Wall clock time and date at job start Mon Mar 30 2020 07:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47026 * 2 1 4 4 C 1.42898 * 114.00387 * 184.82498 * 3 2 1 5 5 H 1.09004 * 109.47082 * 332.06853 * 4 3 2 6 6 C 1.53004 * 109.47185 * 212.06737 * 4 3 2 7 7 N 1.46903 * 109.47043 * 60.64827 * 6 4 3 8 8 C 1.46848 * 110.99629 * 196.33175 * 7 6 4 9 9 C 1.53039 * 109.52043 * 174.16182 * 8 7 6 10 10 C 1.53113 * 109.28057 * 59.17711 * 9 8 7 11 11 C 1.53123 * 109.16249 * 302.34638 * 10 9 8 12 12 H 1.09005 * 109.49973 * 297.67790 * 11 10 9 13 13 C 1.50698 * 109.50610 * 177.59843 * 11 10 9 14 14 H 1.07995 * 119.99977 * 335.11977 * 13 11 10 15 15 C 1.37875 * 120.00158 * 155.12328 * 13 11 10 16 16 N 1.31519 * 119.99903 * 355.85808 * 15 13 11 17 17 Si 1.86798 * 120.00204 * 175.85530 * 15 13 11 18 18 H 1.48493 * 109.47231 * 89.99776 * 17 15 13 19 19 H 1.48502 * 109.47049 * 330.00158 * 17 15 13 20 20 H 1.48498 * 109.47455 * 210.00316 * 17 15 13 21 21 C 1.46849 * 111.00067 * 72.11834 * 7 6 4 22 22 C 1.53000 * 109.46977 * 92.06931 * 4 3 2 23 23 C 1.53001 * 117.49575 * 254.34332 * 22 4 3 24 24 C 1.53008 * 117.49588 * 185.68822 * 22 4 3 25 25 H 1.09002 * 109.47595 * 60.00014 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47552 * 299.99500 * 1 2 3 28 28 H 1.09000 * 109.47552 * 240.00500 * 2 1 3 29 29 H 1.09002 * 109.47595 * 119.99986 * 2 1 3 30 30 H 1.08993 * 109.47267 * 300.64255 * 6 4 3 31 31 H 1.09004 * 109.46792 * 180.64669 * 6 4 3 32 32 H 1.08995 * 109.46463 * 54.14479 * 8 7 6 33 33 H 1.09003 * 109.44975 * 294.16560 * 8 7 6 34 34 H 1.09005 * 109.50115 * 299.23516 * 9 8 7 35 35 H 1.08998 * 109.49936 * 179.11985 * 9 8 7 36 36 H 1.08997 * 109.52366 * 182.44472 * 10 9 8 37 37 H 1.08996 * 109.57679 * 62.28197 * 10 9 8 38 38 H 0.96996 * 119.99958 * 5.77663 * 16 15 13 39 39 H 1.09006 * 109.45961 * 65.82375 * 21 7 6 40 40 H 1.08994 * 109.46362 * 305.85917 * 21 7 6 41 41 H 1.08998 * 115.55133 * 40.01307 * 22 4 3 42 42 H 1.09002 * 117.50403 * 0.02562 * 23 22 4 43 43 H 1.09006 * 117.49876 * 145.02024 * 23 22 4 44 44 H 1.09006 * 117.49272 * 214.97466 * 24 22 4 45 45 H 1.08996 * 117.50230 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4264 1.4617 -0.1098 5 1 3.8962 0.5727 0.3109 6 6 3.8990 2.6992 0.6560 7 7 3.5397 2.5643 2.0740 8 6 3.6179 3.8593 2.7621 9 6 3.0993 3.7095 4.1941 10 6 3.9442 2.6669 4.9313 11 6 3.8848 1.3409 4.1679 12 1 2.8567 0.9792 4.1463 13 6 4.7612 0.3253 4.8546 14 1 5.5899 0.6519 5.4652 15 6 4.5051 -1.0210 4.7032 16 7 3.4489 -1.4175 4.0271 17 14 5.6581 -2.2818 5.4583 18 1 5.2058 -2.6041 6.8355 19 1 7.0348 -1.7272 5.5066 20 1 5.6505 -3.5164 4.6332 21 6 4.3806 1.5592 2.7367 22 6 3.8148 1.5949 -1.5837 23 6 4.4451 0.3763 -2.2609 24 6 5.3066 1.5958 -1.9237 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4205 3.5869 0.2427 31 1 4.9810 2.7929 0.5626 32 1 3.0094 4.5905 2.2301 33 1 4.6542 4.1964 2.7845 34 1 2.0588 3.3854 4.1723 35 1 3.1720 4.6673 4.7094 36 1 3.5513 2.5254 5.9381 37 1 4.9777 3.0084 4.9883 38 1 2.8971 -0.7676 3.5647 39 1 5.4133 1.9074 2.7592 40 1 4.3261 0.6201 2.1862 41 1 3.1606 2.2239 -2.1873 42 1 4.5826 -0.5204 -1.6567 43 1 4.2058 0.2039 -3.3103 44 1 5.6337 2.2252 -2.7514 45 1 6.0113 1.5020 -1.0975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599469926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:31 Heat of formation + Delta-G solvation = -39.709868 kcal Electronic energy + Delta-G solvation = -21975.395950 eV Core-core repulsion = 18992.803416 eV Total energy + Delta-G solvation = -2982.592534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.09607 -37.69723 -36.13268 -33.83656 -32.39977 -30.82010 -29.44040 -28.01357 -24.53768 -24.04246 -22.51100 -22.31063 -21.78716 -21.23139 -19.91001 -18.88835 -16.81280 -16.76822 -15.66987 -14.95549 -14.77279 -14.26654 -14.17783 -13.84276 -13.71396 -13.54131 -13.28279 -12.72070 -12.35084 -12.33183 -11.99772 -11.71390 -11.54395 -11.41930 -11.29823 -11.08297 -10.89953 -10.79648 -10.60457 -10.42682 -10.25244 -10.17150 -10.09054 -9.97836 -9.50021 -9.06579 -9.01800 -8.46600 -8.24429 -7.54464 -6.30586 -4.02642 3.43307 3.46229 3.61885 3.74242 4.04525 4.44026 4.56110 4.89068 4.98364 5.05447 5.35690 5.39264 5.44504 5.49096 5.58997 5.61642 5.62835 5.71584 5.75100 5.81125 5.83158 5.86675 5.94861 6.05746 6.10230 6.12163 6.20775 6.25243 6.34489 6.36245 6.44145 6.45492 6.56351 6.62486 6.83063 6.89846 6.98139 7.50569 7.62867 7.70335 7.83561 7.88822 8.35860 8.49946 8.94334 9.70366 11.07644 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.006819 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.335732 B = 4105.349166 C = 4678.618619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.129 3.871 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.532 5.532 8 C 0.066 3.934 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.037 3.963 12 H 0.039 0.961 13 C -0.594 4.594 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.911 5.911 17 Si 1.065 2.935 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.069 3.931 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.175 4.175 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.274 0.726 39 H 0.013 0.987 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 6.156 -10.428 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.070 3.930 5 H 0.082 0.918 6 C -0.065 4.065 7 N -0.257 5.257 8 C -0.063 4.063 9 C -0.154 4.154 10 C -0.142 4.142 11 C 0.018 3.982 12 H 0.057 0.943 13 C -0.633 4.633 14 H 0.065 0.935 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.894 3.106 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.059 4.059 22 C -0.191 4.191 23 C -0.218 4.218 24 C -0.212 4.212 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.869 4.527 -10.138 11.137 hybrid contribution 0.936 1.671 -0.424 1.962 sum 0.067 6.198 -10.562 12.246 Atomic orbital electron populations 1.21678 0.94355 1.01707 1.02499 1.22447 0.95070 0.84315 1.00056 1.87900 1.20139 1.25836 1.94191 1.21547 0.82541 0.98577 0.90346 0.91826 1.22048 0.97365 0.97342 0.89736 1.61982 1.55674 1.07701 1.00318 1.21947 0.98043 0.90901 0.95364 1.21625 1.00752 0.98575 0.94455 1.21591 0.97640 0.96298 0.98709 1.18851 0.97867 0.92093 0.89434 0.94260 1.21974 1.15955 0.92706 1.32687 0.93532 1.25758 0.97913 0.98068 0.96588 1.70725 1.13874 1.38797 1.31354 0.83604 0.75085 0.75665 0.76221 1.21470 1.21608 1.21111 1.22530 0.92378 0.92879 0.98064 1.22901 0.96016 1.02178 0.98007 1.23018 1.04645 0.92896 1.01192 1.22897 0.93371 1.01592 1.03357 0.92699 0.91599 0.91757 0.94360 0.92520 0.91118 0.94350 0.92148 0.96143 0.91770 0.93158 0.93130 0.94011 0.91458 0.96879 0.92081 0.87415 0.88740 0.88945 0.88824 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 37.15 0.38 -1.68 16 2 C 0.06 0.96 6.45 37.15 0.24 1.20 16 3 O -0.36 -6.50 9.86 -35.23 -0.35 -6.85 16 4 C 0.13 2.15 2.31 -26.73 -0.06 2.09 16 5 H 0.06 1.20 6.11 -51.93 -0.32 0.88 16 6 C 0.06 1.08 4.57 -3.82 -0.02 1.06 16 7 N -0.53 -10.54 4.49 -234.67 -1.05 -11.59 16 8 C 0.07 1.17 5.44 -3.83 -0.02 1.15 16 9 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 10 C -0.10 -2.27 5.26 -26.61 -0.14 -2.41 16 11 C 0.04 0.92 1.97 -91.69 -0.18 0.74 16 12 H 0.04 1.10 6.70 -51.93 -0.35 0.75 16 13 C -0.59 -16.56 8.32 -34.44 -0.29 -16.84 16 14 H 0.05 1.31 7.81 -52.49 -0.41 0.90 16 15 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 16 N -0.91 -26.97 13.62 55.43 0.75 -26.21 16 17 Si 1.07 25.10 29.91 -169.99 -5.08 20.01 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.07 1.57 4.57 -3.83 -0.02 1.55 16 22 C -0.17 -2.33 5.42 -90.62 -0.49 -2.82 16 23 C -0.18 -2.21 10.18 -26.69 -0.27 -2.48 16 24 C -0.18 -2.10 9.82 -26.69 -0.26 -2.36 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 31 H 0.04 0.63 7.58 -51.93 -0.39 0.24 16 32 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.27 8.15 6.68 -40.82 -0.27 7.87 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 1.52 6.50 -51.93 -0.34 1.18 16 41 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.20 7.97 -51.93 -0.41 0.79 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -29.34 352.56 -10.25 -39.60 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.45 Total: 2.33 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.39 Total: -22.60 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.30 Total: -37.80 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.35 Total: -6.85 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.34 -10.25 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds