Wall clock time and date at job start Mon Mar 30 2020 07:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.46926 * 2 1 4 4 C 1.42899 * 114.00014 * 183.82660 * 3 2 1 5 5 H 1.09000 * 109.46909 * 28.37299 * 4 3 2 6 6 C 1.53000 * 109.47260 * 268.37292 * 4 3 2 7 7 N 1.46893 * 109.47182 * 66.24279 * 6 4 3 8 8 C 1.46900 * 111.00139 * 75.14122 * 7 6 4 9 9 C 1.50702 * 109.47301 * 189.99788 * 8 7 6 10 10 H 1.08004 * 119.99623 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00214 * 179.72401 * 9 8 7 12 12 N 1.31514 * 119.99787 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00174 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47050 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46951 * 120.00085 * 13 11 9 16 16 H 1.48496 * 109.47112 * 240.00368 * 13 11 9 17 17 C 1.46903 * 110.99798 * 199.09769 * 7 6 4 18 18 C 1.52998 * 109.47248 * 66.37795 * 17 7 6 19 19 C 1.52995 * 117.49461 * 243.76363 * 18 17 7 20 20 C 1.52998 * 117.49698 * 175.14269 * 18 17 7 21 21 C 1.53005 * 109.47337 * 148.36960 * 4 3 2 22 22 C 1.53003 * 117.49853 * 3.76469 * 21 4 3 23 23 C 1.53003 * 117.49657 * 295.10684 * 21 4 3 24 24 H 1.08994 * 109.47396 * 184.95174 * 1 2 3 25 25 H 1.08999 * 109.47327 * 304.95751 * 1 2 3 26 26 H 1.09007 * 109.46945 * 64.95606 * 1 2 3 27 27 H 1.08992 * 109.47222 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.46757 * 119.99037 * 2 1 3 29 29 H 1.09004 * 109.46455 * 306.23856 * 6 4 3 30 30 H 1.09006 * 109.46975 * 186.24233 * 6 4 3 31 31 H 1.09005 * 109.46769 * 69.99997 * 8 7 6 32 32 H 1.08998 * 109.47430 * 310.00112 * 8 7 6 33 33 H 0.97006 * 119.99963 * 179.97438 * 12 11 9 34 34 H 1.09006 * 109.46786 * 186.37970 * 17 7 6 35 35 H 1.08996 * 109.47149 * 306.37213 * 17 7 6 36 36 H 1.08996 * 115.55143 * 29.46742 * 18 17 7 37 37 H 1.08996 * 117.50180 * 359.97438 * 19 18 17 38 38 H 1.09006 * 117.49885 * 145.02007 * 19 18 17 39 39 H 1.09000 * 117.49453 * 214.97782 * 20 18 17 40 40 H 1.09000 * 117.50260 * 359.97438 * 20 18 17 41 41 H 1.09000 * 115.55389 * 149.43755 * 21 4 3 42 42 H 1.09002 * 117.49720 * 0.02562 * 22 21 4 43 43 H 1.08996 * 117.49677 * 145.01885 * 22 21 4 44 44 H 1.09001 * 117.49304 * 214.97453 * 23 21 4 45 45 H 1.08998 * 117.50102 * 359.96935 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4280 1.4611 -0.0871 5 1 3.8294 0.5998 -0.6211 6 6 4.0230 1.5105 1.3216 7 7 3.8026 0.2220 1.9917 8 6 4.7161 -0.8045 1.4723 9 6 4.3035 -2.1558 1.9965 10 1 3.4479 -2.2433 2.6497 11 6 5.0144 -3.2812 1.6371 12 7 6.0530 -3.1752 0.8373 13 14 4.5025 -4.9563 2.2863 14 1 3.3112 -4.8056 3.1601 15 1 4.1701 -5.8483 1.1466 16 1 5.6187 -5.5465 3.0678 17 6 3.9356 0.3568 3.4484 18 6 2.8041 1.2360 3.9847 19 6 3.1906 2.5662 4.6342 20 6 2.6996 1.4055 5.5017 21 6 3.7920 2.7426 -0.8397 22 6 2.6458 3.6658 -1.2582 23 6 3.3852 2.8371 -2.3116 24 1 -0.3634 -1.0237 0.0887 25 1 -0.3634 0.5888 0.8422 26 1 -0.3633 0.4351 -0.9311 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 3.5404 2.3041 1.8921 30 1 5.0931 1.7083 1.2573 31 1 5.7330 -0.5838 1.7971 32 1 4.6757 -0.8095 0.3831 33 1 6.5534 -3.9669 0.5847 34 1 3.8804 -0.6288 3.9110 35 1 4.8956 0.8157 3.6848 36 1 1.8745 1.2043 3.4165 37 1 4.2508 2.8148 4.6799 38 1 2.5151 3.4101 4.4934 39 1 1.7011 1.4856 5.9314 40 1 3.4366 0.8903 6.1177 41 1 4.7325 3.2091 -0.5465 42 1 1.6326 3.3604 -0.9969 43 1 2.8325 4.7395 -1.2406 44 1 4.0580 3.3662 -2.9866 45 1 2.8588 1.9862 -2.7440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599307964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:21 Heat of formation + Delta-G solvation = -13.694338 kcal Electronic energy + Delta-G solvation = -21767.192599 eV Core-core repulsion = 18785.728183 eV Total energy + Delta-G solvation = -2981.464416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28729 -38.78310 -37.04034 -36.69378 -34.59806 -32.24444 -30.27369 -29.29301 -26.70422 -24.70853 -23.63848 -23.15607 -23.00425 -22.27374 -21.21206 -20.97951 -18.67188 -17.45966 -17.14638 -16.72722 -16.67014 -16.15378 -15.73524 -15.45530 -15.08129 -14.87131 -14.37788 -14.09399 -13.86056 -13.57592 -13.44652 -13.22429 -12.94092 -12.67210 -12.54467 -12.35709 -12.31304 -12.27145 -12.12865 -12.09693 -11.90273 -11.74493 -11.30505 -11.17197 -11.08611 -10.89740 -10.68314 -10.58080 -10.25923 -8.90138 -8.20682 -6.29773 1.39001 1.40176 1.53193 2.39121 2.74163 2.95386 3.08164 3.12392 3.23393 3.81259 4.02731 4.04941 4.10324 4.13872 4.19624 4.31753 4.35590 4.44903 4.49754 4.57385 4.60222 4.63542 4.79560 4.80912 4.84906 4.86286 4.92297 4.99593 5.03694 5.07398 5.11380 5.20883 5.26105 5.29370 5.31774 5.32559 5.40733 5.44667 5.45193 5.66031 6.06121 6.34791 6.48637 6.64540 6.87189 7.39906 8.90529 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006977 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.886386 B = 4012.347212 C = 4987.984276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.133 3.867 5 H 0.032 0.968 6 C 0.044 3.956 7 N -0.528 5.528 8 C 0.211 3.789 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.963 3.037 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.099 3.901 18 C -0.150 4.150 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.172 4.172 22 C -0.147 4.147 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.021 0.979 31 H -0.045 1.045 32 H 0.005 0.995 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 12.277 0.769 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 O -0.294 6.294 4 C 0.074 3.926 5 H 0.050 0.950 6 C -0.085 4.085 7 N -0.252 5.252 8 C 0.085 3.915 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.029 4.029 18 C -0.169 4.169 19 C -0.210 4.210 20 C -0.208 4.208 21 C -0.190 4.190 22 C -0.184 4.184 23 C -0.211 4.211 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.039 0.961 31 H -0.028 1.028 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.693 12.177 0.599 14.973 hybrid contribution 1.489 -1.286 0.191 1.977 sum -7.204 10.891 0.791 13.082 Atomic orbital electron populations 1.21657 0.92509 1.02539 1.02553 1.22564 0.95844 0.83544 1.00149 1.87704 1.20239 1.26682 1.94777 1.21324 0.81727 0.95708 0.93815 0.94972 1.22577 0.97358 0.92571 0.95977 1.62012 1.53303 1.05857 1.03997 1.19364 0.87940 0.90181 0.94020 1.21435 1.13017 0.91913 1.28956 0.91931 1.25855 0.94951 1.03238 0.95411 1.70095 1.20159 1.30629 1.36547 0.85418 0.78420 0.79076 0.78255 1.18645 1.20519 1.20592 1.21471 0.94519 0.98698 0.88221 1.22148 0.99979 0.99088 0.95669 1.23070 1.01739 0.92073 1.04124 1.23000 1.03223 1.02193 0.92401 1.22393 1.00861 0.98039 0.97753 1.22852 0.96908 0.97160 1.01504 1.22973 1.04051 1.02975 0.91084 0.90683 0.91845 0.91882 0.96173 0.92245 0.89344 0.96070 1.02773 0.97737 0.92817 0.91956 0.96911 0.88067 0.89377 0.87549 0.87324 0.89106 0.86371 0.88660 0.87174 0.87102 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 10.28 71.98 0.74 -3.02 16 2 C 0.06 2.01 6.35 71.98 0.46 2.46 16 3 O -0.37 -13.17 8.34 -148.98 -1.24 -14.42 16 4 C 0.13 4.76 2.66 30.60 0.08 4.84 16 5 H 0.03 1.37 6.17 -2.39 -0.01 1.36 16 6 C 0.04 1.63 4.47 86.30 0.39 2.02 16 7 N -0.53 -22.73 2.62 -900.78 -2.36 -25.09 16 8 C 0.21 11.22 4.55 85.56 0.39 11.61 16 9 C -0.51 -28.88 8.37 25.60 0.21 -28.67 16 10 H 0.06 3.47 7.18 -2.91 -0.02 3.45 16 11 C 0.00 0.19 5.46 84.65 0.46 0.66 16 12 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 13 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 C 0.10 3.90 5.09 86.30 0.44 4.34 16 18 C -0.15 -4.68 4.69 -10.80 -0.05 -4.73 16 19 C -0.17 -4.32 9.93 30.59 0.30 -4.02 16 20 C -0.17 -4.29 10.25 30.59 0.31 -3.98 16 21 C -0.17 -4.90 5.73 -10.79 -0.06 -4.97 16 22 C -0.15 -3.53 9.87 30.62 0.30 -3.23 16 23 C -0.17 -4.34 10.24 30.62 0.31 -4.02 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.02 0.76 8.00 -2.39 -0.02 0.75 16 28 H 0.06 2.51 6.51 -2.39 -0.02 2.50 16 29 H 0.09 3.03 6.66 -2.38 -0.02 3.01 16 30 H 0.02 0.82 7.99 -2.38 -0.02 0.80 16 31 H -0.05 -2.67 8.12 -2.38 -0.02 -2.69 16 32 H 0.00 0.27 6.51 -2.39 -0.02 0.25 16 33 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 34 H 0.06 2.74 6.64 -2.38 -0.02 2.72 16 35 H 0.01 0.51 7.85 -2.39 -0.02 0.49 16 36 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.09 2.21 8.03 -2.39 -0.02 2.19 16 38 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.12 3.11 8.07 -2.39 -0.02 3.09 16 42 H 0.09 2.51 7.03 -2.39 -0.02 2.49 16 43 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -62.04 357.54 3.92 -58.12 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.93 Total: 21.69 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 4.29 Total: -30.71 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.08 Total: -80.98 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.24 Total: -14.42 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.04 3.92 -58.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.426 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds