Wall clock time and date at job start Mon Mar 30 2020 07:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47467 * 2 1 4 4 C 1.42902 * 114.00408 * 176.83356 * 3 2 1 5 5 H 1.09007 * 109.46586 * 23.66350 * 4 3 2 6 6 C 1.52993 * 109.47102 * 143.65854 * 4 3 2 7 7 N 1.46502 * 109.47656 * 300.00334 * 6 4 3 8 8 C 1.36931 * 119.99818 * 270.00270 * 7 6 4 9 9 H 1.08005 * 120.00341 * 146.62340 * 8 7 6 10 10 C 1.38817 * 120.00261 * 326.61948 * 8 7 6 11 11 N 1.31615 * 120.00262 * 155.04436 * 10 8 7 12 12 Si 1.86804 * 119.99633 * 335.04209 * 10 8 7 13 13 H 1.48506 * 109.46832 * 95.34206 * 12 10 8 14 14 H 1.48499 * 109.46955 * 215.33857 * 12 10 8 15 15 H 1.48495 * 109.47212 * 335.33977 * 12 10 8 16 16 C 1.46494 * 120.00097 * 89.99583 * 7 6 4 17 17 C 1.54270 * 110.03386 * 117.32322 * 16 7 6 18 18 C 1.54968 * 104.15972 * 95.75515 * 17 16 7 19 19 C 1.54891 * 102.77432 * 37.89005 * 18 17 16 20 20 C 1.53872 * 110.03718 * 234.54155 * 16 7 6 21 21 C 1.52997 * 109.47259 * 263.66424 * 4 3 2 22 22 C 1.52997 * 117.49857 * 7.82070 * 21 4 3 23 23 C 1.53001 * 117.49455 * 299.16306 * 21 4 3 24 24 H 1.09002 * 109.46753 * 300.00363 * 1 2 3 25 25 H 1.08998 * 109.46963 * 59.99653 * 1 2 3 26 26 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47139 * 239.99989 * 2 1 3 28 28 H 1.09006 * 109.47545 * 120.00058 * 2 1 3 29 29 H 1.08999 * 109.47397 * 180.02562 * 6 4 3 30 30 H 1.09008 * 109.47249 * 60.00265 * 6 4 3 31 31 H 0.97000 * 120.00283 * 179.97438 * 11 10 8 32 32 H 1.09004 * 110.01666 * 355.93738 * 16 7 6 33 33 H 1.08994 * 110.49240 * 214.40229 * 17 16 7 34 34 H 1.08998 * 110.48455 * 337.05081 * 17 16 7 35 35 H 1.09000 * 110.71710 * 279.58160 * 18 17 16 36 36 H 1.08997 * 110.92475 * 156.29704 * 18 17 16 37 37 H 1.09002 * 110.48535 * 203.40587 * 19 18 17 38 38 H 1.08998 * 110.59969 * 80.82347 * 19 18 17 39 39 H 1.09004 * 110.02857 * 359.95400 * 20 16 7 40 40 H 1.09000 * 110.03402 * 121.38160 * 20 16 7 41 41 H 1.08990 * 115.55062 * 153.49291 * 21 4 3 42 42 H 1.09007 * 117.49961 * 359.97438 * 22 21 4 43 43 H 1.09002 * 117.50086 * 145.02397 * 22 21 4 44 44 H 1.09000 * 117.49703 * 214.98048 * 23 21 4 45 45 H 1.08997 * 117.50469 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4291 1.4608 0.0721 5 1 3.8860 0.5438 -0.3003 6 6 3.8902 2.6435 -0.7817 7 7 3.4875 2.4276 -2.1737 8 6 4.3267 1.7734 -3.0355 9 1 3.9188 1.1491 -3.8168 10 6 5.7017 1.9126 -2.9052 11 7 6.5040 0.9705 -3.3536 12 14 6.4132 3.4372 -2.0935 13 1 6.6690 3.1595 -0.6572 14 1 7.6877 3.8044 -2.7613 15 1 5.4486 4.5595 -2.2166 16 6 2.1870 2.9113 -2.6434 17 6 2.3844 3.9688 -3.7491 18 6 2.2566 3.1661 -5.0685 19 6 1.1326 2.1509 -4.7443 20 6 1.3917 1.7558 -3.2758 21 6 3.8497 1.6863 1.5257 22 6 2.7682 1.5647 2.6011 23 6 3.3243 2.9408 2.2265 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.9754 2.7299 -0.7271 30 1 3.4333 3.5605 -0.4094 31 1 7.4648 1.0680 -3.2629 32 1 1.6261 3.3399 -1.8128 33 1 1.6083 4.7318 -3.6903 34 1 3.3727 4.4219 -3.6716 35 1 3.1889 2.6500 -5.2977 36 1 1.9639 3.8163 -5.8929 37 1 1.2079 1.2783 -5.3931 38 1 0.1530 2.6178 -4.8467 39 1 1.9738 0.8351 -3.2340 40 1 0.4449 1.6235 -2.7522 41 1 4.8543 1.3501 1.7820 42 1 1.7569 1.3244 2.2729 43 1 3.0614 1.1488 3.5650 44 1 3.9832 3.4296 2.9442 45 1 2.6794 3.6056 1.6520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599296490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:25 Heat of formation + Delta-G solvation = -6.529478 kcal Electronic energy + Delta-G solvation = -22686.408391 eV Core-core repulsion = 19705.254666 eV Total energy + Delta-G solvation = -2981.153725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.85974 -37.54226 -35.52270 -34.17767 -31.58178 -30.72928 -28.38264 -27.78538 -26.67225 -24.04422 -22.53225 -22.17444 -21.69353 -19.93581 -19.52794 -18.78291 -16.56062 -16.34140 -15.83608 -15.17331 -15.07582 -14.55504 -14.18081 -13.98485 -13.44417 -13.25713 -12.74410 -12.55711 -12.30631 -12.12939 -11.88387 -11.63207 -11.35269 -11.06810 -10.87329 -10.82777 -10.70150 -10.50124 -10.32639 -10.27365 -10.17035 -10.00433 -9.95964 -9.73443 -9.64524 -9.50763 -9.28004 -8.92940 -8.38935 -6.74965 -5.94305 -3.26636 3.32811 3.50377 3.55381 4.10726 4.29857 4.56861 4.90183 5.18637 5.31731 5.33232 5.35950 5.41748 5.51830 5.55527 5.58317 5.69334 5.77669 5.86238 5.89940 6.01108 6.09594 6.19941 6.21226 6.25789 6.30443 6.34564 6.41000 6.44561 6.45819 6.49073 6.53061 6.57539 6.63408 6.66589 6.74959 6.81426 6.87330 7.14720 7.18537 7.32583 7.91808 8.11718 8.46268 9.08962 9.81134 10.23101 11.21868 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.010193 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.527744 B = 2746.256877 C = 3940.706836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.103 3.897 5 H 0.071 0.929 6 C 0.146 3.854 7 N -0.593 5.593 8 C -0.250 4.250 9 H 0.084 0.916 10 C 0.030 3.970 11 N -0.901 5.901 12 Si 0.865 3.135 13 H -0.287 1.287 14 H -0.305 1.305 15 H -0.269 1.269 16 C 0.183 3.817 17 C -0.135 4.135 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.176 4.176 22 C -0.174 4.174 23 C -0.174 4.174 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.942 1.192 6.810 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.287 6.287 4 C 0.043 3.957 5 H 0.089 0.911 6 C 0.020 3.980 7 N -0.313 5.313 8 C -0.378 4.378 9 H 0.101 0.899 10 C -0.169 4.169 11 N -0.544 5.544 12 Si 0.696 3.304 13 H -0.216 1.216 14 H -0.233 1.233 15 H -0.194 1.194 16 C 0.076 3.924 17 C -0.175 4.175 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.195 4.195 22 C -0.211 4.211 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.902 1.300 6.742 12.049 hybrid contribution 0.898 0.543 0.547 1.183 sum -9.004 1.844 7.288 11.730 Atomic orbital electron populations 1.21717 0.94829 1.01346 1.02510 1.22358 0.94412 0.85290 0.99587 1.87827 1.21487 1.24962 1.94374 1.22395 0.80767 1.01953 0.90635 0.91132 1.21321 0.98170 0.94064 0.84462 1.44180 1.16455 1.66244 1.04417 1.18731 0.86420 1.20738 1.11957 0.89870 1.25350 0.96194 0.97105 0.98229 1.69893 1.03465 1.31463 1.49531 0.87137 0.78125 0.87284 0.77836 1.21585 1.23315 1.19418 1.20902 0.86287 0.91447 0.93726 1.22826 1.00537 0.97687 0.96412 1.22435 0.99351 0.97197 0.96432 1.22282 0.97614 0.98499 0.97417 1.22489 0.98753 1.01012 0.93997 1.23026 0.98469 1.03002 0.95027 1.22854 0.99446 1.00575 0.98241 1.22816 1.03863 0.91067 1.03316 0.92664 0.91918 0.91994 0.93370 0.94503 0.91839 0.93742 0.92958 0.92710 0.93758 0.91553 0.90222 0.93826 0.92988 0.93340 0.90763 0.93720 0.88069 0.88154 0.89983 0.89729 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.06 0.93 5.73 37.16 0.21 1.14 16 3 O -0.37 -6.45 7.96 -35.23 -0.28 -6.73 16 4 C 0.10 1.96 2.84 -26.74 -0.08 1.89 16 5 H 0.07 1.51 7.75 -51.93 -0.40 1.11 16 6 C 0.15 3.13 4.06 -4.04 -0.02 3.12 16 7 N -0.59 -13.41 1.97 -164.39 -0.32 -13.74 16 8 C -0.25 -6.55 7.88 -15.06 -0.12 -6.67 16 9 H 0.08 2.37 6.65 -52.48 -0.35 2.02 16 10 C 0.03 0.85 5.29 -17.43 -0.09 0.76 16 11 N -0.90 -26.79 13.97 55.49 0.78 -26.02 16 12 Si 0.87 21.83 25.04 -169.99 -4.26 17.57 16 13 H -0.29 -7.07 6.63 56.52 0.37 -6.69 16 14 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.18 3.65 2.91 -66.81 -0.19 3.46 16 17 C -0.14 -2.60 6.17 -25.03 -0.15 -2.75 16 18 C -0.12 -2.14 6.57 -24.69 -0.16 -2.30 16 19 C -0.12 -2.03 6.83 -25.07 -0.17 -2.21 16 20 C -0.12 -2.28 6.12 -25.62 -0.16 -2.43 16 21 C -0.18 -2.90 5.86 -90.62 -0.53 -3.44 16 22 C -0.17 -2.45 9.56 -26.70 -0.26 -2.70 16 23 C -0.17 -2.56 9.68 -26.69 -0.26 -2.82 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.53 7.76 -51.93 -0.40 0.13 16 29 H 0.06 1.50 2.91 -51.93 -0.15 1.35 16 30 H 0.04 0.91 7.06 -51.92 -0.37 0.54 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 32 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 35 H 0.08 1.69 7.04 -51.93 -0.37 1.32 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.56 6.72 -51.93 -0.35 1.21 16 40 H 0.04 0.75 7.82 -51.93 -0.41 0.35 16 41 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.10 1.44 6.43 -51.92 -0.33 1.11 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 1.46 7.55 -51.93 -0.39 1.07 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -27.90 340.70 -8.68 -36.58 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.14 Total: 3.62 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.59 Total: -16.43 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.45 Total: -39.75 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.28 Total: -6.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.26 Total: 17.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.90 -8.68 -36.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599296490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.055 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds