Wall clock time and date at job start Mon Mar 30 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.46926 * 2 1 4 4 C 1.42899 * 114.00014 * 183.82660 * 3 2 1 5 5 H 1.09000 * 109.46909 * 28.37299 * 4 3 2 6 6 C 1.53000 * 109.47260 * 268.37292 * 4 3 2 7 7 N 1.46893 * 109.47182 * 66.24279 * 6 4 3 8 8 C 1.46900 * 111.00139 * 75.14122 * 7 6 4 9 9 C 1.50702 * 109.47301 * 189.99788 * 8 7 6 10 10 H 1.08004 * 119.99623 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00214 * 179.72401 * 9 8 7 12 12 N 1.31514 * 119.99787 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00174 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47050 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46951 * 120.00085 * 13 11 9 16 16 H 1.48496 * 109.47112 * 240.00368 * 13 11 9 17 17 C 1.46903 * 110.99798 * 199.09769 * 7 6 4 18 18 C 1.52998 * 109.47248 * 66.37795 * 17 7 6 19 19 C 1.52995 * 117.49461 * 243.76363 * 18 17 7 20 20 C 1.52998 * 117.49698 * 175.14269 * 18 17 7 21 21 C 1.53005 * 109.47337 * 148.36960 * 4 3 2 22 22 C 1.53003 * 117.49853 * 3.76469 * 21 4 3 23 23 C 1.53003 * 117.49657 * 295.10684 * 21 4 3 24 24 H 1.08994 * 109.47396 * 184.95174 * 1 2 3 25 25 H 1.08999 * 109.47327 * 304.95751 * 1 2 3 26 26 H 1.09007 * 109.46945 * 64.95606 * 1 2 3 27 27 H 1.08992 * 109.47222 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.46757 * 119.99037 * 2 1 3 29 29 H 1.09004 * 109.46455 * 306.23856 * 6 4 3 30 30 H 1.09006 * 109.46975 * 186.24233 * 6 4 3 31 31 H 1.09005 * 109.46769 * 69.99997 * 8 7 6 32 32 H 1.08998 * 109.47430 * 310.00112 * 8 7 6 33 33 H 0.97006 * 119.99963 * 179.97438 * 12 11 9 34 34 H 1.09006 * 109.46786 * 186.37970 * 17 7 6 35 35 H 1.08996 * 109.47149 * 306.37213 * 17 7 6 36 36 H 1.08996 * 115.55143 * 29.46742 * 18 17 7 37 37 H 1.08996 * 117.50180 * 359.97438 * 19 18 17 38 38 H 1.09006 * 117.49885 * 145.02007 * 19 18 17 39 39 H 1.09000 * 117.49453 * 214.97782 * 20 18 17 40 40 H 1.09000 * 117.50260 * 359.97438 * 20 18 17 41 41 H 1.09000 * 115.55389 * 149.43755 * 21 4 3 42 42 H 1.09002 * 117.49720 * 0.02562 * 22 21 4 43 43 H 1.08996 * 117.49677 * 145.01885 * 22 21 4 44 44 H 1.09001 * 117.49304 * 214.97453 * 23 21 4 45 45 H 1.08998 * 117.50102 * 359.96935 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4280 1.4611 -0.0871 5 1 3.8294 0.5998 -0.6211 6 6 4.0230 1.5105 1.3216 7 7 3.8026 0.2220 1.9917 8 6 4.7161 -0.8045 1.4723 9 6 4.3035 -2.1558 1.9965 10 1 3.4479 -2.2433 2.6497 11 6 5.0144 -3.2812 1.6371 12 7 6.0530 -3.1752 0.8373 13 14 4.5025 -4.9563 2.2863 14 1 3.3112 -4.8056 3.1601 15 1 4.1701 -5.8483 1.1466 16 1 5.6187 -5.5465 3.0678 17 6 3.9356 0.3568 3.4484 18 6 2.8041 1.2360 3.9847 19 6 3.1906 2.5662 4.6342 20 6 2.6996 1.4055 5.5017 21 6 3.7920 2.7426 -0.8397 22 6 2.6458 3.6658 -1.2582 23 6 3.3852 2.8371 -2.3116 24 1 -0.3634 -1.0237 0.0887 25 1 -0.3634 0.5888 0.8422 26 1 -0.3633 0.4351 -0.9311 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 3.5404 2.3041 1.8921 30 1 5.0931 1.7083 1.2573 31 1 5.7330 -0.5838 1.7971 32 1 4.6757 -0.8095 0.3831 33 1 6.5534 -3.9669 0.5847 34 1 3.8804 -0.6288 3.9110 35 1 4.8956 0.8157 3.6848 36 1 1.8745 1.2043 3.4165 37 1 4.2508 2.8148 4.6799 38 1 2.5151 3.4101 4.4934 39 1 1.7011 1.4856 5.9314 40 1 3.4366 0.8903 6.1177 41 1 4.7325 3.2091 -0.5465 42 1 1.6326 3.3604 -0.9969 43 1 2.8325 4.7395 -1.2406 44 1 4.0580 3.3662 -2.9866 45 1 2.8588 1.9862 -2.7440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599307964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:22 Heat of formation + Delta-G solvation = -0.328391 kcal Electronic energy + Delta-G solvation = -21766.613008 eV Core-core repulsion = 18785.728183 eV Total energy + Delta-G solvation = -2980.884825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.85774 -37.45019 -35.79956 -35.14608 -32.53060 -30.87951 -28.75281 -27.42206 -25.06315 -22.96300 -22.38660 -22.05461 -21.81571 -20.72719 -19.86606 -19.52921 -16.65335 -15.95539 -15.81094 -15.29625 -14.92491 -14.69512 -14.38762 -14.03746 -13.51677 -13.33442 -12.89951 -12.56867 -12.35991 -12.00712 -11.81401 -11.69138 -11.31302 -11.25776 -11.24146 -10.96304 -10.90491 -10.86250 -10.66581 -10.55459 -10.40062 -10.12800 -9.99807 -9.77289 -9.53801 -9.40760 -9.23143 -8.74468 -8.45078 -7.15905 -6.05386 -4.06657 3.28650 3.36732 3.41128 3.95965 4.16251 4.36854 4.40197 4.70150 5.03723 5.17997 5.24893 5.26931 5.29741 5.31698 5.51495 5.63688 5.72007 5.77806 5.85128 5.85618 5.86723 5.93340 5.98623 6.04049 6.09413 6.15423 6.21887 6.31595 6.34858 6.36682 6.41661 6.45332 6.49775 6.57192 6.65310 6.85045 6.88089 7.27048 7.33878 7.79025 7.92403 8.07822 8.21680 8.53776 9.02073 9.58081 11.05322 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006977 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.886386 B = 4012.347212 C = 4987.984276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.379 6.379 4 C 0.129 3.871 5 H 0.067 0.933 6 C 0.039 3.961 7 N -0.530 5.530 8 C 0.190 3.810 9 C -0.506 4.506 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.095 3.905 18 C -0.131 4.131 19 C -0.190 4.190 20 C -0.185 4.185 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.179 4.179 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.028 0.972 31 H -0.011 1.011 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.019 0.981 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 10.964 0.068 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.299 6.299 4 C 0.071 3.929 5 H 0.085 0.915 6 C -0.090 4.090 7 N -0.254 5.254 8 C 0.065 3.935 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.033 4.033 18 C -0.150 4.150 19 C -0.227 4.227 20 C -0.222 4.222 21 C -0.172 4.172 22 C -0.201 4.201 23 C -0.216 4.216 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.091 10.846 -0.111 12.959 hybrid contribution 0.975 -0.913 0.410 1.397 sum -6.116 9.932 0.299 11.668 Atomic orbital electron populations 1.21712 0.95451 1.01526 1.01533 1.22627 0.93513 0.83771 1.02335 1.87697 1.20370 1.26918 1.94911 1.21409 0.81871 0.95197 0.94461 0.91503 1.22542 0.97517 0.93597 0.95353 1.62037 1.55091 1.05447 1.02862 1.19774 0.88967 0.89059 0.95655 1.21193 1.13204 0.90901 1.29172 0.91751 1.24980 0.95043 0.99233 0.95266 1.69969 1.18984 1.29435 1.35288 0.86500 0.78514 0.84054 0.78731 1.19610 1.21063 1.21158 1.21541 0.93166 0.99210 0.89413 1.22438 1.01592 0.97212 0.93756 1.23002 1.01151 0.92513 1.06050 1.22896 1.02024 1.02969 0.94351 1.22438 0.99435 0.98724 0.96623 1.22813 0.98288 0.96099 1.02918 1.22902 1.03981 1.03108 0.91625 0.91737 0.92432 0.93352 0.94751 0.89189 0.90945 0.95382 0.99326 0.95195 0.93011 0.89385 0.96319 0.87266 0.89472 0.89534 0.89384 0.89167 0.87429 0.87644 0.89767 0.89341 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.28 37.16 0.38 -1.71 16 2 C 0.05 0.95 6.35 37.16 0.24 1.18 16 3 O -0.38 -6.63 8.34 -35.23 -0.29 -6.92 16 4 C 0.13 2.25 2.66 -26.73 -0.07 2.18 16 5 H 0.07 1.33 6.17 -51.93 -0.32 1.01 16 6 C 0.04 0.71 4.47 -3.83 -0.02 0.69 16 7 N -0.53 -10.91 2.62 -236.07 -0.62 -11.53 16 8 C 0.19 4.76 4.55 -4.97 -0.02 4.74 16 9 C -0.51 -13.64 8.37 -34.44 -0.29 -13.93 16 10 H 0.06 1.73 7.18 -52.48 -0.38 1.35 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 13 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.09 1.82 5.09 -3.82 -0.02 1.80 16 18 C -0.13 -2.10 4.69 -90.62 -0.43 -2.53 16 19 C -0.19 -2.61 9.93 -26.73 -0.27 -2.87 16 20 C -0.18 -2.53 10.25 -26.73 -0.27 -2.81 16 21 C -0.15 -2.25 5.73 -90.61 -0.52 -2.77 16 22 C -0.16 -2.15 9.87 -26.69 -0.26 -2.42 16 23 C -0.18 -2.36 10.24 -26.69 -0.27 -2.63 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 28 H 0.09 1.82 6.51 -51.93 -0.34 1.49 16 29 H 0.07 1.26 6.66 -51.93 -0.35 0.91 16 30 H 0.03 0.52 7.99 -51.93 -0.42 0.11 16 31 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 32 H 0.03 0.80 6.51 -51.93 -0.34 0.46 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.09 1.86 6.64 -51.93 -0.34 1.51 16 35 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 36 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.11 1.47 8.07 -51.93 -0.42 1.05 16 42 H 0.11 1.50 7.03 -51.93 -0.36 1.13 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -27.80 357.54 -10.02 -37.82 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.29 Total: 4.01 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.92 Total: -19.62 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.12 Total: -36.91 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.29 Total: -6.92 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.80 -10.02 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.492 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds