Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46905 * 109.46756 * 2 1 4 4 C 1.44322 * 111.00021 * 293.95814 * 3 2 1 5 5 C 1.54071 * 108.38984 * 221.36690 * 4 3 2 6 6 C 1.45846 * 112.56672 * 278.85765 * 5 4 3 7 7 C 1.54447 * 111.73542 * 61.47531 * 6 5 4 8 8 C 1.53093 * 108.64014 * 161.78082 * 7 6 5 9 9 C 1.53172 * 109.16600 * 299.25818 * 8 7 6 10 10 C 1.53190 * 109.04421 * 302.98527 * 9 8 7 11 11 C 1.53087 * 109.14159 * 57.01855 * 10 9 8 12 12 H 1.09001 * 109.48567 * 62.32311 * 11 10 9 13 13 C 1.50703 * 109.48560 * 182.37853 * 11 10 9 14 14 H 1.08001 * 119.99586 * 95.06478 * 13 11 10 15 15 C 1.37875 * 119.99691 * 275.06832 * 13 11 10 16 16 N 1.31514 * 119.99583 * 186.16640 * 15 13 11 17 17 Si 1.86796 * 120.00221 * 6.16557 * 15 13 11 18 18 H 1.48501 * 109.47120 * 84.82721 * 17 15 13 19 19 H 1.48502 * 109.46995 * 204.82331 * 17 15 13 20 20 H 1.48499 * 109.47217 * 324.82683 * 17 15 13 21 21 O 1.42884 * 109.38231 * 302.34984 * 11 10 9 22 22 C 1.50558 * 108.83554 * 282.47130 * 7 6 5 23 23 C 1.47966 * 110.99661 * 61.48805 * 3 2 1 24 24 H 1.08993 * 109.47456 * 60.00298 * 1 2 3 25 25 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46644 * 299.99343 * 1 2 3 27 27 H 1.08999 * 109.46644 * 240.00657 * 2 1 3 28 28 H 1.08993 * 109.47091 * 120.00387 * 2 1 3 29 29 H 1.08993 * 109.67995 * 101.64154 * 4 3 2 30 30 H 1.09003 * 109.70754 * 341.10639 * 4 3 2 31 31 H 1.09002 * 108.85945 * 158.05793 * 5 4 3 32 32 H 1.08997 * 108.85977 * 39.65026 * 5 4 3 33 33 H 1.09007 * 109.02233 * 300.89297 * 6 5 4 34 34 H 1.08993 * 108.96628 * 182.02297 * 6 5 4 35 35 H 1.08992 * 109.52417 * 179.35021 * 8 7 6 36 36 H 1.09002 * 109.52056 * 59.16552 * 8 7 6 37 37 H 1.09005 * 109.53935 * 62.85131 * 9 8 7 38 38 H 1.09000 * 109.54067 * 183.02437 * 9 8 7 39 39 H 1.09000 * 109.51943 * 176.91682 * 10 9 8 40 40 H 1.09001 * 109.52345 * 297.11090 * 10 9 8 41 41 H 0.97000 * 120.00040 * 179.97438 * 16 15 13 42 42 H 1.09007 * 108.81476 * 212.71992 * 22 7 6 43 43 H 1.08997 * 108.81599 * 330.99947 * 22 7 6 44 44 H 1.09000 * 108.71394 * 313.04959 * 23 3 2 45 45 H 1.08999 * 108.70846 * 71.06119 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6762 2.0551 -1.2313 5 6 2.8850 2.8990 -1.6790 6 6 2.9640 4.1775 -0.9816 7 6 3.1335 3.9886 0.5418 8 6 3.6581 5.2958 1.1417 9 6 5.0160 5.6272 0.5153 10 6 5.9741 4.4552 0.7499 11 6 5.3607 3.1805 0.1648 12 1 5.2372 3.2975 -0.9119 13 6 6.2703 2.0115 0.4427 14 1 6.0986 1.3874 1.3073 15 6 7.3215 1.7388 -0.4067 16 7 8.0409 0.6514 -0.2345 17 14 7.7239 2.9138 -1.8019 18 1 8.5969 4.0031 -1.2955 19 1 8.4280 2.1770 -2.8821 20 1 6.4669 3.4954 -2.3374 21 8 4.0867 2.9471 0.7682 22 6 1.7997 3.6251 1.1380 23 6 1.5747 2.1047 1.2139 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.8156 2.7038 -1.0684 30 1 1.4397 1.3170 -1.9978 31 1 2.8069 3.0859 -2.7500 32 1 3.7983 2.3359 -1.4871 33 1 2.0508 4.7422 -1.1703 34 1 3.8148 4.7392 -1.3670 35 1 3.7722 5.1819 2.2196 36 1 2.9540 6.1010 0.9321 37 1 4.8937 5.7894 -0.5557 38 1 5.4201 6.5283 0.9767 39 1 6.9262 4.6595 0.2601 40 1 6.1346 4.3245 1.8201 41 1 8.7802 0.4593 -0.8323 42 1 1.7395 4.0401 2.1442 43 1 1.0106 4.0674 0.5299 44 1 0.5115 1.9156 1.3625 45 1 2.1202 1.7129 2.0723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = -39.096419 kcal Electronic energy + Delta-G solvation = -23170.432294 eV Core-core repulsion = 20187.866361 eV Total energy + Delta-G solvation = -2982.565933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07220 -37.50420 -33.96332 -32.76164 -32.60741 -31.89795 -29.95630 -28.28528 -25.69956 -25.38505 -23.70764 -22.11922 -21.56317 -20.48115 -19.06930 -18.38766 -16.81645 -15.86814 -15.47454 -15.19563 -14.62159 -14.53076 -14.02211 -13.84175 -13.66849 -13.14390 -12.97822 -12.61984 -12.52567 -12.33915 -12.11233 -11.85459 -11.56301 -11.40581 -11.34172 -10.99431 -10.76883 -10.69439 -10.57183 -10.53543 -10.30541 -10.15278 -9.96577 -9.90859 -9.68060 -9.47472 -8.77206 -8.40878 -8.01704 -7.49376 -6.02179 -3.98608 3.29346 3.37348 3.37754 4.34317 4.43414 4.72515 5.11478 5.18587 5.21881 5.25705 5.34256 5.37205 5.47505 5.56032 5.58298 5.60382 5.70444 5.75873 5.84319 5.89040 5.96988 6.01205 6.09278 6.11736 6.21620 6.24919 6.30940 6.36803 6.41917 6.46205 6.51422 6.54090 6.62989 6.78638 6.86073 6.89095 6.92117 7.16677 7.46881 7.64964 7.82981 7.83928 8.33606 8.91644 9.13397 9.60963 11.11145 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.008662 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.488978 B = 3231.815876 C = 3972.928229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.057 3.943 3 N -0.520 5.520 4 C 0.074 3.926 5 C -0.123 4.123 6 C -0.140 4.140 7 C 0.124 3.876 8 C -0.137 4.137 9 C -0.127 4.127 10 C -0.150 4.150 11 C 0.184 3.816 12 H 0.027 0.973 13 C -0.490 4.490 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.897 5.897 17 Si 0.865 3.135 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.262 1.262 21 O -0.332 6.332 22 C -0.102 4.102 23 C 0.080 3.920 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.170 5.947 -0.707 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.071 4.071 3 N -0.243 5.243 4 C -0.054 4.054 5 C -0.161 4.161 6 C -0.178 4.178 7 C 0.083 3.917 8 C -0.175 4.175 9 C -0.165 4.165 10 C -0.189 4.189 11 C 0.127 3.873 12 H 0.044 0.956 13 C -0.528 4.528 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.535 5.535 17 Si 0.693 3.307 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.187 1.187 21 O -0.250 6.250 22 C -0.140 4.140 23 C -0.047 4.047 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.553 5.668 -0.658 14.705 hybrid contribution -0.387 1.042 -1.012 1.503 sum -13.940 6.710 -1.670 15.561 Atomic orbital electron populations 1.22509 0.99450 1.01643 1.01526 1.22161 0.91420 0.90626 1.02890 1.60637 1.61240 1.01203 1.01177 1.21683 0.95726 0.96494 0.91543 1.20566 1.01441 0.96750 0.97371 1.21237 1.01004 0.98199 0.97320 1.20895 0.90036 0.88314 0.92491 1.22156 0.97044 0.97647 1.00619 1.21765 0.95937 0.98790 0.99964 1.22529 0.97822 0.96269 1.02259 1.20230 0.81513 0.92946 0.92608 0.95579 1.20751 1.09197 1.11306 1.11574 0.90256 1.24794 0.96398 0.94685 0.96744 1.69891 1.20369 1.24343 1.38941 0.87100 0.79064 0.81678 0.82846 1.20145 1.21514 1.18719 1.88193 1.21271 1.40214 1.75354 1.21356 0.95749 0.96063 1.00784 1.22070 0.96321 0.92888 0.93395 0.93128 0.92641 0.92583 0.90939 0.90807 0.95270 0.92306 0.93615 0.88462 0.93338 0.91856 0.91653 0.92669 0.92587 0.93166 0.92866 0.91899 0.92653 0.91488 0.92258 0.95834 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.41 37.16 0.35 -1.88 16 2 C 0.06 0.83 5.84 -3.82 -0.02 0.81 16 3 N -0.52 -8.65 3.49 -234.56 -0.82 -9.47 16 4 C 0.07 1.14 4.39 -4.64 -0.02 1.12 16 5 C -0.12 -2.16 5.01 -29.56 -0.15 -2.31 16 6 C -0.14 -2.35 3.69 -29.36 -0.11 -2.46 16 7 C 0.12 2.16 0.73 -91.03 -0.07 2.09 16 8 C -0.14 -2.21 4.78 -26.59 -0.13 -2.34 16 9 C -0.13 -2.24 5.72 -26.54 -0.15 -2.39 16 10 C -0.15 -3.27 5.19 -26.59 -0.14 -3.41 16 11 C 0.18 4.43 1.27 -27.84 -0.04 4.39 16 12 H 0.03 0.65 3.02 -51.93 -0.16 0.50 16 13 C -0.49 -14.09 9.25 -34.44 -0.32 -14.41 16 14 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 17 Si 0.87 21.54 25.81 -169.99 -4.39 17.15 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.26 -6.23 6.14 56.52 0.35 -5.89 16 21 O -0.33 -7.34 7.38 -35.23 -0.26 -7.60 16 22 C -0.10 -1.50 4.82 -27.49 -0.13 -1.64 16 23 C 0.08 1.23 4.76 -2.78 -0.01 1.22 16 24 H 0.05 0.58 7.24 -51.93 -0.38 0.20 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.64 6.17 -51.93 -0.32 0.32 16 27 H 0.07 1.06 7.92 -51.93 -0.41 0.64 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.41 6.81 -51.93 -0.35 0.06 16 30 H 0.06 0.84 7.25 -51.93 -0.38 0.46 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.12 5.53 -51.93 -0.29 1.83 16 33 H 0.05 0.70 7.58 -51.93 -0.39 0.31 16 34 H 0.06 1.13 5.01 -51.93 -0.26 0.87 16 35 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.97 6.15 -51.93 -0.32 0.65 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.19 6.24 -51.93 -0.32 0.87 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 43 H 0.06 0.78 6.67 -51.93 -0.35 0.44 16 44 H 0.02 0.32 5.74 -51.93 -0.30 0.02 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -30.16 311.90 -8.64 -38.80 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.62 Total: 2.35 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.03 Total: -19.12 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.04 Total: -36.28 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.26 Total: -7.60 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.39 Total: 17.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.16 -8.64 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.296 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds