Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47288 * 2 1 4 4 C 1.42895 * 114.00368 * 181.95817 * 3 2 1 5 5 H 1.09000 * 109.47349 * 347.31495 * 4 3 2 6 6 C 1.53003 * 109.47465 * 227.31341 * 4 3 2 7 7 N 1.46905 * 109.47036 * 64.11588 * 6 4 3 8 8 C 1.46847 * 110.99912 * 51.50864 * 7 6 4 9 9 C 1.53043 * 109.52327 * 185.84378 * 8 7 6 10 10 C 1.53124 * 109.27193 * 300.81903 * 9 8 7 11 11 C 1.53098 * 109.15497 * 57.65708 * 10 9 8 12 12 H 1.08997 * 109.50834 * 62.28689 * 11 10 9 13 13 C 1.50703 * 109.48911 * 182.39392 * 11 10 9 14 14 H 1.08000 * 120.00055 * 119.80276 * 13 11 10 15 15 C 1.37875 * 120.00148 * 299.80938 * 13 11 10 16 16 N 1.31511 * 119.99990 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99985 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46768 * 90.00110 * 17 15 13 19 19 H 1.48498 * 109.47069 * 210.00193 * 17 15 13 20 20 H 1.48499 * 109.47024 * 329.99972 * 17 15 13 21 21 C 1.46840 * 111.00116 * 175.71819 * 7 6 4 22 22 C 1.52999 * 109.47063 * 107.31124 * 4 3 2 23 23 C 1.53000 * 117.49912 * 3.31432 * 22 4 3 24 24 C 1.52992 * 117.50333 * 294.64871 * 22 4 3 25 25 H 1.09000 * 109.46674 * 299.99770 * 1 2 3 26 26 H 1.09005 * 109.46851 * 59.99767 * 1 2 3 27 27 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47103 * 240.00342 * 2 1 3 29 29 H 1.08995 * 109.47407 * 120.00162 * 2 1 3 30 30 H 1.08992 * 109.47231 * 304.11675 * 6 4 3 31 31 H 1.08999 * 109.47078 * 184.11167 * 6 4 3 32 32 H 1.09003 * 109.46565 * 305.85557 * 8 7 6 33 33 H 1.08993 * 109.46523 * 65.83576 * 8 7 6 34 34 H 1.08998 * 109.50112 * 60.75582 * 9 8 7 35 35 H 1.08997 * 109.50420 * 180.88174 * 9 8 7 36 36 H 1.09003 * 109.51709 * 177.55543 * 10 9 8 37 37 H 1.08999 * 109.52465 * 297.68796 * 10 9 8 38 38 H 0.97007 * 120.00232 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.46558 * 294.17520 * 21 7 6 40 40 H 1.09007 * 109.46064 * 54.15739 * 21 7 6 41 41 H 1.09003 * 115.54487 * 148.97978 * 22 4 3 42 42 H 1.09000 * 117.50028 * 359.97438 * 23 22 4 43 43 H 1.09000 * 117.49824 * 145.02091 * 23 22 4 44 44 H 1.08999 * 117.50289 * 214.98264 * 24 22 4 45 45 H 1.09009 * 117.49676 * 0.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4301 1.4604 -0.0446 5 1 3.8784 0.4872 0.1556 6 6 3.8955 2.4636 1.0128 7 7 3.5698 1.9514 2.3506 8 6 4.0648 0.5797 2.5238 9 6 3.5835 0.0282 3.8678 10 6 4.1014 0.9240 4.9964 11 6 3.6118 2.3562 4.7659 12 1 2.5225 2.3781 4.7982 13 6 4.1659 3.2560 5.8404 14 1 4.7978 4.0901 5.5734 15 6 3.8661 3.0143 7.1643 16 7 3.0972 1.9982 7.4895 17 14 4.5535 4.1293 8.4962 18 1 3.6070 5.2464 8.7435 19 1 4.7381 3.3506 9.7471 20 1 5.8619 4.6771 8.0565 21 6 4.0923 2.8403 3.3960 22 6 3.8601 1.9443 -1.4309 23 6 2.7562 2.2799 -2.4358 24 6 3.5977 1.0140 -2.6168 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.3911 3.4169 0.8561 31 1 4.9732 2.6048 0.9303 32 1 3.6858 -0.0478 1.7171 33 1 5.1545 0.5813 2.5013 34 1 2.4937 0.0135 3.8858 35 1 3.9640 -0.9842 4.0030 36 1 3.7250 0.5598 5.9524 37 1 5.1913 0.9074 5.0037 38 1 2.8860 1.8284 8.4210 39 1 5.1819 2.8313 3.3693 40 1 3.7331 3.8549 3.2229 41 1 4.7659 2.5501 -1.4573 42 1 1.7237 2.1555 -2.1094 43 1 2.9360 3.1061 -3.1236 44 1 4.3306 1.0079 -3.4236 45 1 3.1183 0.0572 -2.4094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599469923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -28.458976 kcal Electronic energy + Delta-G solvation = -21628.984593 eV Core-core repulsion = 18646.879934 eV Total energy + Delta-G solvation = -2982.104659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45203 -37.69529 -35.90694 -33.85014 -32.04218 -30.91702 -29.91664 -28.20597 -24.99382 -23.94089 -22.95549 -22.17502 -21.70168 -21.12083 -20.02857 -18.56153 -16.56496 -16.44731 -16.34234 -15.38570 -14.73617 -14.48804 -14.19564 -14.03650 -13.62418 -13.34887 -13.02341 -12.62842 -12.49164 -12.26641 -12.18227 -11.80743 -11.60804 -11.51310 -11.33781 -11.08524 -10.99595 -10.92471 -10.66153 -10.60775 -10.37974 -10.15968 -9.83207 -9.76122 -9.42100 -9.26777 -8.92362 -8.65487 -8.26009 -7.55044 -5.93597 -3.99516 3.33419 3.39897 3.42871 3.58701 3.97912 4.35105 4.51041 4.81165 4.84958 4.92737 5.08405 5.20607 5.28677 5.36482 5.40386 5.45895 5.54808 5.58951 5.64828 5.70349 5.80652 5.86784 5.96246 6.00677 6.04593 6.11573 6.14611 6.22837 6.26936 6.32045 6.45450 6.56437 6.73963 6.79021 7.02397 7.26283 7.41839 7.47427 7.72640 7.79677 7.89711 8.13984 8.22045 8.52879 9.04642 9.64526 11.12431 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029958 B = 0.004405 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.429638 B = 6354.765445 C = 6750.123153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.120 3.880 5 H 0.067 0.933 6 C 0.056 3.944 7 N -0.529 5.529 8 C 0.057 3.943 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.069 3.931 22 C -0.173 4.173 23 C -0.162 4.162 24 C -0.184 4.184 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -4.621 -17.336 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.062 3.938 5 H 0.085 0.915 6 C -0.073 4.073 7 N -0.253 5.253 8 C -0.071 4.071 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.053 0.947 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.058 4.058 22 C -0.192 4.192 23 C -0.199 4.199 24 C -0.221 4.221 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.160 -4.557 -17.114 17.749 hybrid contribution 1.548 0.379 0.635 1.716 sum 0.388 -4.178 -16.479 17.005 Atomic orbital electron populations 1.21706 0.94015 1.01791 1.03087 1.22518 0.95509 0.84564 0.99389 1.87967 1.19948 1.25422 1.94488 1.21638 0.82126 0.98558 0.91502 0.91501 1.22252 0.97501 0.98503 0.89023 1.61980 1.59952 1.02208 1.01195 1.22151 0.96270 0.90396 0.98255 1.21663 1.01033 0.97841 0.94858 1.21639 0.97835 0.97057 0.98234 1.18647 0.97065 0.92096 0.88529 0.94728 1.21159 1.30565 1.12314 0.91216 0.92895 1.24927 0.95088 0.95273 0.98530 1.69896 1.36900 1.28403 1.17554 0.86637 0.79391 0.80741 0.81458 1.20711 1.21311 1.20051 1.22302 0.95697 0.95029 0.92781 1.22839 1.00997 1.04181 0.91175 1.22874 0.97733 0.98138 1.01137 1.22971 1.03821 0.95145 1.00188 0.91363 0.92388 0.91612 0.94465 0.93060 0.90216 0.94680 0.92579 0.96164 0.92105 0.93752 0.89168 0.95264 0.93114 0.96481 0.92271 0.87341 0.87599 0.89359 0.89120 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.70 6.31 37.16 0.23 0.94 16 3 O -0.36 -5.23 8.28 -35.23 -0.29 -5.53 16 4 C 0.12 1.63 2.16 -26.73 -0.06 1.57 16 5 H 0.07 0.90 5.46 -51.93 -0.28 0.62 16 6 C 0.06 0.88 4.76 -3.82 -0.02 0.86 16 7 N -0.53 -10.07 4.70 -234.67 -1.10 -11.17 16 8 C 0.06 1.02 5.03 -3.83 -0.02 1.00 16 9 C -0.12 -2.31 6.09 -26.64 -0.16 -2.47 16 10 C -0.11 -2.63 5.03 -26.62 -0.13 -2.77 16 11 C 0.06 1.41 2.26 -91.70 -0.21 1.21 16 12 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.51 -14.28 8.56 -34.44 -0.29 -14.57 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.60 11.36 55.43 0.63 -24.97 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.07 1.50 4.68 -3.84 -0.02 1.48 16 22 C -0.17 -1.98 5.73 -90.62 -0.52 -2.50 16 23 C -0.16 -1.73 9.87 -26.69 -0.26 -1.99 16 24 C -0.18 -1.82 10.24 -26.70 -0.27 -2.09 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.40 6.76 -51.93 -0.35 0.05 16 29 H 0.05 0.68 6.83 -51.93 -0.35 0.32 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.88 4.34 -51.93 -0.23 0.66 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 41 H 0.11 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.11 1.25 7.02 -51.93 -0.36 0.88 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.88 6.76 -51.92 -0.35 0.53 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -28.72 342.94 -10.19 -38.91 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.13 Total: 0.08 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.45 Total: -18.91 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.47 Total: -36.15 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.29 Total: -5.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.72 -10.19 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.450 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds