Wall clock time and date at job start Mon Mar 30 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47026 * 2 1 4 4 C 1.42898 * 114.00387 * 184.82498 * 3 2 1 5 5 H 1.09004 * 109.47082 * 332.06853 * 4 3 2 6 6 C 1.53004 * 109.47185 * 212.06737 * 4 3 2 7 7 N 1.46903 * 109.47043 * 60.64827 * 6 4 3 8 8 C 1.46848 * 110.99629 * 196.33175 * 7 6 4 9 9 C 1.53039 * 109.52043 * 174.16182 * 8 7 6 10 10 C 1.53113 * 109.28057 * 59.17711 * 9 8 7 11 11 C 1.53123 * 109.16249 * 302.34638 * 10 9 8 12 12 H 1.09005 * 109.49973 * 297.67790 * 11 10 9 13 13 C 1.50698 * 109.50610 * 177.59843 * 11 10 9 14 14 H 1.07995 * 119.99977 * 335.11977 * 13 11 10 15 15 C 1.37875 * 120.00158 * 155.12328 * 13 11 10 16 16 N 1.31519 * 119.99903 * 355.85808 * 15 13 11 17 17 Si 1.86798 * 120.00204 * 175.85530 * 15 13 11 18 18 H 1.48493 * 109.47231 * 89.99776 * 17 15 13 19 19 H 1.48502 * 109.47049 * 330.00158 * 17 15 13 20 20 H 1.48498 * 109.47455 * 210.00316 * 17 15 13 21 21 C 1.46849 * 111.00067 * 72.11834 * 7 6 4 22 22 C 1.53000 * 109.46977 * 92.06931 * 4 3 2 23 23 C 1.53001 * 117.49575 * 254.34332 * 22 4 3 24 24 C 1.53008 * 117.49588 * 185.68822 * 22 4 3 25 25 H 1.09002 * 109.47595 * 60.00014 * 1 2 3 26 26 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47552 * 299.99500 * 1 2 3 28 28 H 1.09000 * 109.47552 * 240.00500 * 2 1 3 29 29 H 1.09002 * 109.47595 * 119.99986 * 2 1 3 30 30 H 1.08993 * 109.47267 * 300.64255 * 6 4 3 31 31 H 1.09004 * 109.46792 * 180.64669 * 6 4 3 32 32 H 1.08995 * 109.46463 * 54.14479 * 8 7 6 33 33 H 1.09003 * 109.44975 * 294.16560 * 8 7 6 34 34 H 1.09005 * 109.50115 * 299.23516 * 9 8 7 35 35 H 1.08998 * 109.49936 * 179.11985 * 9 8 7 36 36 H 1.08997 * 109.52366 * 182.44472 * 10 9 8 37 37 H 1.08996 * 109.57679 * 62.28197 * 10 9 8 38 38 H 0.96996 * 119.99958 * 5.77663 * 16 15 13 39 39 H 1.09006 * 109.45961 * 65.82375 * 21 7 6 40 40 H 1.08994 * 109.46362 * 305.85917 * 21 7 6 41 41 H 1.08998 * 115.55133 * 40.01307 * 22 4 3 42 42 H 1.09002 * 117.50403 * 0.02562 * 23 22 4 43 43 H 1.09006 * 117.49876 * 145.02024 * 23 22 4 44 44 H 1.09006 * 117.49272 * 214.97466 * 24 22 4 45 45 H 1.08996 * 117.50230 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4264 1.4617 -0.1098 5 1 3.8962 0.5727 0.3109 6 6 3.8990 2.6992 0.6560 7 7 3.5397 2.5643 2.0740 8 6 3.6179 3.8593 2.7621 9 6 3.0993 3.7095 4.1941 10 6 3.9442 2.6669 4.9313 11 6 3.8848 1.3409 4.1679 12 1 2.8567 0.9792 4.1463 13 6 4.7612 0.3253 4.8546 14 1 5.5899 0.6519 5.4652 15 6 4.5051 -1.0210 4.7032 16 7 3.4489 -1.4175 4.0271 17 14 5.6581 -2.2818 5.4583 18 1 5.2058 -2.6041 6.8355 19 1 7.0348 -1.7272 5.5066 20 1 5.6505 -3.5164 4.6332 21 6 4.3806 1.5592 2.7367 22 6 3.8148 1.5949 -1.5837 23 6 4.4451 0.3763 -2.2609 24 6 5.3066 1.5958 -1.9237 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4205 3.5869 0.2427 31 1 4.9810 2.7929 0.5626 32 1 3.0094 4.5905 2.2301 33 1 4.6542 4.1964 2.7845 34 1 2.0588 3.3854 4.1723 35 1 3.1720 4.6673 4.7094 36 1 3.5513 2.5254 5.9381 37 1 4.9777 3.0084 4.9883 38 1 2.8971 -0.7676 3.5647 39 1 5.4133 1.9074 2.7592 40 1 4.3261 0.6201 2.1862 41 1 3.1606 2.2239 -2.1873 42 1 4.5826 -0.5204 -1.6567 43 1 4.2058 0.2039 -3.3103 44 1 5.6337 2.2252 -2.7514 45 1 6.0113 1.5020 -1.0975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599469926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:30 Heat of formation + Delta-G solvation = -56.420329 kcal Electronic energy + Delta-G solvation = -21976.120570 eV Core-core repulsion = 18992.803416 eV Total energy + Delta-G solvation = -2983.317154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51808 -39.21104 -37.30971 -35.72723 -34.11482 -32.15698 -31.29920 -29.41849 -26.60333 -25.52061 -23.74002 -23.55491 -23.36749 -22.74340 -21.16452 -20.63317 -18.84535 -18.08490 -17.06768 -16.47039 -15.99850 -15.78416 -15.67327 -15.57481 -15.49773 -15.02115 -14.90777 -14.25576 -13.85836 -13.69077 -13.34529 -13.23752 -13.13193 -12.91171 -12.72692 -12.51992 -12.41373 -12.20277 -12.12657 -11.97978 -11.88989 -11.77861 -11.46390 -11.36199 -11.14968 -10.83329 -10.54748 -10.36985 -10.35447 -9.12921 -8.58033 -6.30769 1.49894 1.58464 1.75749 2.55005 2.62817 2.80217 3.02302 3.25199 3.79062 3.86202 3.98292 4.05932 4.06858 4.11061 4.17250 4.20338 4.29961 4.40117 4.44237 4.48494 4.49963 4.56032 4.69254 4.69793 4.76097 4.81468 4.87366 4.89863 4.93895 4.95438 5.04796 5.06773 5.15487 5.17738 5.18312 5.21091 5.25862 5.56615 5.71837 5.97683 6.25231 6.26696 6.32482 6.40732 6.69371 7.50439 8.79271 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.006819 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.335732 B = 4105.349166 C = 4678.618619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 O -0.376 6.376 4 C 0.129 3.871 5 H 0.029 0.971 6 C 0.065 3.935 7 N -0.547 5.547 8 C 0.063 3.937 9 C -0.109 4.109 10 C -0.101 4.101 11 C 0.032 3.968 12 H 0.001 0.999 13 C -0.609 4.609 14 H 0.042 0.958 15 C -0.029 4.029 16 N -0.933 5.933 17 Si 1.111 2.889 18 H -0.274 1.274 19 H -0.272 1.272 20 H -0.284 1.284 21 C 0.093 3.907 22 C -0.178 4.178 23 C -0.179 4.179 24 C -0.163 4.163 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.014 0.986 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.259 0.741 39 H 0.006 0.994 40 H 0.029 0.971 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 7.679 -11.724 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 O -0.295 6.295 4 C 0.070 3.930 5 H 0.047 0.953 6 C -0.063 4.063 7 N -0.271 5.271 8 C -0.064 4.064 9 C -0.147 4.147 10 C -0.139 4.139 11 C 0.013 3.987 12 H 0.019 0.981 13 C -0.647 4.647 14 H 0.060 0.940 15 C -0.227 4.227 16 N -0.570 5.570 17 Si 0.933 3.067 18 H -0.200 1.200 19 H -0.198 1.198 20 H -0.209 1.209 21 C -0.035 4.035 22 C -0.197 4.197 23 C -0.216 4.216 24 C -0.200 4.200 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.048 0.952 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.318 6.080 -11.433 12.953 hybrid contribution 0.750 1.229 -0.007 1.440 sum 0.433 7.309 -11.441 13.583 Atomic orbital electron populations 1.21665 0.92268 1.02952 1.02683 1.22447 0.96726 0.83747 0.98756 1.87857 1.20846 1.26360 1.94413 1.21549 0.81801 0.97066 0.92562 0.95306 1.22136 0.98062 0.98226 0.87866 1.61903 1.55018 1.08302 1.01882 1.22071 0.99156 0.90196 0.94978 1.21581 0.99166 0.98963 0.94971 1.21499 0.98568 0.95539 0.98270 1.18813 0.95101 0.93469 0.91322 0.98099 1.22327 1.16011 0.93757 1.32623 0.93992 1.27173 0.98477 1.00601 0.96497 1.70843 1.15007 1.38360 1.32763 0.83019 0.74064 0.73545 0.76045 1.19987 1.19750 1.20944 1.21999 0.92226 0.92774 0.96543 1.22740 0.97469 1.03693 0.95790 1.23078 1.04333 0.92123 1.02040 1.22977 0.91942 1.01446 1.03630 0.90695 0.89896 0.93231 0.92766 0.96721 0.89020 0.93581 0.89214 0.95241 0.92912 0.89493 0.93902 0.93713 0.93050 0.97558 0.95234 0.86083 0.90425 0.86561 0.86088 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 10.28 71.98 0.74 -3.17 16 2 C 0.06 2.06 6.45 71.98 0.46 2.53 16 3 O -0.38 -13.67 9.86 -148.98 -1.47 -15.14 16 4 C 0.13 4.35 2.31 30.60 0.07 4.42 16 5 H 0.03 1.17 6.11 -2.39 -0.01 1.15 16 6 C 0.06 2.15 4.57 86.30 0.39 2.55 16 7 N -0.55 -21.66 4.49 -896.35 -4.02 -25.68 16 8 C 0.06 2.13 5.44 86.33 0.47 2.60 16 9 C -0.11 -3.85 6.09 30.65 0.19 -3.66 16 10 C -0.10 -4.40 5.26 30.67 0.16 -4.24 16 11 C 0.03 1.68 1.97 -11.49 -0.02 1.66 16 12 H 0.00 0.05 6.70 -2.38 -0.02 0.03 16 13 C -0.61 -35.00 8.32 25.60 0.21 -34.79 16 14 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 15 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 16 N -0.93 -57.83 13.62 21.45 0.29 -57.54 16 17 Si 1.11 51.17 29.91 68.60 2.05 53.23 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 C 0.09 4.41 4.57 86.32 0.39 4.80 16 22 C -0.18 -4.57 5.42 -10.79 -0.06 -4.63 16 23 C -0.18 -4.14 10.18 30.62 0.31 -3.83 16 24 C -0.16 -3.58 9.82 30.62 0.30 -3.28 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 2.67 7.86 -2.39 -0.02 2.65 16 31 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 32 H 0.09 2.54 7.95 -2.39 -0.02 2.52 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.26 16.51 6.68 -92.71 -0.62 15.90 16 39 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.03 1.56 6.50 -2.39 -0.02 1.55 16 41 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 43 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.08 2.03 7.97 -2.39 -0.02 2.01 16 Total: -1.00 -66.33 352.56 2.01 -64.32 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.07 Total: 21.06 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 4.09 Total: -40.25 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -3.73 Total: -83.22 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.47 Total: -15.14 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.23 kcal Total: -66.33 2.01 -64.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599469926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.900 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds