Wall clock time and date at job start Mon Mar 30 2020 07:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47467 * 2 1 4 4 C 1.42902 * 114.00408 * 176.83356 * 3 2 1 5 5 H 1.09007 * 109.46586 * 23.66350 * 4 3 2 6 6 C 1.52993 * 109.47102 * 143.65854 * 4 3 2 7 7 N 1.46502 * 109.47656 * 300.00334 * 6 4 3 8 8 C 1.36931 * 119.99818 * 270.00270 * 7 6 4 9 9 H 1.08005 * 120.00341 * 146.62340 * 8 7 6 10 10 C 1.38817 * 120.00261 * 326.61948 * 8 7 6 11 11 N 1.31615 * 120.00262 * 155.04436 * 10 8 7 12 12 Si 1.86804 * 119.99633 * 335.04209 * 10 8 7 13 13 H 1.48506 * 109.46832 * 95.34206 * 12 10 8 14 14 H 1.48499 * 109.46955 * 215.33857 * 12 10 8 15 15 H 1.48495 * 109.47212 * 335.33977 * 12 10 8 16 16 C 1.46494 * 120.00097 * 89.99583 * 7 6 4 17 17 C 1.54270 * 110.03386 * 117.32322 * 16 7 6 18 18 C 1.54968 * 104.15972 * 95.75515 * 17 16 7 19 19 C 1.54891 * 102.77432 * 37.89005 * 18 17 16 20 20 C 1.53872 * 110.03718 * 234.54155 * 16 7 6 21 21 C 1.52997 * 109.47259 * 263.66424 * 4 3 2 22 22 C 1.52997 * 117.49857 * 7.82070 * 21 4 3 23 23 C 1.53001 * 117.49455 * 299.16306 * 21 4 3 24 24 H 1.09002 * 109.46753 * 300.00363 * 1 2 3 25 25 H 1.08998 * 109.46963 * 59.99653 * 1 2 3 26 26 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47139 * 239.99989 * 2 1 3 28 28 H 1.09006 * 109.47545 * 120.00058 * 2 1 3 29 29 H 1.08999 * 109.47397 * 180.02562 * 6 4 3 30 30 H 1.09008 * 109.47249 * 60.00265 * 6 4 3 31 31 H 0.97000 * 120.00283 * 179.97438 * 11 10 8 32 32 H 1.09004 * 110.01666 * 355.93738 * 16 7 6 33 33 H 1.08994 * 110.49240 * 214.40229 * 17 16 7 34 34 H 1.08998 * 110.48455 * 337.05081 * 17 16 7 35 35 H 1.09000 * 110.71710 * 279.58160 * 18 17 16 36 36 H 1.08997 * 110.92475 * 156.29704 * 18 17 16 37 37 H 1.09002 * 110.48535 * 203.40587 * 19 18 17 38 38 H 1.08998 * 110.59969 * 80.82347 * 19 18 17 39 39 H 1.09004 * 110.02857 * 359.95400 * 20 16 7 40 40 H 1.09000 * 110.03402 * 121.38160 * 20 16 7 41 41 H 1.08990 * 115.55062 * 153.49291 * 21 4 3 42 42 H 1.09007 * 117.49961 * 359.97438 * 22 21 4 43 43 H 1.09002 * 117.50086 * 145.02397 * 22 21 4 44 44 H 1.09000 * 117.49703 * 214.98048 * 23 21 4 45 45 H 1.08997 * 117.50469 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4291 1.4608 0.0721 5 1 3.8860 0.5438 -0.3003 6 6 3.8902 2.6435 -0.7817 7 7 3.4875 2.4276 -2.1737 8 6 4.3267 1.7734 -3.0355 9 1 3.9188 1.1491 -3.8168 10 6 5.7017 1.9126 -2.9052 11 7 6.5040 0.9705 -3.3536 12 14 6.4132 3.4372 -2.0935 13 1 6.6690 3.1595 -0.6572 14 1 7.6877 3.8044 -2.7613 15 1 5.4486 4.5595 -2.2166 16 6 2.1870 2.9113 -2.6434 17 6 2.3844 3.9688 -3.7491 18 6 2.2566 3.1661 -5.0685 19 6 1.1326 2.1509 -4.7443 20 6 1.3917 1.7558 -3.2758 21 6 3.8497 1.6863 1.5257 22 6 2.7682 1.5647 2.6011 23 6 3.3243 2.9408 2.2265 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.9754 2.7299 -0.7271 30 1 3.4333 3.5605 -0.4094 31 1 7.4648 1.0680 -3.2629 32 1 1.6261 3.3399 -1.8128 33 1 1.6083 4.7318 -3.6903 34 1 3.3727 4.4219 -3.6716 35 1 3.1889 2.6500 -5.2977 36 1 1.9639 3.8163 -5.8929 37 1 1.2079 1.2783 -5.3931 38 1 0.1530 2.6178 -4.8467 39 1 1.9738 0.8351 -3.2340 40 1 0.4449 1.6235 -2.7522 41 1 4.8543 1.3501 1.7820 42 1 1.7569 1.3244 2.2729 43 1 3.0614 1.1488 3.5650 44 1 3.9832 3.4296 2.9442 45 1 2.6794 3.6056 1.6520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599296490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:25 Heat of formation + Delta-G solvation = -20.839672 kcal Electronic energy + Delta-G solvation = -22687.028927 eV Core-core repulsion = 19705.254666 eV Total energy + Delta-G solvation = -2981.774261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32845 -39.07738 -36.78502 -35.91844 -33.54386 -32.06118 -29.88437 -29.30538 -28.44116 -25.75156 -23.95589 -23.55602 -22.98521 -21.38815 -20.94263 -20.52768 -18.41302 -17.74981 -17.42661 -16.82749 -16.73097 -15.89610 -15.71455 -15.46736 -14.93312 -14.82905 -14.37721 -14.28624 -13.97888 -13.44427 -13.33160 -13.02201 -12.83870 -12.61123 -12.38441 -12.34854 -12.13052 -11.99758 -11.91640 -11.75680 -11.74373 -11.66072 -11.45613 -11.28747 -11.21706 -11.06850 -10.83850 -10.54646 -10.27708 -8.66670 -8.11632 -5.38688 1.28269 1.40878 1.50260 2.46065 2.85493 2.93463 3.11682 3.40115 3.88714 4.00854 4.03239 4.06517 4.13894 4.25475 4.30125 4.37313 4.49038 4.55864 4.60042 4.68018 4.75316 4.78587 4.81052 4.84848 4.96400 4.97904 5.00260 5.03008 5.07568 5.09174 5.15232 5.19627 5.26464 5.29054 5.29500 5.35940 5.41077 5.57043 5.63024 5.77601 6.04712 6.29745 6.50115 7.09121 7.77656 8.19331 9.08966 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.010193 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.527744 B = 2746.256877 C = 3940.706836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 O -0.369 6.369 4 C 0.116 3.884 5 H 0.034 0.966 6 C 0.142 3.858 7 N -0.601 5.601 8 C -0.216 4.216 9 H 0.051 0.949 10 C -0.025 4.025 11 N -0.951 5.951 12 Si 0.921 3.079 13 H -0.278 1.278 14 H -0.317 1.317 15 H -0.263 1.263 16 C 0.177 3.823 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.201 4.201 22 C -0.152 4.152 23 C -0.166 4.166 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.257 0.743 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 2.576 8.543 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 O -0.288 6.288 4 C 0.055 3.945 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.322 5.322 8 C -0.346 4.346 9 H 0.069 0.931 10 C -0.220 4.220 11 N -0.597 5.597 12 Si 0.753 3.247 13 H -0.206 1.206 14 H -0.247 1.247 15 H -0.187 1.187 16 C 0.071 3.929 17 C -0.172 4.172 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.221 4.221 22 C -0.188 4.188 23 C -0.203 4.203 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.665 2.707 8.502 15.492 hybrid contribution 1.618 0.059 -0.007 1.619 sum -11.046 2.766 8.495 14.207 Atomic orbital electron populations 1.21685 0.92086 1.02920 1.02792 1.22485 0.96476 0.84042 0.98839 1.87793 1.20198 1.26355 1.94492 1.21944 0.81526 0.98949 0.92054 0.94814 1.21340 0.97071 0.95807 0.84117 1.44288 1.16925 1.66215 1.04747 1.18527 0.86632 1.18752 1.10670 0.93109 1.25806 0.96763 0.99220 1.00215 1.70006 1.03412 1.33304 1.52950 0.86202 0.76844 0.84355 0.77342 1.20613 1.24665 1.18706 1.21120 0.84954 0.92249 0.94549 1.22802 1.00041 0.98072 0.96312 1.22375 0.98211 0.97664 0.97113 1.22260 0.98528 0.98281 0.95950 1.22365 0.98825 0.98703 0.95550 1.22868 0.99363 1.05891 0.93938 1.22915 0.98330 0.99688 0.97907 1.22892 1.03616 0.90877 1.02884 0.91394 0.92488 0.89850 0.95985 0.93512 0.94031 0.92206 0.93396 0.91480 0.90437 0.94402 0.94246 0.91166 0.93038 0.90023 0.94340 0.91575 0.88393 0.88159 0.87736 0.87891 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 10.28 71.98 0.74 -2.36 16 2 C 0.06 1.73 5.73 71.98 0.41 2.15 16 3 O -0.37 -12.54 7.96 -148.98 -1.19 -13.73 16 4 C 0.12 4.42 2.84 30.59 0.09 4.50 16 5 H 0.03 1.51 7.75 -2.38 -0.02 1.49 16 6 C 0.14 6.07 4.06 86.38 0.35 6.42 16 7 N -0.60 -27.48 1.97 -674.02 -1.33 -28.81 16 8 C -0.22 -11.78 7.88 84.04 0.66 -11.11 16 9 H 0.05 3.08 6.65 -2.91 -0.02 3.07 16 10 C -0.03 -1.46 5.29 84.86 0.45 -1.01 16 11 N -0.95 -59.40 13.97 21.65 0.30 -59.10 16 12 Si 0.92 46.63 25.04 68.60 1.72 48.35 16 13 H -0.28 -13.49 6.63 99.48 0.66 -12.83 16 14 H -0.32 -16.55 7.11 99.48 0.71 -15.85 16 15 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 16 C 0.18 6.85 2.91 45.72 0.13 6.98 16 17 C -0.13 -4.89 6.17 31.70 0.20 -4.69 16 18 C -0.12 -4.14 6.57 31.91 0.21 -3.93 16 19 C -0.11 -3.58 6.83 31.67 0.22 -3.36 16 20 C -0.12 -4.14 6.12 31.32 0.19 -3.95 16 21 C -0.20 -6.38 5.86 -10.80 -0.06 -6.44 16 22 C -0.15 -3.79 9.56 30.62 0.29 -3.50 16 23 C -0.17 -4.42 9.68 30.62 0.30 -4.12 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.35 7.82 -2.39 -0.02 1.33 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 1.29 7.76 -2.38 -0.02 1.27 16 29 H 0.04 1.97 2.91 -2.39 -0.01 1.97 16 30 H 0.06 2.35 7.06 -2.38 -0.02 2.34 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.04 1.71 7.04 -2.39 -0.02 1.69 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.04 1.65 6.72 -2.38 -0.02 1.63 16 40 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 41 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.10 2.54 6.43 -2.38 -0.02 2.52 16 43 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.09 2.52 7.55 -2.39 -0.02 2.50 16 Total: -1.00 -63.12 340.70 4.57 -58.55 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.89 Total: 19.16 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.17 Total: -24.42 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.02 Total: -87.90 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.19 Total: -13.73 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.72 Total: 48.35 kcal Total: -63.12 4.57 -58.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599296490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.709 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds