Wall clock time and date at job start Mon Mar 30 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47288 * 2 1 4 4 C 1.42895 * 114.00368 * 181.95817 * 3 2 1 5 5 H 1.09000 * 109.47349 * 347.31495 * 4 3 2 6 6 C 1.53003 * 109.47465 * 227.31341 * 4 3 2 7 7 N 1.46905 * 109.47036 * 64.11588 * 6 4 3 8 8 C 1.46847 * 110.99912 * 51.50864 * 7 6 4 9 9 C 1.53043 * 109.52327 * 185.84378 * 8 7 6 10 10 C 1.53124 * 109.27193 * 300.81903 * 9 8 7 11 11 C 1.53098 * 109.15497 * 57.65708 * 10 9 8 12 12 H 1.08997 * 109.50834 * 62.28689 * 11 10 9 13 13 C 1.50703 * 109.48911 * 182.39392 * 11 10 9 14 14 H 1.08000 * 120.00055 * 119.80276 * 13 11 10 15 15 C 1.37875 * 120.00148 * 299.80938 * 13 11 10 16 16 N 1.31511 * 119.99990 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99985 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46768 * 90.00110 * 17 15 13 19 19 H 1.48498 * 109.47069 * 210.00193 * 17 15 13 20 20 H 1.48499 * 109.47024 * 329.99972 * 17 15 13 21 21 C 1.46840 * 111.00116 * 175.71819 * 7 6 4 22 22 C 1.52999 * 109.47063 * 107.31124 * 4 3 2 23 23 C 1.53000 * 117.49912 * 3.31432 * 22 4 3 24 24 C 1.52992 * 117.50333 * 294.64871 * 22 4 3 25 25 H 1.09000 * 109.46674 * 299.99770 * 1 2 3 26 26 H 1.09005 * 109.46851 * 59.99767 * 1 2 3 27 27 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47103 * 240.00342 * 2 1 3 29 29 H 1.08995 * 109.47407 * 120.00162 * 2 1 3 30 30 H 1.08992 * 109.47231 * 304.11675 * 6 4 3 31 31 H 1.08999 * 109.47078 * 184.11167 * 6 4 3 32 32 H 1.09003 * 109.46565 * 305.85557 * 8 7 6 33 33 H 1.08993 * 109.46523 * 65.83576 * 8 7 6 34 34 H 1.08998 * 109.50112 * 60.75582 * 9 8 7 35 35 H 1.08997 * 109.50420 * 180.88174 * 9 8 7 36 36 H 1.09003 * 109.51709 * 177.55543 * 10 9 8 37 37 H 1.08999 * 109.52465 * 297.68796 * 10 9 8 38 38 H 0.97007 * 120.00232 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.46558 * 294.17520 * 21 7 6 40 40 H 1.09007 * 109.46064 * 54.15739 * 21 7 6 41 41 H 1.09003 * 115.54487 * 148.97978 * 22 4 3 42 42 H 1.09000 * 117.50028 * 359.97438 * 23 22 4 43 43 H 1.09000 * 117.49824 * 145.02091 * 23 22 4 44 44 H 1.08999 * 117.50289 * 214.98264 * 24 22 4 45 45 H 1.09009 * 117.49676 * 0.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4301 1.4604 -0.0446 5 1 3.8784 0.4872 0.1556 6 6 3.8955 2.4636 1.0128 7 7 3.5698 1.9514 2.3506 8 6 4.0648 0.5797 2.5238 9 6 3.5835 0.0282 3.8678 10 6 4.1014 0.9240 4.9964 11 6 3.6118 2.3562 4.7659 12 1 2.5225 2.3781 4.7982 13 6 4.1659 3.2560 5.8404 14 1 4.7978 4.0901 5.5734 15 6 3.8661 3.0143 7.1643 16 7 3.0972 1.9982 7.4895 17 14 4.5535 4.1293 8.4962 18 1 3.6070 5.2464 8.7435 19 1 4.7381 3.3506 9.7471 20 1 5.8619 4.6771 8.0565 21 6 4.0923 2.8403 3.3960 22 6 3.8601 1.9443 -1.4309 23 6 2.7562 2.2799 -2.4358 24 6 3.5977 1.0140 -2.6168 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.3911 3.4169 0.8561 31 1 4.9732 2.6048 0.9303 32 1 3.6858 -0.0478 1.7171 33 1 5.1545 0.5813 2.5013 34 1 2.4937 0.0135 3.8858 35 1 3.9640 -0.9842 4.0030 36 1 3.7250 0.5598 5.9524 37 1 5.1913 0.9074 5.0037 38 1 2.8860 1.8284 8.4210 39 1 5.1819 2.8313 3.3693 40 1 3.7331 3.8549 3.2229 41 1 4.7659 2.5501 -1.4573 42 1 1.7237 2.1555 -2.1094 43 1 2.9360 3.1061 -3.1236 44 1 4.3306 1.0079 -3.4236 45 1 3.1183 0.0572 -2.4094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599469923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:20 Heat of formation + Delta-G solvation = -44.522775 kcal Electronic energy + Delta-G solvation = -21629.681172 eV Core-core repulsion = 18646.879934 eV Total energy + Delta-G solvation = -2982.801238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63527 -39.15393 -36.81097 -35.65652 -33.74563 -32.06181 -31.71259 -29.50107 -26.96205 -25.38936 -23.90622 -23.38608 -23.00022 -22.51004 -21.11750 -20.35885 -18.42610 -17.58030 -17.45236 -16.92454 -16.32803 -15.60418 -15.55809 -15.46938 -14.99373 -14.90264 -14.52822 -14.10433 -13.89773 -13.69995 -13.36694 -13.25387 -12.87808 -12.78064 -12.73191 -12.56013 -12.37911 -12.29595 -12.10194 -12.01133 -11.75314 -11.73408 -11.39911 -11.23392 -10.97327 -10.69383 -10.60014 -10.35772 -10.24525 -9.07338 -8.07593 -6.21984 1.41492 1.41795 1.52129 2.42898 2.67142 2.98017 3.17524 3.19301 3.78499 3.88563 4.01082 4.13703 4.21452 4.24167 4.32172 4.36132 4.39310 4.43874 4.50119 4.52541 4.60936 4.64876 4.75358 4.85420 4.86873 4.93749 4.96540 5.00348 5.05639 5.09979 5.12393 5.18911 5.28335 5.32764 5.38898 5.40585 5.51781 5.63335 5.96321 6.13029 6.21074 6.34168 6.46140 6.48871 6.90518 7.45872 8.97174 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029958 B = 0.004405 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.429638 B = 6354.765445 C = 6750.123153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.380 6.380 4 C 0.125 3.875 5 H 0.071 0.929 6 C 0.056 3.944 7 N -0.542 5.542 8 C 0.063 3.937 9 C -0.109 4.109 10 C -0.102 4.102 11 C 0.054 3.946 12 H -0.007 1.007 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.083 3.917 22 C -0.184 4.184 23 C -0.165 4.165 24 C -0.168 4.168 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -5.130 -19.139 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.299 6.299 4 C 0.067 3.933 5 H 0.089 0.911 6 C -0.072 4.072 7 N -0.266 5.266 8 C -0.065 4.065 9 C -0.147 4.147 10 C -0.140 4.140 11 C 0.035 3.965 12 H 0.011 0.989 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.045 4.045 22 C -0.203 4.203 23 C -0.202 4.202 24 C -0.205 4.205 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.240 -5.069 -18.937 19.605 hybrid contribution 1.208 0.532 1.186 1.775 sum 0.968 -4.537 -17.751 18.347 Atomic orbital electron populations 1.21711 0.93329 1.02972 1.02309 1.22654 0.96160 0.83692 0.99839 1.87956 1.20478 1.26844 1.94641 1.21567 0.81817 0.97914 0.91987 0.91111 1.22322 0.98232 0.98902 0.87767 1.61887 1.60292 1.02388 1.02039 1.22133 0.96597 0.89992 0.97755 1.21569 1.00137 0.98418 0.94550 1.21439 0.97205 0.96965 0.98430 1.18562 0.94385 0.93095 0.90452 0.98868 1.21523 1.30853 1.12804 0.92396 0.93099 1.25722 0.95336 0.96638 1.00739 1.70042 1.37743 1.29724 1.17987 0.85606 0.78907 0.78862 0.78569 1.20205 1.20771 1.19276 1.21963 0.95352 0.95205 0.91958 1.22773 1.01594 1.05604 0.90311 1.22885 0.96896 0.99335 1.01088 1.23043 1.03390 0.94686 0.99356 0.93515 0.91738 0.89483 0.92324 0.94109 0.91094 0.93517 0.89744 0.95558 0.93415 0.91166 0.92400 0.95795 0.93068 0.96555 0.92919 0.86565 0.88927 0.88169 0.87348 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.05 1.21 6.31 71.98 0.45 1.66 16 3 O -0.38 -10.56 8.28 -148.98 -1.23 -11.79 16 4 C 0.13 3.16 2.16 30.59 0.07 3.22 16 5 H 0.07 1.71 5.46 -2.39 -0.01 1.70 16 6 C 0.06 1.69 4.76 86.30 0.41 2.10 16 7 N -0.54 -20.41 4.70 -896.37 -4.21 -24.62 16 8 C 0.06 2.15 5.03 86.33 0.43 2.59 16 9 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 10 C -0.10 -5.03 5.03 30.67 0.15 -4.87 16 11 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 12 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 13 C -0.54 -30.62 8.56 25.60 0.22 -30.41 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.82 5.30 84.65 0.45 1.26 16 16 N -0.92 -54.21 11.36 21.45 0.24 -53.97 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 C 0.08 3.67 4.68 86.33 0.40 4.08 16 22 C -0.18 -3.74 5.73 -10.80 -0.06 -3.80 16 23 C -0.17 -3.14 9.87 30.62 0.30 -2.84 16 24 C -0.17 -2.76 10.24 30.62 0.31 -2.45 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.09 6.76 -2.38 -0.02 1.07 16 29 H 0.04 1.01 6.83 -2.39 -0.02 0.99 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.45 4.34 -2.39 -0.01 2.44 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 3.21 6.16 -2.39 -0.01 3.20 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 2.35 8.12 -2.38 -0.02 2.33 16 41 H 0.12 2.18 8.07 -2.39 -0.02 2.16 16 42 H 0.09 2.03 7.02 -2.39 -0.02 2.02 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 1.48 6.76 -2.38 -0.02 1.46 16 Total: -1.00 -63.12 342.94 1.80 -61.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.93 Total: 15.60 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.05 Total: -33.02 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.97 Total: -78.59 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.23 Total: -11.79 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.12 1.80 -61.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.790 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds