Wall clock time and date at job start Mon Mar 30 2020 07:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47603 * 2 1 4 4 C 1.42899 * 114.00192 * 178.58713 * 3 2 1 5 5 H 1.08994 * 109.46940 * 22.75332 * 4 3 2 6 6 C 1.52999 * 109.46750 * 142.75491 * 4 3 2 7 7 N 1.46907 * 109.46953 * 300.00028 * 6 4 3 8 8 C 1.46853 * 110.99962 * 294.20792 * 7 6 4 9 9 C 1.53029 * 109.52342 * 174.15820 * 8 7 6 10 10 C 1.53122 * 109.27886 * 59.18552 * 9 8 7 11 11 C 1.53123 * 109.15863 * 302.34824 * 10 9 8 12 12 H 1.09008 * 109.49810 * 297.70616 * 11 10 9 13 13 C 1.50700 * 109.50350 * 177.59310 * 11 10 9 14 14 H 1.07998 * 120.00046 * 240.18811 * 13 11 10 15 15 C 1.37884 * 120.00091 * 60.19495 * 13 11 10 16 16 N 1.31515 * 119.99909 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00074 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47016 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47209 * 209.99897 * 17 15 13 20 20 H 1.48501 * 109.47253 * 330.00030 * 17 15 13 21 21 C 1.46851 * 111.00031 * 170.00495 * 7 6 4 22 22 C 1.52993 * 109.47348 * 262.75047 * 4 3 2 23 23 C 1.53004 * 117.49797 * 9.18198 * 22 4 3 24 24 C 1.53002 * 117.50172 * 300.51956 * 22 4 3 25 25 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46981 * 59.99531 * 1 2 3 27 27 H 1.09006 * 109.47497 * 300.00052 * 1 2 3 28 28 H 1.08997 * 109.47325 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47241 * 240.00086 * 2 1 3 30 30 H 1.08994 * 109.47757 * 59.99702 * 6 4 3 31 31 H 1.08997 * 109.47298 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.46584 * 294.18431 * 8 7 6 33 33 H 1.09007 * 109.45686 * 54.14929 * 8 7 6 34 34 H 1.09004 * 109.50558 * 299.24562 * 9 8 7 35 35 H 1.08996 * 109.50468 * 179.12491 * 9 8 7 36 36 H 1.08994 * 109.52737 * 182.44298 * 10 9 8 37 37 H 1.08996 * 109.57458 * 62.27618 * 10 9 8 38 38 H 0.96997 * 120.00401 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.45702 * 305.85627 * 21 7 6 40 40 H 1.08999 * 109.46098 * 65.83348 * 21 7 6 41 41 H 1.08997 * 115.55439 * 154.84824 * 22 4 3 42 42 H 1.09000 * 117.49981 * 359.97438 * 23 22 4 43 43 H 1.09001 * 117.49981 * 145.02273 * 23 22 4 44 44 H 1.08999 * 117.50162 * 214.97289 * 24 22 4 45 45 H 1.09002 * 117.49951 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4305 1.4601 0.0322 5 1 3.8765 0.5409 -0.3475 6 6 3.8685 2.6379 -0.8406 7 7 3.4261 2.4138 -2.2235 8 6 4.1136 1.2589 -2.8153 9 6 3.5256 0.9670 -4.1976 10 6 3.6971 2.1991 -5.0904 11 6 3.0138 3.3987 -4.4281 12 1 1.9455 3.2028 -4.3343 13 6 3.2284 4.6289 -5.2716 14 1 3.7432 5.4837 -4.8586 15 6 2.7673 4.6632 -6.5706 16 7 2.1407 3.6221 -7.0736 17 14 3.0327 6.1883 -7.6159 18 1 4.3241 6.0736 -8.3399 19 1 1.9249 6.3152 -8.5967 20 1 3.0601 7.3887 -6.7421 21 6 3.6165 3.6201 -3.0390 22 6 3.8912 1.6936 1.4723 23 6 2.8466 1.5476 2.5807 24 6 3.3609 2.9358 2.1911 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.4225 3.5572 -0.4611 31 1 4.9548 2.7239 -0.8165 32 1 5.1767 1.4793 -2.9118 33 1 3.9802 0.3885 -2.1727 34 1 2.4655 0.7329 -4.1002 35 1 4.0465 0.1195 -4.6431 36 1 3.2410 2.0110 -6.0623 37 1 4.7583 2.4108 -5.2208 38 1 1.8160 3.6463 -7.9873 39 1 3.1222 4.4647 -2.5589 40 1 4.6819 3.8293 -3.1348 41 1 4.9104 1.3791 1.6968 42 1 1.8311 1.2855 2.2838 43 1 3.1787 1.1373 3.5344 44 1 4.0310 3.4381 2.8888 45 1 2.6840 3.5869 1.6379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599469925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:28 Heat of formation + Delta-G solvation = -31.020345 kcal Electronic energy + Delta-G solvation = -21629.108596 eV Core-core repulsion = 18646.892868 eV Total energy + Delta-G solvation = -2982.215728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.35076 -37.69313 -35.87665 -33.79016 -31.97769 -30.88871 -29.86077 -28.14007 -24.93273 -24.09973 -22.76549 -22.29923 -21.61653 -21.15475 -19.78273 -18.52464 -16.83620 -16.42249 -16.13397 -15.09189 -14.86692 -14.45652 -14.22392 -14.11152 -13.57330 -13.30805 -12.97719 -12.56392 -12.37707 -12.24626 -12.20501 -11.76422 -11.60789 -11.52556 -11.23197 -11.05462 -10.91130 -10.80408 -10.64389 -10.56637 -10.35499 -10.09658 -9.89426 -9.79387 -9.41449 -9.28706 -8.90757 -8.64576 -8.24996 -7.52957 -5.92543 -3.98362 3.33782 3.40488 3.43799 3.73840 3.86202 4.39793 4.54185 4.79885 4.94078 4.99393 5.16905 5.25813 5.37289 5.39629 5.47976 5.49129 5.55961 5.64460 5.68449 5.74759 5.84178 5.87516 5.95750 6.03414 6.11850 6.14329 6.15910 6.23279 6.28301 6.34365 6.46831 6.58515 6.76068 6.80722 7.04001 7.28128 7.44386 7.51942 7.74882 7.80940 7.92192 8.15687 8.23509 8.54280 9.05864 9.65548 11.13498 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.004573 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.682838 B = 6121.987826 C = 6464.773579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.126 3.874 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.528 5.528 8 C 0.061 3.939 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.056 3.944 12 H 0.035 0.965 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.070 3.930 22 C -0.182 4.182 23 C -0.171 4.171 24 C -0.169 4.169 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.016 0.984 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -7.615 15.845 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.276 6.276 4 C 0.067 3.933 5 H 0.080 0.920 6 C -0.068 4.068 7 N -0.252 5.252 8 C -0.067 4.067 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.053 0.947 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.057 4.057 22 C -0.201 4.201 23 C -0.208 4.208 24 C -0.206 4.206 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.226 -7.608 15.673 17.465 hybrid contribution 1.337 0.718 -0.579 1.624 sum 2.563 -6.891 15.094 16.789 Atomic orbital electron populations 1.21708 0.94098 1.01678 1.03164 1.22430 0.95373 0.84626 0.99309 1.87981 1.19892 1.25306 1.94432 1.21546 0.82051 0.98451 0.91263 0.91985 1.22146 0.96993 0.97946 0.89760 1.61930 1.57068 1.05789 1.00450 1.22067 0.94981 0.93068 0.96539 1.21653 1.00431 0.99062 0.94211 1.21642 0.98827 0.93652 1.00655 1.18651 0.96054 0.93545 0.88074 0.94728 1.21163 1.36743 1.00095 0.97213 0.92906 1.24929 0.95066 0.95997 0.97833 1.69895 1.38569 1.29067 1.15234 0.86641 0.77646 0.83687 0.80274 1.20842 1.21270 1.19980 1.22291 0.97708 0.89651 0.96061 1.22897 0.98721 1.04442 0.94027 1.22903 0.99695 1.00476 0.97760 1.22866 1.03647 0.90966 1.03073 0.91692 0.91370 0.92368 0.94267 0.93543 0.90370 0.94588 0.96160 0.92900 0.92120 0.93770 0.89197 0.95280 0.93126 0.92318 0.96568 0.87786 0.87940 0.89585 0.89356 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.15 0.38 -1.29 16 2 C 0.06 0.74 5.76 37.15 0.21 0.95 16 3 O -0.36 -5.32 8.48 -35.23 -0.30 -5.62 16 4 C 0.13 1.71 2.45 -26.73 -0.07 1.65 16 5 H 0.06 0.83 6.01 -51.93 -0.31 0.52 16 6 C 0.06 0.95 4.50 -3.82 -0.02 0.93 16 7 N -0.53 -10.08 4.52 -234.67 -1.06 -11.14 16 8 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16 9 C -0.12 -2.31 6.09 -26.65 -0.16 -2.48 16 10 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 11 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 12 H 0.03 0.99 8.14 -51.92 -0.42 0.57 16 13 C -0.51 -14.31 8.56 -34.44 -0.29 -14.60 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -25.68 11.36 55.43 0.63 -25.05 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.07 1.53 4.68 -3.84 -0.02 1.51 16 22 C -0.18 -2.07 5.84 -90.62 -0.53 -2.60 16 23 C -0.17 -1.81 9.59 -26.69 -0.26 -2.06 16 24 C -0.17 -1.86 9.68 -26.69 -0.26 -2.12 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.42 7.71 -51.93 -0.40 0.02 16 29 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.08 1.27 7.16 -51.93 -0.37 0.89 16 31 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.84 6.21 -51.93 -0.32 0.52 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 1.29 8.02 -51.93 -0.42 0.87 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.17 6.38 -51.93 -0.33 0.84 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 1.23 7.64 -51.93 -0.40 0.84 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -28.83 345.84 -10.33 -39.16 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.33 Total: -0.12 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.46 Total: -18.93 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.43 Total: -36.19 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.30 Total: -5.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.83 -10.33 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds