Wall clock time and date at job start Mon Mar 30 2020 07:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47117 * 2 1 4 4 C 1.42904 * 113.99778 * 183.55238 * 3 2 1 5 5 H 1.09004 * 109.46767 * 21.39801 * 4 3 2 6 6 C 1.53004 * 109.46549 * 141.39461 * 4 3 2 7 7 N 1.46893 * 109.47304 * 293.64622 * 6 4 3 8 8 C 1.46901 * 111.00127 * 77.52930 * 7 6 4 9 9 C 1.50697 * 109.47711 * 193.71549 * 8 7 6 10 10 H 1.08005 * 119.99457 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00406 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00151 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99827 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47335 * 89.99629 * 13 11 9 15 15 H 1.48500 * 109.46895 * 209.99851 * 13 11 9 16 16 H 1.48498 * 109.47039 * 329.99721 * 13 11 9 17 17 C 1.46900 * 111.00331 * 201.48491 * 7 6 4 18 18 C 1.52997 * 109.47064 * 75.93090 * 17 7 6 19 19 C 1.52999 * 117.49652 * 242.59372 * 18 17 7 20 20 C 1.53002 * 117.49671 * 173.97081 * 18 17 7 21 21 C 1.52993 * 109.47288 * 261.39629 * 4 3 2 22 22 C 1.53002 * 117.50142 * 354.26138 * 21 4 3 23 23 C 1.52995 * 117.50133 * 62.92369 * 21 4 3 24 24 H 1.08994 * 109.47493 * 59.99714 * 1 2 3 25 25 H 1.08999 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47103 * 299.99664 * 1 2 3 27 27 H 1.09009 * 109.47103 * 240.00335 * 2 1 3 28 28 H 1.09004 * 109.47583 * 120.00223 * 2 1 3 29 29 H 1.08994 * 109.46943 * 53.65150 * 6 4 3 30 30 H 1.09006 * 109.46527 * 173.65122 * 6 4 3 31 31 H 1.09001 * 109.46900 * 313.71509 * 8 7 6 32 32 H 1.09004 * 109.47214 * 73.71023 * 8 7 6 33 33 H 0.97000 * 119.99828 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47332 * 195.93686 * 17 7 6 35 35 H 1.08997 * 109.46595 * 315.93182 * 17 7 6 36 36 H 1.09000 * 115.55266 * 28.30412 * 18 17 7 37 37 H 1.09002 * 117.50057 * 0.02562 * 19 18 17 38 38 H 1.09000 * 117.49850 * 145.02982 * 19 18 17 39 39 H 1.08999 * 117.49933 * 214.97758 * 20 18 17 40 40 H 1.09000 * 117.50000 * 0.02562 * 20 18 17 41 41 H 1.09004 * 115.55122 * 208.60115 * 21 4 3 42 42 H 1.08990 * 117.50464 * 215.00584 * 22 21 4 43 43 H 1.09004 * 117.49260 * 0.03330 * 22 21 4 44 44 H 1.08998 * 117.49916 * 359.97438 * 23 21 4 45 45 H 1.09000 * 117.49933 * 144.99732 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4285 1.4609 -0.0809 5 1 3.8430 0.5439 -0.4998 6 6 3.7952 2.6436 -0.9797 7 7 3.3773 2.3586 -2.3588 8 6 1.9299 2.5503 -2.5206 9 6 1.4843 1.9374 -3.8232 10 1 2.2045 1.4541 -4.4668 11 6 0.1573 1.9936 -4.1933 12 7 -0.2314 1.4591 -5.3303 13 14 -1.0881 2.8301 -3.0804 14 1 -1.1846 4.2681 -3.4382 15 1 -2.4157 2.1871 -3.2520 16 1 -0.6542 2.6999 -1.6662 17 6 4.1276 3.1812 -3.3170 18 6 5.5414 2.6183 -3.4752 19 6 6.7092 3.5135 -3.0560 20 6 6.4394 3.2524 -4.5393 21 6 4.0026 1.6871 1.3191 22 6 3.0097 1.8824 2.4667 23 6 3.8015 0.5773 2.3529 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2884 3.5407 -0.6245 30 1 4.8736 2.8003 -0.9519 31 1 1.4052 2.0698 -1.6947 32 1 1.7027 3.6164 -2.5241 33 1 -1.1649 1.4990 -5.5909 34 1 3.6211 3.1679 -4.2821 35 1 4.1835 4.2061 -2.9502 36 1 5.6424 1.5463 -3.3052 37 1 6.4703 4.5034 -2.6672 38 1 7.5788 3.0306 -2.6102 39 1 7.1314 2.5978 -5.0691 40 1 6.0231 4.0710 -5.1264 41 1 4.9354 2.2496 1.3596 42 1 3.2892 2.5731 3.2621 43 1 1.9475 1.8491 2.2243 44 1 3.2599 -0.3139 2.0357 45 1 4.6020 0.4095 3.0734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599307963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:18 Heat of formation + Delta-G solvation = -9.705218 kcal Electronic energy + Delta-G solvation = -21871.323295 eV Core-core repulsion = 18890.031860 eV Total energy + Delta-G solvation = -2981.291435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41127 -38.89124 -36.91337 -36.59445 -34.59403 -32.47538 -30.58553 -29.50578 -26.68609 -24.21103 -23.94549 -23.14580 -22.91287 -22.16137 -21.24085 -21.03866 -18.94382 -17.78490 -17.43966 -16.71943 -16.53853 -16.06698 -15.57518 -15.54508 -15.04744 -14.88690 -14.51079 -14.27861 -13.90123 -13.63141 -13.49709 -13.23001 -12.93964 -12.70302 -12.63189 -12.46731 -12.36575 -12.30665 -12.03379 -11.95254 -11.85870 -11.71307 -11.40315 -11.17317 -11.08675 -10.79881 -10.75694 -10.66582 -10.07346 -8.97638 -8.25196 -6.23948 1.30433 1.32842 1.47250 2.35602 2.70774 2.95682 3.08477 3.10885 3.22464 3.82004 3.98337 4.05051 4.12138 4.12917 4.18321 4.22984 4.31417 4.40108 4.40971 4.49752 4.52850 4.59701 4.69283 4.80552 4.84020 4.87576 4.89564 4.93571 5.00197 5.04204 5.06983 5.13935 5.15519 5.28920 5.30660 5.31556 5.36581 5.41789 5.44056 5.71191 6.06327 6.42234 6.53181 6.72998 6.81049 7.38177 8.91716 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.009653 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.550090 B = 2899.970799 C = 5035.121012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.387 6.387 4 C 0.127 3.873 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.534 5.534 8 C 0.161 3.839 9 C -0.501 4.501 10 H 0.035 0.965 11 C 0.013 3.987 12 N -0.950 5.950 13 Si 0.929 3.071 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.243 1.243 17 C 0.094 3.906 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.180 4.180 21 C -0.179 4.179 22 C -0.169 4.169 23 C -0.171 4.171 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.100 0.900 31 H 0.071 0.929 32 H -0.038 1.038 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 0.699 15.284 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.306 6.306 4 C 0.069 3.931 5 H 0.081 0.919 6 C -0.067 4.067 7 N -0.257 5.257 8 C 0.034 3.966 9 C -0.539 4.539 10 H 0.053 0.947 11 C -0.183 4.183 12 N -0.592 5.592 13 Si 0.754 3.246 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.166 1.166 17 C -0.034 4.034 18 C -0.172 4.172 19 C -0.200 4.200 20 C -0.218 4.218 21 C -0.198 4.198 22 C -0.206 4.206 23 C -0.208 4.208 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.089 0.911 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.729 0.338 15.095 18.522 hybrid contribution -1.075 0.927 -0.347 1.461 sum 9.653 1.264 14.747 17.671 Atomic orbital electron populations 1.21807 0.94292 1.02992 1.01861 1.22555 0.95389 0.83835 0.99865 1.87898 1.21811 1.26911 1.94013 1.21560 0.80704 0.98179 0.92636 0.91935 1.22262 1.00596 0.95852 0.87990 1.61807 1.05352 1.55250 1.03283 1.20320 0.86215 0.92660 0.97400 1.21290 0.93458 1.34990 1.04194 0.94692 1.25651 1.00237 0.96142 0.96307 1.70046 1.17174 1.47918 1.24020 0.85989 0.78614 0.78642 0.81366 1.20293 1.20620 1.16648 1.21507 0.92720 0.93071 0.96065 1.22176 0.90491 0.98822 1.05750 1.23104 0.99277 1.00582 0.97013 1.22997 1.02930 1.03480 0.92379 1.22831 1.01619 1.05092 0.90267 1.22891 0.97870 1.00228 0.99651 1.23090 1.03381 0.92567 1.01716 0.94758 0.89289 0.91341 0.94809 0.91406 0.95767 0.88204 0.91120 1.02053 0.92732 0.93292 0.95447 0.88275 0.88713 0.87122 0.87696 0.89411 0.85786 0.87810 0.89565 0.89326 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 10.28 71.98 0.74 -4.02 16 2 C 0.06 1.90 6.25 71.98 0.45 2.35 16 3 O -0.39 -13.69 5.53 -148.98 -0.82 -14.52 16 4 C 0.13 3.94 2.75 30.59 0.08 4.02 16 5 H 0.06 2.02 7.65 -2.38 -0.02 2.00 16 6 C 0.06 2.06 4.61 86.31 0.40 2.45 16 7 N -0.53 -22.54 4.31 -900.81 -3.89 -26.43 16 8 C 0.16 8.09 3.58 85.56 0.31 8.40 16 9 C -0.50 -29.88 8.84 25.60 0.23 -29.66 16 10 H 0.03 2.33 7.81 -2.91 -0.02 2.30 16 11 C 0.01 0.80 5.47 84.66 0.46 1.26 16 12 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 13 Si 0.93 46.21 27.32 68.60 1.87 48.09 16 14 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.24 -11.47 6.31 99.48 0.63 -10.85 16 17 C 0.09 3.71 5.07 86.30 0.44 4.15 16 18 C -0.15 -4.81 5.17 -10.79 -0.06 -4.86 16 19 C -0.16 -3.78 10.12 30.60 0.31 -3.47 16 20 C -0.18 -4.72 10.25 30.60 0.31 -4.40 16 21 C -0.18 -4.19 5.72 -10.80 -0.06 -4.25 16 22 C -0.17 -3.76 9.87 30.62 0.30 -3.46 16 23 C -0.17 -3.37 10.01 30.62 0.31 -3.06 16 24 H 0.03 1.31 7.76 -2.39 -0.02 1.29 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.03 1.21 8.03 -2.38 -0.02 1.19 16 28 H 0.07 1.74 5.82 -2.39 -0.01 1.72 16 29 H 0.02 0.86 7.97 -2.39 -0.02 0.84 16 30 H 0.10 2.82 7.23 -2.38 -0.02 2.80 16 31 H 0.07 3.57 4.04 -2.39 -0.01 3.56 16 32 H -0.04 -1.99 7.51 -2.38 -0.02 -2.01 16 33 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.05 2.31 6.87 -2.39 -0.02 2.29 16 35 H 0.03 1.01 7.73 -2.39 -0.02 0.99 16 36 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 2.10 8.03 -2.39 -0.02 2.08 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.41 8.14 -2.39 -0.02 2.40 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.12 2.46 8.08 -2.38 -0.02 2.44 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.27 7.04 -2.38 -0.02 2.25 16 44 H 0.09 1.82 5.95 -2.39 -0.01 1.80 16 45 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.56 350.62 2.54 -66.02 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.85 Total: 21.98 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 4.22 Total: -34.55 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -3.59 Total: -87.02 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.82 Total: -14.52 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.87 Total: 48.09 kcal Total: -68.56 2.54 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.315 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds