Wall clock time and date at job start Mon Mar 30 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 N 1.46500 * 109.46998 * 295.00080 * 4 2 1 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47592 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99790 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99980 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99622 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47089 * 59.99989 * 14 12 10 16 16 H 1.48506 * 109.46650 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47066 * 299.99495 * 14 12 10 18 18 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 19 19 C 1.53005 * 109.47272 * 179.97438 * 18 2 1 20 20 C 1.53001 * 109.47098 * 180.02562 * 19 18 2 21 21 C 1.52996 * 109.46992 * 60.00251 * 20 19 18 22 22 C 1.52995 * 109.47508 * 299.99611 * 21 20 19 23 23 C 1.53002 * 109.47007 * 60.00011 * 22 21 20 24 24 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 26 26 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 27 27 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 28 28 H 1.09000 * 109.47050 * 175.00134 * 4 2 1 29 29 H 0.97010 * 119.99909 * 359.97438 * 5 4 2 30 30 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 31 31 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 32 32 H 1.09004 * 109.47108 * 300.00035 * 9 8 6 33 33 H 1.09000 * 109.46870 * 59.99930 * 9 8 6 34 34 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 35 35 H 1.08990 * 109.47621 * 300.00357 * 18 2 1 36 36 H 1.09000 * 109.47335 * 300.00287 * 19 18 2 37 37 H 1.09002 * 109.47028 * 60.00444 * 19 18 2 38 38 H 1.09000 * 109.46998 * 300.00170 * 20 19 18 39 39 H 1.08998 * 109.47077 * 180.02562 * 20 19 18 40 40 H 1.09010 * 109.47232 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.47315 * 60.00114 * 21 20 19 42 42 H 1.09000 * 109.47243 * 300.00547 * 22 21 20 43 43 H 1.09002 * 109.47541 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47407 * 180.02562 * 23 22 21 45 45 H 1.09006 * 109.47100 * 60.00331 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0352 2.4424 6 6 1.9963 -0.4131 3.6659 7 8 2.6263 -1.4433 3.7792 8 6 1.5971 0.3648 4.8933 9 6 2.1072 -0.3564 6.1426 10 6 1.7085 0.4219 7.3699 11 1 1.1478 1.3395 7.2689 12 6 2.0605 -0.0368 8.6216 13 7 2.7438 -1.1538 8.7444 14 14 1.5657 0.9276 10.1429 15 1 0.0857 1.0329 10.2025 16 1 2.0609 0.2276 11.3554 17 1 2.1568 2.2884 10.0803 18 6 2.0400 -0.7213 -1.2492 19 6 3.5701 -0.7207 -1.2495 20 6 4.0801 -1.4414 -2.4990 21 6 3.5696 -0.7200 -3.7479 22 6 2.0396 -0.7206 -3.7478 23 6 1.5295 0.0001 -2.4982 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 1.1488 0.8594 2.3518 30 1 2.0309 1.3636 4.8474 31 1 0.5107 0.4422 4.9370 32 1 1.6730 -1.3551 6.1883 33 1 3.1935 -0.4341 6.0991 34 1 2.9917 -1.4763 9.6250 35 1 1.6767 -1.7488 -1.2493 36 1 3.9330 0.3071 -1.2497 37 1 3.9337 -1.2343 -0.3595 38 1 3.7171 -2.4692 -2.4992 39 1 5.1701 -1.4414 -2.4990 40 1 3.9333 -1.2332 -4.6382 41 1 3.9326 0.3078 -3.7477 42 1 1.6767 -1.7483 -3.7479 43 1 1.6760 -0.2070 -4.6378 44 1 0.4396 -0.0006 -2.4978 45 1 1.8925 1.0280 -2.4980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598439612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:17 Heat of formation + Delta-G solvation = -112.937342 kcal Electronic energy + Delta-G solvation = -20343.972625 eV Core-core repulsion = 17358.204709 eV Total energy + Delta-G solvation = -2985.767916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87849 -39.85882 -36.80372 -35.54941 -34.12634 -32.90576 -31.71709 -29.97083 -28.35933 -26.84956 -24.18762 -23.37942 -22.94263 -21.48160 -20.80534 -20.53712 -18.79576 -17.45744 -17.15893 -16.70394 -16.49310 -16.11387 -15.71655 -15.07801 -14.78776 -14.75468 -14.64703 -14.18641 -14.13150 -13.98696 -13.65447 -13.27695 -13.23030 -12.82692 -12.75743 -12.50762 -12.30918 -12.15547 -12.02224 -11.93613 -11.90525 -11.64222 -11.60650 -11.32316 -11.27956 -10.96574 -10.73943 -10.62232 -10.56046 -10.00554 -8.17683 -6.32076 1.42038 1.46939 1.54636 1.73570 2.29406 2.46200 3.14994 3.68256 3.70688 3.85126 3.98230 4.09904 4.17556 4.30318 4.41936 4.46433 4.51881 4.53802 4.56379 4.68247 4.69644 4.72523 4.76458 4.83299 4.94263 4.98018 5.07072 5.09042 5.19334 5.21710 5.29459 5.32361 5.35073 5.37944 5.47086 5.48435 5.54774 5.58477 5.63442 5.65841 5.85724 6.17834 6.64369 6.86431 7.37022 7.38993 8.94925 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048008 B = 0.002819 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.102096 B = 9929.866036 C =10281.891427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.120 3.880 5 N -0.716 5.716 6 C 0.508 3.492 7 O -0.593 6.593 8 C -0.119 4.119 9 C 0.042 3.958 10 C -0.544 4.544 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.939 5.939 14 Si 0.976 3.024 15 H -0.262 1.262 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.074 4.074 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.415 0.585 30 H 0.104 0.896 31 H 0.104 0.896 32 H -0.019 1.019 33 H -0.019 1.019 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 6.158 -27.345 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.004 4.004 5 N -0.370 5.370 6 C 0.296 3.704 7 O -0.473 6.473 8 C -0.159 4.159 9 C 0.004 3.996 10 C -0.582 4.582 11 H 0.095 0.905 12 C -0.206 4.206 13 N -0.579 5.579 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.252 0.748 30 H 0.122 0.878 31 H 0.122 0.878 32 H -0.001 1.001 33 H -0.001 1.001 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.786 5.315 -27.171 27.944 hybrid contribution 0.062 0.031 1.101 1.103 sum -3.724 5.346 -26.071 26.873 Atomic orbital electron populations 1.21918 0.93777 1.02144 1.02795 1.21344 0.96920 1.00089 0.92101 0.89420 1.21518 0.99440 0.95122 0.84292 1.45933 1.57975 1.28277 1.04782 1.21364 0.77953 0.85062 0.86008 1.90650 1.42028 1.27061 1.87558 1.21633 1.03303 0.99979 0.90971 1.18684 0.94384 0.94376 0.92136 1.21698 1.35531 1.09201 0.91753 0.90526 1.26173 0.94943 0.96100 1.03372 1.70181 1.39906 1.23232 1.24552 0.85352 0.79116 0.78569 0.77067 1.18634 1.21355 1.18621 1.21085 0.94934 0.99517 0.93806 1.21686 0.95535 1.00955 0.97713 1.21531 1.00208 0.99296 0.94760 1.21532 0.96014 1.00685 0.97317 1.21540 0.95399 1.00761 0.97999 1.21605 1.00890 0.99246 0.92987 0.93206 0.92378 0.90310 0.93538 0.92773 0.74767 0.87752 0.87756 1.00071 1.00065 0.92853 0.91682 0.91683 0.93222 0.92459 0.92170 0.91719 0.91901 0.92346 0.91134 0.90798 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.71 71.98 0.63 -1.47 16 2 C -0.09 -1.39 2.01 -10.79 -0.02 -1.41 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 4 C 0.12 3.00 4.85 86.38 0.42 3.42 16 5 N -0.72 -19.73 5.28 -463.06 -2.45 -22.18 16 6 C 0.51 20.25 7.83 87.66 0.69 20.94 16 7 O -0.59 -30.22 15.98 -3.04 -0.05 -30.27 16 8 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 9 C 0.04 2.38 4.26 29.85 0.13 2.51 16 10 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 11 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 12 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 13 N -0.94 -60.45 13.29 21.45 0.28 -60.17 16 14 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 18 C -0.07 -1.12 1.78 -10.79 -0.02 -1.14 16 19 C -0.12 -2.04 4.86 30.60 0.15 -1.89 16 20 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 21 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 22 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 23 C -0.11 -1.27 4.85 30.60 0.15 -1.12 16 24 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.06 0.82 7.18 -2.39 -0.02 0.80 16 26 H 0.08 0.83 6.43 -2.39 -0.02 0.82 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.52 6.17 -2.39 -0.01 1.51 16 29 H 0.41 8.30 7.66 -92.70 -0.71 7.59 16 30 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 32 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 33 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 34 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.02 6.32 -2.39 -0.02 1.00 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -76.07 348.96 3.57 -72.50 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.23 Total: 13.49 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.52 Total: -20.08 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.16 Total: -82.35 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.07 3.57 -72.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598439612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.435 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds