Wall clock time and date at job start Mon Mar 30 2020 07:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47117 * 2 1 4 4 C 1.42904 * 113.99778 * 183.55238 * 3 2 1 5 5 H 1.09004 * 109.46767 * 21.39801 * 4 3 2 6 6 C 1.53004 * 109.46549 * 141.39461 * 4 3 2 7 7 N 1.46893 * 109.47304 * 293.64622 * 6 4 3 8 8 C 1.46901 * 111.00127 * 77.52930 * 7 6 4 9 9 C 1.50697 * 109.47711 * 193.71549 * 8 7 6 10 10 H 1.08005 * 119.99457 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00406 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00151 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99827 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47335 * 89.99629 * 13 11 9 15 15 H 1.48500 * 109.46895 * 209.99851 * 13 11 9 16 16 H 1.48498 * 109.47039 * 329.99721 * 13 11 9 17 17 C 1.46900 * 111.00331 * 201.48491 * 7 6 4 18 18 C 1.52997 * 109.47064 * 75.93090 * 17 7 6 19 19 C 1.52999 * 117.49652 * 242.59372 * 18 17 7 20 20 C 1.53002 * 117.49671 * 173.97081 * 18 17 7 21 21 C 1.52993 * 109.47288 * 261.39629 * 4 3 2 22 22 C 1.53002 * 117.50142 * 354.26138 * 21 4 3 23 23 C 1.52995 * 117.50133 * 62.92369 * 21 4 3 24 24 H 1.08994 * 109.47493 * 59.99714 * 1 2 3 25 25 H 1.08999 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47103 * 299.99664 * 1 2 3 27 27 H 1.09009 * 109.47103 * 240.00335 * 2 1 3 28 28 H 1.09004 * 109.47583 * 120.00223 * 2 1 3 29 29 H 1.08994 * 109.46943 * 53.65150 * 6 4 3 30 30 H 1.09006 * 109.46527 * 173.65122 * 6 4 3 31 31 H 1.09001 * 109.46900 * 313.71509 * 8 7 6 32 32 H 1.09004 * 109.47214 * 73.71023 * 8 7 6 33 33 H 0.97000 * 119.99828 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47332 * 195.93686 * 17 7 6 35 35 H 1.08997 * 109.46595 * 315.93182 * 17 7 6 36 36 H 1.09000 * 115.55266 * 28.30412 * 18 17 7 37 37 H 1.09002 * 117.50057 * 0.02562 * 19 18 17 38 38 H 1.09000 * 117.49850 * 145.02982 * 19 18 17 39 39 H 1.08999 * 117.49933 * 214.97758 * 20 18 17 40 40 H 1.09000 * 117.50000 * 0.02562 * 20 18 17 41 41 H 1.09004 * 115.55122 * 208.60115 * 21 4 3 42 42 H 1.08990 * 117.50464 * 215.00584 * 22 21 4 43 43 H 1.09004 * 117.49260 * 0.03330 * 22 21 4 44 44 H 1.08998 * 117.49916 * 359.97438 * 23 21 4 45 45 H 1.09000 * 117.49933 * 144.99732 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4285 1.4609 -0.0809 5 1 3.8430 0.5439 -0.4998 6 6 3.7952 2.6436 -0.9797 7 7 3.3773 2.3586 -2.3588 8 6 1.9299 2.5503 -2.5206 9 6 1.4843 1.9374 -3.8232 10 1 2.2045 1.4541 -4.4668 11 6 0.1573 1.9936 -4.1933 12 7 -0.2314 1.4591 -5.3303 13 14 -1.0881 2.8301 -3.0804 14 1 -1.1846 4.2681 -3.4382 15 1 -2.4157 2.1871 -3.2520 16 1 -0.6542 2.6999 -1.6662 17 6 4.1276 3.1812 -3.3170 18 6 5.5414 2.6183 -3.4752 19 6 6.7092 3.5135 -3.0560 20 6 6.4394 3.2524 -4.5393 21 6 4.0026 1.6871 1.3191 22 6 3.0097 1.8824 2.4667 23 6 3.8015 0.5773 2.3529 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2884 3.5407 -0.6245 30 1 4.8736 2.8003 -0.9519 31 1 1.4052 2.0698 -1.6947 32 1 1.7027 3.6164 -2.5241 33 1 -1.1649 1.4990 -5.5909 34 1 3.6211 3.1679 -4.2821 35 1 4.1835 4.2061 -2.9502 36 1 5.6424 1.5463 -3.3052 37 1 6.4703 4.5034 -2.6672 38 1 7.5788 3.0306 -2.6102 39 1 7.1314 2.5978 -5.0691 40 1 6.0231 4.0710 -5.1264 41 1 4.9354 2.2496 1.3596 42 1 3.2892 2.5731 3.2621 43 1 1.9475 1.8491 2.2243 44 1 3.2599 -0.3139 2.0357 45 1 4.6020 0.4095 3.0734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599307963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:18 Heat of formation + Delta-G solvation = 7.764621 kcal Electronic energy + Delta-G solvation = -21870.565746 eV Core-core repulsion = 18890.031860 eV Total energy + Delta-G solvation = -2980.533886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.13210 -37.57146 -35.71878 -35.19719 -32.42951 -31.10406 -29.00864 -27.75270 -25.11255 -22.78414 -22.56823 -22.05356 -21.88080 -20.56136 -20.05020 -19.61026 -16.78201 -16.55066 -16.09549 -15.41923 -14.91950 -14.50204 -14.31897 -13.91153 -13.71822 -13.45235 -13.05143 -12.58136 -12.35997 -12.11639 -11.95372 -11.78297 -11.46869 -11.38560 -11.31025 -11.23135 -11.03926 -10.80679 -10.67361 -10.52656 -10.33177 -10.16896 -9.79020 -9.73296 -9.64950 -9.45353 -9.27366 -8.72508 -8.39977 -7.29466 -5.95715 -3.90038 3.34392 3.42387 3.49925 3.81200 4.14192 4.23567 4.51703 4.57790 4.94461 5.03325 5.13210 5.21567 5.27767 5.37983 5.38557 5.44191 5.49838 5.63976 5.70241 5.74950 5.81685 5.83949 5.87867 5.90096 5.96544 6.03764 6.12073 6.17999 6.25230 6.28222 6.33976 6.35033 6.39197 6.43670 6.54812 6.62692 6.83049 7.09227 7.26506 7.74255 7.84446 8.03902 8.21046 8.78390 9.14325 9.68115 11.17701 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.009653 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.550090 B = 2899.970799 C = 5035.121012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.128 3.872 5 H 0.071 0.929 6 C 0.058 3.942 7 N -0.522 5.522 8 C 0.146 3.854 9 C -0.501 4.501 10 H 0.077 0.923 11 C 0.068 3.932 12 N -0.906 5.906 13 Si 0.863 3.137 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.256 1.256 17 C 0.089 3.911 18 C -0.130 4.130 19 C -0.193 4.193 20 C -0.182 4.182 21 C -0.173 4.173 22 C -0.167 4.167 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.069 0.931 32 H -0.026 1.026 33 H 0.261 0.739 34 H 0.092 0.908 35 H 0.020 0.980 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 0.162 12.382 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.283 6.283 4 C 0.069 3.931 5 H 0.089 0.911 6 C -0.071 4.071 7 N -0.246 5.246 8 C 0.021 3.979 9 C -0.539 4.539 10 H 0.096 0.904 11 C -0.133 4.133 12 N -0.545 5.545 13 Si 0.691 3.309 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.180 1.180 17 C -0.039 4.039 18 C -0.149 4.149 19 C -0.230 4.230 20 C -0.220 4.220 21 C -0.192 4.192 22 C -0.204 4.204 23 C -0.223 4.223 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.087 0.913 32 H -0.008 1.008 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.244 -0.200 12.182 15.293 hybrid contribution -0.699 1.133 0.624 1.471 sum 8.545 0.934 12.806 15.423 Atomic orbital electron populations 1.21786 0.94402 1.01743 1.03138 1.22502 0.95250 0.84366 0.99554 1.87954 1.20590 1.25953 1.93851 1.21527 0.81416 0.99276 0.90832 0.91061 1.22154 0.99249 0.95514 0.90158 1.61872 1.07465 1.54406 1.00825 1.20607 0.83425 0.94160 0.99749 1.21105 0.94057 1.35634 1.03124 0.90448 1.24840 0.98121 0.95402 0.94895 1.69903 1.16512 1.46121 1.22012 0.87039 0.81184 0.79846 0.82832 1.20762 1.21451 1.18028 1.21622 0.91255 0.92507 0.98522 1.22434 0.91522 0.98889 1.02052 1.23029 1.00808 1.01187 0.98009 1.22892 1.03750 1.03731 0.91629 1.22934 1.00900 1.03268 0.92054 1.22881 0.98961 0.98986 0.99583 1.23023 1.03357 0.93353 1.02549 0.91040 0.91659 0.92753 0.92529 0.94434 0.94947 0.90781 0.91308 1.00816 0.92945 0.88964 0.96186 0.87341 0.89475 0.89556 0.89260 0.89081 0.87584 0.89594 0.87709 0.88922 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 37.16 0.38 -2.08 16 2 C 0.06 0.97 6.25 37.16 0.23 1.20 16 3 O -0.36 -6.57 5.53 -35.23 -0.19 -6.76 16 4 C 0.13 2.06 2.75 -26.73 -0.07 1.98 16 5 H 0.07 1.17 7.65 -51.93 -0.40 0.78 16 6 C 0.06 1.01 4.61 -3.83 -0.02 0.99 16 7 N -0.52 -10.80 4.31 -236.08 -1.02 -11.82 16 8 C 0.15 3.58 3.58 -4.98 -0.02 3.56 16 9 C -0.50 -14.22 8.84 -34.44 -0.30 -14.52 16 10 H 0.08 2.40 7.81 -52.48 -0.41 1.99 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.91 -27.95 13.96 55.43 0.77 -27.17 16 13 Si 0.86 21.83 27.32 -169.99 -4.64 17.19 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.26 -6.24 6.31 56.52 0.36 -5.88 16 17 C 0.09 1.71 5.07 -3.83 -0.02 1.69 16 18 C -0.13 -2.07 5.17 -90.62 -0.47 -2.54 16 19 C -0.19 -2.52 10.12 -26.73 -0.27 -2.80 16 20 C -0.18 -2.51 10.25 -26.73 -0.27 -2.79 16 21 C -0.17 -2.26 5.72 -90.62 -0.52 -2.78 16 22 C -0.17 -2.10 9.87 -26.69 -0.26 -2.36 16 23 C -0.19 -2.15 10.01 -26.70 -0.27 -2.42 16 24 H 0.07 1.38 7.76 -51.93 -0.40 0.97 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.06 0.99 8.03 -51.92 -0.42 0.57 16 28 H 0.04 0.52 5.82 -51.93 -0.30 0.21 16 29 H 0.03 0.59 7.97 -51.93 -0.41 0.18 16 30 H 0.07 1.13 7.23 -51.93 -0.38 0.75 16 31 H 0.07 1.71 4.04 -51.93 -0.21 1.50 16 32 H -0.03 -0.66 7.51 -51.93 -0.39 -1.05 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.09 2.03 6.87 -51.93 -0.36 1.68 16 35 H 0.02 0.37 7.73 -51.93 -0.40 -0.03 16 36 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.25 8.08 -51.93 -0.42 0.84 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.49 7.04 -51.93 -0.37 1.12 16 44 H 0.09 1.09 5.95 -51.93 -0.31 0.78 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -30.22 350.62 -9.93 -40.15 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.15 Total: 4.12 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -1.98 Total: -20.98 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.25 Total: -38.99 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.19 Total: -6.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.64 Total: 17.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.22 -9.93 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.911 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds