Wall clock time and date at job start Mon Mar 30 2020 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47603 * 2 1 4 4 C 1.42899 * 114.00192 * 178.58713 * 3 2 1 5 5 H 1.08994 * 109.46940 * 22.75332 * 4 3 2 6 6 C 1.52999 * 109.46750 * 142.75491 * 4 3 2 7 7 N 1.46907 * 109.46953 * 300.00028 * 6 4 3 8 8 C 1.46853 * 110.99962 * 294.20792 * 7 6 4 9 9 C 1.53029 * 109.52342 * 174.15820 * 8 7 6 10 10 C 1.53122 * 109.27886 * 59.18552 * 9 8 7 11 11 C 1.53123 * 109.15863 * 302.34824 * 10 9 8 12 12 H 1.09008 * 109.49810 * 297.70616 * 11 10 9 13 13 C 1.50700 * 109.50350 * 177.59310 * 11 10 9 14 14 H 1.07998 * 120.00046 * 240.18811 * 13 11 10 15 15 C 1.37884 * 120.00091 * 60.19495 * 13 11 10 16 16 N 1.31515 * 119.99909 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00074 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47016 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47209 * 209.99897 * 17 15 13 20 20 H 1.48501 * 109.47253 * 330.00030 * 17 15 13 21 21 C 1.46851 * 111.00031 * 170.00495 * 7 6 4 22 22 C 1.52993 * 109.47348 * 262.75047 * 4 3 2 23 23 C 1.53004 * 117.49797 * 9.18198 * 22 4 3 24 24 C 1.53002 * 117.50172 * 300.51956 * 22 4 3 25 25 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46981 * 59.99531 * 1 2 3 27 27 H 1.09006 * 109.47497 * 300.00052 * 1 2 3 28 28 H 1.08997 * 109.47325 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47241 * 240.00086 * 2 1 3 30 30 H 1.08994 * 109.47757 * 59.99702 * 6 4 3 31 31 H 1.08997 * 109.47298 * 180.02562 * 6 4 3 32 32 H 1.08998 * 109.46584 * 294.18431 * 8 7 6 33 33 H 1.09007 * 109.45686 * 54.14929 * 8 7 6 34 34 H 1.09004 * 109.50558 * 299.24562 * 9 8 7 35 35 H 1.08996 * 109.50468 * 179.12491 * 9 8 7 36 36 H 1.08994 * 109.52737 * 182.44298 * 10 9 8 37 37 H 1.08996 * 109.57458 * 62.27618 * 10 9 8 38 38 H 0.96997 * 120.00401 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.45702 * 305.85627 * 21 7 6 40 40 H 1.08999 * 109.46098 * 65.83348 * 21 7 6 41 41 H 1.08997 * 115.55439 * 154.84824 * 22 4 3 42 42 H 1.09000 * 117.49981 * 359.97438 * 23 22 4 43 43 H 1.09001 * 117.49981 * 145.02273 * 23 22 4 44 44 H 1.08999 * 117.50162 * 214.97289 * 24 22 4 45 45 H 1.09002 * 117.49951 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4305 1.4601 0.0322 5 1 3.8765 0.5409 -0.3475 6 6 3.8685 2.6379 -0.8406 7 7 3.4261 2.4138 -2.2235 8 6 4.1136 1.2589 -2.8153 9 6 3.5256 0.9670 -4.1976 10 6 3.6971 2.1991 -5.0904 11 6 3.0138 3.3987 -4.4281 12 1 1.9455 3.2028 -4.3343 13 6 3.2284 4.6289 -5.2716 14 1 3.7432 5.4837 -4.8586 15 6 2.7673 4.6632 -6.5706 16 7 2.1407 3.6221 -7.0736 17 14 3.0327 6.1883 -7.6159 18 1 4.3241 6.0736 -8.3399 19 1 1.9249 6.3152 -8.5967 20 1 3.0601 7.3887 -6.7421 21 6 3.6165 3.6201 -3.0390 22 6 3.8912 1.6936 1.4723 23 6 2.8466 1.5476 2.5807 24 6 3.3609 2.9358 2.1911 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.4225 3.5572 -0.4611 31 1 4.9548 2.7239 -0.8165 32 1 5.1767 1.4793 -2.9118 33 1 3.9802 0.3885 -2.1727 34 1 2.4655 0.7329 -4.1002 35 1 4.0465 0.1195 -4.6431 36 1 3.2410 2.0110 -6.0623 37 1 4.7583 2.4108 -5.2208 38 1 1.8160 3.6463 -7.9873 39 1 3.1222 4.4647 -2.5589 40 1 4.6819 3.8293 -3.1348 41 1 4.9104 1.3791 1.6968 42 1 1.8311 1.2855 2.2838 43 1 3.1787 1.1373 3.5344 44 1 4.0310 3.4381 2.8888 45 1 2.6840 3.5869 1.6379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599469925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:27 Heat of formation + Delta-G solvation = -47.043895 kcal Electronic energy + Delta-G solvation = -21629.803429 eV Core-core repulsion = 18646.892868 eV Total energy + Delta-G solvation = -2982.910562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53006 -39.18141 -36.80562 -35.62013 -33.68721 -32.03612 -31.67189 -29.43146 -26.92612 -25.48003 -23.79619 -23.38192 -23.12888 -22.55696 -20.84193 -20.33746 -18.43283 -17.82114 -17.29991 -16.77935 -16.18974 -15.79937 -15.61682 -15.42325 -14.92474 -14.81761 -14.56758 -14.17224 -13.89544 -13.62533 -13.34819 -13.16300 -12.84692 -12.78988 -12.74578 -12.55519 -12.43215 -12.13832 -12.12342 -11.87026 -11.75204 -11.68302 -11.40074 -11.19656 -11.04588 -10.67443 -10.64535 -10.36064 -10.27237 -9.05172 -8.07366 -6.21744 1.41122 1.41755 1.52267 2.43030 2.81809 2.87146 3.14656 3.19396 3.82939 4.00144 4.04840 4.18031 4.21605 4.25589 4.31805 4.39564 4.45836 4.51685 4.53623 4.59031 4.61384 4.64188 4.73970 4.84781 4.88613 4.94426 4.97250 5.01820 5.06793 5.10343 5.12876 5.19413 5.28451 5.34145 5.39686 5.40737 5.52455 5.63639 5.97250 6.13951 6.22015 6.36356 6.47066 6.54938 6.90877 7.46025 8.97406 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.004573 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.682838 B = 6121.987826 C = 6464.773579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.128 3.872 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.540 5.540 8 C 0.066 3.934 9 C -0.109 4.109 10 C -0.102 4.102 11 C 0.054 3.946 12 H -0.008 1.008 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.084 3.916 22 C -0.183 4.183 23 C -0.162 4.162 24 C -0.174 4.174 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.050 0.950 40 H 0.015 0.985 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -8.371 17.480 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.301 6.301 4 C 0.070 3.930 5 H 0.087 0.913 6 C -0.067 4.067 7 N -0.265 5.265 8 C -0.061 4.061 9 C -0.146 4.146 10 C -0.140 4.140 11 C 0.036 3.964 12 H 0.011 0.989 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.043 4.043 22 C -0.201 4.201 23 C -0.199 4.199 24 C -0.211 4.211 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.438 -8.371 17.326 19.396 hybrid contribution 0.909 0.941 -1.080 1.696 sum 3.347 -7.430 16.246 18.175 Atomic orbital electron populations 1.21714 0.93618 1.02902 1.02137 1.22564 0.95836 0.83671 0.99945 1.87962 1.20630 1.26906 1.94646 1.21515 0.81699 0.97459 0.92343 0.91276 1.22217 0.97685 0.98914 0.87887 1.61853 1.58116 1.04794 1.01719 1.22053 0.94858 0.93623 0.95589 1.21557 1.00219 0.97838 0.95016 1.21441 0.97630 0.95083 0.99881 1.18561 0.93876 0.93650 0.90355 0.98950 1.21526 1.37039 1.00946 0.98054 0.93139 1.25725 0.94717 0.98963 0.99036 1.70042 1.39112 1.30836 1.15522 0.85607 0.77764 0.80067 0.78514 1.20013 1.20849 1.19365 1.21942 0.96949 0.90943 0.94497 1.22868 0.99812 1.04788 0.92671 1.22936 0.98941 0.99753 0.98222 1.22871 1.03800 0.91070 1.03363 0.89368 0.93781 0.91948 0.92145 0.94193 0.91324 0.93297 0.95485 0.89920 0.93482 0.91183 0.92450 0.95807 0.93074 0.93143 0.96650 0.85877 0.88994 0.87454 0.87684 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.06 1.30 5.76 71.98 0.41 1.71 16 3 O -0.38 -10.95 8.48 -148.98 -1.26 -12.21 16 4 C 0.13 3.23 2.45 30.59 0.07 3.31 16 5 H 0.07 1.64 6.01 -2.39 -0.01 1.62 16 6 C 0.06 1.85 4.50 86.30 0.39 2.23 16 7 N -0.54 -20.39 4.52 -896.36 -4.06 -24.44 16 8 C 0.07 2.28 5.29 86.32 0.46 2.74 16 9 C -0.11 -4.29 6.09 30.64 0.19 -4.11 16 10 C -0.10 -5.05 5.03 30.68 0.15 -4.89 16 11 C 0.05 2.89 2.26 -11.49 -0.03 2.86 16 12 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 13 C -0.54 -30.77 8.56 25.60 0.22 -30.55 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -54.43 11.36 21.45 0.24 -54.19 16 17 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.08 3.76 4.68 86.32 0.40 4.17 16 22 C -0.18 -3.65 5.84 -10.79 -0.06 -3.71 16 23 C -0.16 -2.97 9.59 30.62 0.29 -2.68 16 24 C -0.17 -3.51 9.68 30.62 0.30 -3.22 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.14 7.71 -2.39 -0.02 1.12 16 29 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.07 2.20 7.16 -2.39 -0.02 2.19 16 31 H 0.05 1.37 8.12 -2.39 -0.02 1.35 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 2.38 6.21 -2.38 -0.01 2.37 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 3.20 6.16 -2.39 -0.01 3.18 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.05 2.28 8.02 -2.39 -0.02 2.26 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.09 1.91 6.38 -2.39 -0.02 1.90 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 1.92 7.64 -2.39 -0.02 1.91 16 Total: -1.00 -63.70 345.84 1.86 -61.84 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.92 Total: 15.61 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.99 Total: -33.27 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.81 Total: -78.63 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.26 Total: -12.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.70 1.86 -61.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.795 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds