -25.24300 -23.17943 -22.58244 -21.38687 -20.38031 -20.06529 -19.36603 -16.84036 -16.14615 -15.73752 -15.39566 -15.15050 -14.64593 -14.42160 -14.32053 -14.05261 -13.79629 -13.44059 -13.16399 -12.83673 -12.68564 -12.30707 -12.13551 -11.95681 -11.62410 -11.39607 -11.34424 -11.29530 -11.12516 -10.92563 -10.87718 -10.64452 -10.59915 -10.24006 -10.07772 -9.91346 -9.62481 -9.14142 -8.95524 -8.66769 -8.28980 -5.93368 -3.97725 3.33620 3.36119 3.40430 3.42162 3.63738 4.37325 4.40171 4.48897 4.51007 4.71262 4.83400 4.97954 5.07544 5.11629 5.21619 5.28400 5.36277 5.38924 5.40416 5.41278 5.55361 5.60699 5.69349 5.76098 5.78393 5.82086 5.89103 5.90842 5.95457 5.99150 6.06822 6.13100 6.21954 6.27418 6.29393 6.31334 6.82692 6.94329 7.77130 7.90321 7.97201 8.10709 8.42101 8.86102 9.11078 9.65486 11.17593 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048008 B = 0.002819 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.102096 B = 9929.866036 C =10281.891427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.121 3.879 5 N -0.744 5.744 6 C 0.508 3.492 7 O -0.537 6.537 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.527 4.527 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.395 0.605 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 3.548 -26.160 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.003 4.003 5 N -0.398 5.398 6 C 0.296 3.704 7 O -0.412 6.412 8 C -0.170 4.170 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.097 4.097 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.097 2.651 -25.928 26.148 hybrid contribution -0.482 0.886 0.799 1.287 sum -2.580 3.537 -25.129 25.507 Atomic orbital electron populations 1.21909 0.94797 1.02250 1.01761 1.21410 0.96239 1.00067 0.93982 0.90644 1.21384 1.00001 0.95338 0.83560 1.46227 1.59584 1.28004 1.05968 1.21539 0.78346 0.85898 0.84611 1.90663 1.39211 1.24651 1.86681 1.21856 1.01870 0.99802 0.93490 1.18887 0.97160 0.95515 0.88469 1.21199 1.35623 1.08525 0.91213 0.92681 1.25032 0.95208 0.95072 0.99108 1.69992 1.38348 1.20981 1.23558 0.86650 0.78826 0.80033 0.82397 1.20263 1.21294 1.20259 1.21116 0.95398 0.99738 0.93421 1.21699 0.95038 1.01006 0.98082 1.21531 1.00190 0.99458 0.94557 1.21541 0.95723 1.00689 0.97779 1.21533 0.95715 1.00762 0.97706 1.21634 1.00418 0.99286 0.93853 0.92480 0.92442 0.92302 0.92052 0.91600 0.77079 0.90354 0.90357 0.95857 0.95859 0.92910 0.90932 0.91939 0.91258 0.92028 0.92102 0.92363 0.92135 0.92079 0.92271 0.91666 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.71 37.16 0.32 -0.92 16 2 C -0.10 -0.88 2.01 -90.62 -0.18 -1.06 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.12 1.53 4.85 -4.04 -0.02 1.51 16 5 N -0.74 -10.66 5.28 -60.29 -0.32 -10.98 16 6 C 0.51 10.05 7.83 -10.99 -0.09 9.96 16 7 O -0.54 -13.04 15.98 5.56 0.09 -12.95 16 8 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.80 13.29 55.43 0.74 -27.07 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 C -0.08 -0.64 1.78 -90.62 -0.16 -0.80 16 19 C -0.12 -1.04 4.86 -26.73 -0.13 -1.17 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -0.82 5.92 -26.74 -0.16 -0.98 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.11 -0.80 4.85 -26.73 -0.13 -0.93 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 26 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 29 H 0.40 4.50 7.66 -40.82 -0.31 4.18 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.68 6.32 -51.93 -0.33 0.35 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -33.54 348.96 -9.11 -42.65 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.30 Total: -1.47 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.55 Total: -12.30 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.42 Total: -38.05 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.54 -9.11 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.751 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds