Wall clock time and date at job start Mon Mar 30 2020 07:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47248 * 2 1 4 4 C 1.42901 * 113.99930 * 178.65056 * 3 2 1 5 5 H 1.09003 * 109.46864 * 2.47052 * 4 3 2 6 6 C 1.52991 * 109.47343 * 122.47342 * 4 3 2 7 7 N 1.46900 * 109.47197 * 300.00077 * 6 4 3 8 8 C 1.46856 * 110.99602 * 294.20855 * 7 6 4 9 9 C 1.53037 * 109.52222 * 174.16094 * 8 7 6 10 10 C 1.53126 * 109.27738 * 59.17865 * 9 8 7 11 11 C 1.50706 * 109.57264 * 182.40731 * 10 9 8 12 12 H 1.07999 * 119.99722 * 119.71315 * 11 10 9 13 13 C 1.37872 * 120.00242 * 299.71924 * 11 10 9 14 14 N 1.31514 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46848 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47295 * 119.99847 * 15 13 11 18 18 H 1.48506 * 109.46666 * 239.99829 * 15 13 11 19 19 C 1.53112 * 109.16002 * 302.34369 * 10 9 8 20 20 C 1.46845 * 111.00299 * 170.00144 * 7 6 4 21 21 C 1.53002 * 109.47060 * 242.47518 * 4 3 2 22 22 C 1.52991 * 117.50384 * 133.03161 * 21 4 3 23 23 C 1.52996 * 117.50046 * 64.36689 * 21 4 3 24 24 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47337 * 300.00513 * 1 2 3 26 26 H 1.09004 * 109.46990 * 59.99640 * 1 2 3 27 27 H 1.08997 * 109.47100 * 239.99983 * 2 1 3 28 28 H 1.08995 * 109.46910 * 120.00150 * 2 1 3 29 29 H 1.09003 * 109.47378 * 60.00024 * 6 4 3 30 30 H 1.09006 * 109.47481 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46397 * 294.17490 * 8 7 6 32 32 H 1.08994 * 109.46012 * 54.14801 * 8 7 6 33 33 H 1.09005 * 109.50496 * 299.24010 * 9 8 7 34 34 H 1.08996 * 109.50654 * 179.12144 * 9 8 7 35 35 H 1.09000 * 109.52098 * 62.25196 * 10 9 8 36 36 H 0.96991 * 120.00379 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.50903 * 297.71187 * 19 10 9 38 38 H 1.09007 * 109.50232 * 177.59646 * 19 10 9 39 39 H 1.09005 * 109.46299 * 305.85397 * 20 7 6 40 40 H 1.09010 * 109.46313 * 65.83088 * 20 7 6 41 41 H 1.09003 * 115.54783 * 278.70461 * 21 4 3 42 42 H 1.09006 * 117.49999 * 0.02562 * 22 21 4 43 43 H 1.08999 * 117.50480 * 145.02140 * 22 21 4 44 44 H 1.09000 * 117.50210 * 214.97943 * 23 21 4 45 45 H 1.09003 * 117.50245 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4305 1.4602 0.0307 5 1 3.8745 0.4650 0.0041 6 6 3.9048 2.2629 -1.1822 7 7 3.4945 1.5765 -2.4145 8 6 4.1823 0.2863 -2.5521 9 6 3.6257 -0.4631 -3.7648 10 6 3.8347 0.3846 -5.0227 11 6 3.2361 -0.3209 -6.2123 12 1 2.4459 0.1501 -6.7781 13 6 3.6971 -1.5677 -6.5782 14 7 4.6596 -2.1411 -5.8895 15 14 2.9556 -2.4418 -8.0531 16 1 1.8972 -1.5900 -8.6527 17 1 4.0155 -2.6982 -9.0610 18 1 2.3640 -3.7325 -7.6176 19 6 3.1498 1.7410 -4.8341 20 6 3.7201 2.4266 -3.5905 21 6 3.8579 2.1750 1.3142 22 6 5.0018 1.5565 2.1201 23 6 3.5655 1.4757 2.6432 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 3.4608 3.2581 -1.1556 30 1 4.9912 2.3494 -1.1586 31 1 5.2501 0.4567 -2.6893 32 1 4.0221 -0.3083 -1.6528 33 1 2.5606 -0.6461 -3.6221 34 1 4.1471 -1.4138 -3.8759 35 1 4.9017 0.5351 -5.1874 36 1 4.9842 -3.0181 -6.1471 37 1 2.0772 1.5927 -4.7083 38 1 3.3312 2.3651 -5.7092 39 1 3.2244 3.3864 -3.4453 40 1 4.7902 2.5868 -3.7229 41 1 3.7885 3.2626 1.2919 42 1 5.4504 0.6404 1.7357 43 1 5.6849 2.2370 2.6283 44 1 3.3044 2.1032 3.4954 45 1 3.0683 0.5065 2.6033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599357848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:14 Heat of formation + Delta-G solvation = -33.100848 kcal Electronic energy + Delta-G solvation = -21621.890112 eV Core-core repulsion = 18639.584166 eV Total energy + Delta-G solvation = -2982.305946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.23386 -37.63024 -36.19650 -33.94431 -31.82546 -30.75952 -29.76883 -28.32242 -25.49899 -23.03013 -22.68235 -22.43645 -22.03668 -21.04042 -20.20022 -18.55229 -16.74566 -16.36729 -15.88160 -15.38923 -14.85996 -14.57121 -14.16407 -14.11775 -13.63137 -13.22040 -13.02606 -12.58102 -12.45936 -12.35782 -12.14979 -11.70751 -11.66081 -11.41532 -11.24904 -11.13218 -10.92580 -10.80658 -10.65881 -10.50886 -10.22154 -10.17660 -10.14378 -9.94588 -9.38344 -9.15387 -8.91087 -8.64901 -8.27083 -7.64110 -5.95014 -3.99880 3.31664 3.39751 3.44277 3.51468 4.05560 4.34925 4.47490 4.79983 4.84870 4.95634 5.05562 5.27844 5.35376 5.41220 5.50272 5.52253 5.54137 5.64429 5.69097 5.75529 5.81176 5.90766 5.96988 5.99605 6.05586 6.14162 6.17580 6.18672 6.25062 6.33215 6.37031 6.62793 6.68043 6.91007 7.13394 7.20890 7.46893 7.53675 7.68058 7.75872 7.88361 8.08693 8.18696 8.51735 9.04193 9.64450 11.11280 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.004662 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.594488 B = 6003.972528 C = 6304.952959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.127 3.873 5 H 0.062 0.938 6 C 0.050 3.950 7 N -0.527 5.527 8 C 0.055 3.945 9 C -0.102 4.102 10 C 0.048 3.952 11 C -0.508 4.508 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.106 4.106 20 C 0.062 3.938 21 C -0.161 4.161 22 C -0.178 4.178 23 C -0.170 4.170 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.020 0.980 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 6.139 15.043 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.282 6.282 4 C 0.068 3.932 5 H 0.080 0.920 6 C -0.078 4.078 7 N -0.251 5.251 8 C -0.073 4.073 9 C -0.140 4.140 10 C 0.029 3.971 11 C -0.546 4.546 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.143 4.143 20 C -0.065 4.065 21 C -0.180 4.180 22 C -0.215 4.215 23 C -0.207 4.207 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.159 6.040 15.050 16.360 hybrid contribution 0.763 -0.605 -0.772 1.243 sum -1.396 5.435 14.278 15.341 Atomic orbital electron populations 1.21688 0.94212 1.01784 1.02739 1.22485 0.95282 0.84195 0.99610 1.87890 1.19714 1.25884 1.94695 1.21574 0.82344 0.97857 0.91419 0.91960 1.22317 0.97226 0.98122 0.90172 1.61922 1.58088 1.04159 1.00961 1.22333 0.95122 0.89993 0.99816 1.21639 0.99581 1.00635 0.92187 1.18682 0.95417 0.89773 0.93211 1.21263 1.19462 1.01927 1.11935 0.92707 1.24963 0.94996 0.97438 0.96629 1.69885 1.27822 1.15941 1.39622 0.86591 0.79129 0.79626 0.82985 1.19815 1.21165 1.21112 1.21668 1.00466 0.98539 0.93664 1.22097 0.97787 0.95330 0.91310 1.22614 1.03122 0.99773 0.92484 1.23011 0.91500 1.03025 1.03975 1.22816 0.98397 1.02408 0.97106 0.91592 0.92598 0.91546 0.92475 0.94790 0.90740 0.94578 0.96109 0.93180 0.93889 0.89115 0.96237 0.93221 0.92465 0.93289 0.92452 0.96038 0.87514 0.88798 0.88680 0.88880 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 37.16 0.38 -1.43 16 2 C 0.06 0.85 6.35 37.16 0.24 1.09 16 3 O -0.36 -5.60 9.82 -35.23 -0.35 -5.94 16 4 C 0.13 1.77 2.29 -26.73 -0.06 1.71 16 5 H 0.06 0.90 5.68 -51.93 -0.30 0.61 16 6 C 0.05 0.77 4.65 -3.83 -0.02 0.75 16 7 N -0.53 -9.63 4.52 -234.66 -1.06 -10.69 16 8 C 0.05 1.08 5.29 -3.83 -0.02 1.06 16 9 C -0.10 -2.43 5.12 -26.65 -0.14 -2.56 16 10 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 11 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 14 N -0.89 -25.53 11.37 55.43 0.63 -24.90 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 20 C 0.06 1.16 5.46 -3.83 -0.02 1.14 16 21 C -0.16 -1.86 5.35 -90.63 -0.48 -2.35 16 22 C -0.18 -1.77 10.18 -26.70 -0.27 -2.04 16 23 C -0.17 -1.74 10.22 -26.70 -0.27 -2.01 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.91 7.65 -51.93 -0.40 0.51 16 28 H 0.03 0.42 7.82 -51.93 -0.41 0.02 16 29 H 0.07 1.10 7.99 -51.93 -0.41 0.68 16 30 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.92 5.72 -51.93 -0.30 0.62 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.96 8.02 -51.93 -0.42 0.54 16 40 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.96 7.82 -51.93 -0.41 0.55 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -28.64 349.96 -10.33 -38.97 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.41 Total: -0.28 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.40 Total: -18.83 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.43 Total: -35.60 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.35 Total: -5.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.64 -10.33 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599357848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.873 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds