Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46905 * 109.46756 * 2 1 4 4 C 1.44322 * 111.00021 * 293.95814 * 3 2 1 5 5 C 1.54071 * 108.38984 * 221.36690 * 4 3 2 6 6 C 1.45846 * 112.56672 * 278.85765 * 5 4 3 7 7 C 1.54447 * 111.73542 * 61.47531 * 6 5 4 8 8 C 1.53093 * 108.64014 * 161.78082 * 7 6 5 9 9 C 1.53172 * 109.16600 * 299.25818 * 8 7 6 10 10 C 1.53190 * 109.04421 * 302.98527 * 9 8 7 11 11 C 1.53087 * 109.14159 * 57.01855 * 10 9 8 12 12 H 1.09001 * 109.48567 * 62.32311 * 11 10 9 13 13 C 1.50703 * 109.48560 * 182.37853 * 11 10 9 14 14 H 1.08001 * 119.99586 * 95.06478 * 13 11 10 15 15 C 1.37875 * 119.99691 * 275.06832 * 13 11 10 16 16 N 1.31514 * 119.99583 * 186.16640 * 15 13 11 17 17 Si 1.86796 * 120.00221 * 6.16557 * 15 13 11 18 18 H 1.48501 * 109.47120 * 84.82721 * 17 15 13 19 19 H 1.48502 * 109.46995 * 204.82331 * 17 15 13 20 20 H 1.48499 * 109.47217 * 324.82683 * 17 15 13 21 21 O 1.42884 * 109.38231 * 302.34984 * 11 10 9 22 22 C 1.50558 * 108.83554 * 282.47130 * 7 6 5 23 23 C 1.47966 * 110.99661 * 61.48805 * 3 2 1 24 24 H 1.08993 * 109.47456 * 60.00298 * 1 2 3 25 25 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46644 * 299.99343 * 1 2 3 27 27 H 1.08999 * 109.46644 * 240.00657 * 2 1 3 28 28 H 1.08993 * 109.47091 * 120.00387 * 2 1 3 29 29 H 1.08993 * 109.67995 * 101.64154 * 4 3 2 30 30 H 1.09003 * 109.70754 * 341.10639 * 4 3 2 31 31 H 1.09002 * 108.85945 * 158.05793 * 5 4 3 32 32 H 1.08997 * 108.85977 * 39.65026 * 5 4 3 33 33 H 1.09007 * 109.02233 * 300.89297 * 6 5 4 34 34 H 1.08993 * 108.96628 * 182.02297 * 6 5 4 35 35 H 1.08992 * 109.52417 * 179.35021 * 8 7 6 36 36 H 1.09002 * 109.52056 * 59.16552 * 8 7 6 37 37 H 1.09005 * 109.53935 * 62.85131 * 9 8 7 38 38 H 1.09000 * 109.54067 * 183.02437 * 9 8 7 39 39 H 1.09000 * 109.51943 * 176.91682 * 10 9 8 40 40 H 1.09001 * 109.52345 * 297.11090 * 10 9 8 41 41 H 0.97000 * 120.00040 * 179.97438 * 16 15 13 42 42 H 1.09007 * 108.81476 * 212.71992 * 22 7 6 43 43 H 1.08997 * 108.81599 * 330.99947 * 22 7 6 44 44 H 1.09000 * 108.71394 * 313.04959 * 23 3 2 45 45 H 1.08999 * 108.70846 * 71.06119 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6762 2.0551 -1.2313 5 6 2.8850 2.8990 -1.6790 6 6 2.9640 4.1775 -0.9816 7 6 3.1335 3.9886 0.5418 8 6 3.6581 5.2958 1.1417 9 6 5.0160 5.6272 0.5153 10 6 5.9741 4.4552 0.7499 11 6 5.3607 3.1805 0.1648 12 1 5.2372 3.2975 -0.9119 13 6 6.2703 2.0115 0.4427 14 1 6.0986 1.3874 1.3073 15 6 7.3215 1.7388 -0.4067 16 7 8.0409 0.6514 -0.2345 17 14 7.7239 2.9138 -1.8019 18 1 8.5969 4.0031 -1.2955 19 1 8.4280 2.1770 -2.8821 20 1 6.4669 3.4954 -2.3374 21 8 4.0867 2.9471 0.7682 22 6 1.7997 3.6251 1.1380 23 6 1.5747 2.1047 1.2139 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.8156 2.7038 -1.0684 30 1 1.4397 1.3170 -1.9978 31 1 2.8069 3.0859 -2.7500 32 1 3.7983 2.3359 -1.4871 33 1 2.0508 4.7422 -1.1703 34 1 3.8148 4.7392 -1.3670 35 1 3.7722 5.1819 2.2196 36 1 2.9540 6.1010 0.9321 37 1 4.8937 5.7894 -0.5557 38 1 5.4201 6.5283 0.9767 39 1 6.9262 4.6595 0.2601 40 1 6.1346 4.3245 1.8201 41 1 8.7802 0.4593 -0.8323 42 1 1.7395 4.0401 2.1442 43 1 1.0106 4.0674 0.5299 44 1 0.5115 1.9156 1.3625 45 1 2.1202 1.7129 2.0723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = -58.404815 kcal Electronic energy + Delta-G solvation = -23171.269569 eV Core-core repulsion = 20187.866361 eV Total energy + Delta-G solvation = -2983.403208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46655 -38.83825 -35.57538 -34.40504 -34.20688 -33.46681 -31.28853 -29.78303 -27.40393 -26.57272 -25.14489 -23.38577 -23.25700 -21.93215 -20.33256 -19.92716 -18.86352 -17.22872 -16.98822 -16.70667 -16.04920 -15.79626 -15.69716 -15.35514 -14.78788 -14.74391 -14.39617 -14.23904 -13.99352 -13.72369 -13.43706 -13.10483 -12.99907 -12.80321 -12.70329 -12.64038 -12.53660 -12.16649 -11.87539 -11.78576 -11.72174 -11.68392 -11.46974 -11.35700 -11.33503 -10.99311 -10.85377 -10.31856 -9.65309 -8.66762 -8.28962 -6.30638 1.29303 1.31792 1.41096 2.31345 2.97380 3.17591 3.39328 3.87003 3.97391 4.00829 4.13531 4.20114 4.22400 4.25222 4.40885 4.41269 4.46792 4.52981 4.60045 4.71579 4.72883 4.75307 4.78697 4.88080 4.91274 4.99457 5.02737 5.08229 5.13553 5.14455 5.20473 5.23513 5.29624 5.37450 5.39847 5.45373 5.49587 5.69654 5.70780 5.84302 6.19861 6.48577 6.67515 6.74507 7.14473 7.38012 8.88841 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.008662 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.488978 B = 3231.815876 C = 3972.928229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 N -0.554 5.554 4 C 0.081 3.919 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.110 3.890 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.151 4.151 11 C 0.197 3.803 12 H 0.024 0.976 13 C -0.502 4.502 14 H 0.022 0.978 15 C 0.017 3.983 16 N -0.948 5.948 17 Si 0.933 3.067 18 H -0.260 1.260 19 H -0.286 1.286 20 H -0.243 1.243 21 O -0.356 6.356 22 C -0.101 4.101 23 C 0.081 3.919 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.853 9.030 -2.015 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.072 4.072 3 N -0.278 5.278 4 C -0.048 4.048 5 C -0.162 4.162 6 C -0.176 4.176 7 C 0.070 3.930 8 C -0.171 4.171 9 C -0.159 4.159 10 C -0.189 4.189 11 C 0.140 3.860 12 H 0.042 0.958 13 C -0.540 4.540 14 H 0.041 0.959 15 C -0.179 4.179 16 N -0.588 5.588 17 Si 0.757 3.243 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.167 1.167 21 O -0.275 6.275 22 C -0.138 4.138 23 C -0.045 4.045 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.261 8.765 -1.950 18.576 hybrid contribution 0.416 -0.040 -0.505 0.655 sum -15.845 8.726 -2.455 18.255 Atomic orbital electron populations 1.22351 0.96532 1.02738 1.02034 1.22112 0.93798 0.89664 1.01655 1.60503 1.62933 1.02204 1.02185 1.21626 0.95408 0.96670 0.91048 1.20562 1.00058 0.96950 0.98638 1.21228 1.02230 0.97882 0.96244 1.21334 0.90043 0.87832 0.93787 1.22157 0.96920 0.97941 1.00105 1.21732 0.95643 0.97504 1.01027 1.22388 0.98504 0.97169 1.00828 1.19843 0.81898 0.91687 0.92602 0.95837 1.21030 1.10759 1.12383 1.09805 0.95912 1.25675 0.96021 0.96414 0.99829 1.70057 1.21357 1.26719 1.40682 0.86011 0.79705 0.79505 0.79130 1.18538 1.21163 1.16664 1.88136 1.21180 1.42903 1.75319 1.21411 0.94814 0.95538 1.02060 1.22030 0.97254 0.93338 0.91922 0.92298 0.91343 0.92130 0.91856 0.92524 0.92865 0.91662 0.92134 0.93598 0.89803 0.92925 0.92059 0.88833 0.91705 0.90634 0.93817 0.93495 0.92481 0.90123 0.89333 0.93250 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 9.41 71.98 0.68 -3.06 16 2 C 0.06 1.62 5.84 86.30 0.50 2.12 16 3 N -0.55 -18.20 3.49 -896.01 -3.13 -21.33 16 4 C 0.08 2.30 4.39 87.15 0.38 2.69 16 5 C -0.12 -4.11 5.01 28.76 0.14 -3.97 16 6 C -0.14 -4.17 3.69 28.89 0.11 -4.07 16 7 C 0.11 3.57 0.73 -11.06 -0.01 3.56 16 8 C -0.13 -3.83 4.78 30.68 0.15 -3.68 16 9 C -0.12 -3.91 5.72 30.72 0.18 -3.73 16 10 C -0.15 -6.48 5.19 30.69 0.16 -6.32 16 11 C 0.20 9.66 1.27 29.88 0.04 9.70 16 12 H 0.02 1.19 3.02 -2.39 -0.01 1.18 16 13 C -0.50 -30.59 9.25 25.60 0.24 -30.36 16 14 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 15 C 0.02 1.06 5.47 84.65 0.46 1.52 16 16 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 17 Si 0.93 45.22 25.81 68.60 1.77 46.99 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.24 -10.91 6.14 99.48 0.61 -10.30 16 21 O -0.36 -15.99 7.38 -148.98 -1.10 -17.09 16 22 C -0.10 -2.64 4.82 30.10 0.15 -2.50 16 23 C 0.08 2.39 4.76 86.40 0.41 2.80 16 24 H 0.06 1.16 7.24 -2.39 -0.02 1.14 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.22 6.17 -2.39 -0.01 1.21 16 27 H 0.06 1.90 7.92 -2.39 -0.02 1.88 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.26 6.81 -2.39 -0.02 1.25 16 30 H 0.06 1.74 7.25 -2.39 -0.02 1.72 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.01 5.53 -2.39 -0.01 2.00 16 33 H 0.08 1.95 7.58 -2.38 -0.02 1.94 16 34 H 0.05 1.69 5.01 -2.39 -0.01 1.68 16 35 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.00 6.15 -2.38 -0.01 1.98 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.92 6.24 -2.39 -0.01 1.90 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 42 H 0.08 1.89 7.78 -2.38 -0.02 1.87 16 43 H 0.09 1.84 6.67 -2.39 -0.02 1.82 16 44 H 0.05 1.18 5.74 -2.39 -0.01 1.17 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.74 311.90 2.29 -68.45 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.86 Total: 19.30 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.58 Total: -35.30 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.83 Total: -82.35 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -1.10 Total: -17.09 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.77 Total: 46.99 kcal Total: -70.74 2.29 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.050 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds