Wall clock time and date at job start Mon Mar 30 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.46676 * 2 1 4 4 C 1.44305 * 111.00100 * 75.60253 * 3 2 1 5 5 C 1.53987 * 108.31927 * 221.34460 * 4 3 2 6 6 C 1.45855 * 112.67497 * 278.63738 * 5 4 3 7 7 C 1.54539 * 111.67296 * 61.49550 * 6 5 4 8 8 C 1.53124 * 108.58661 * 162.20135 * 7 6 5 9 9 C 1.53185 * 109.14151 * 184.16604 * 8 7 6 10 10 C 1.53182 * 108.98837 * 57.13339 * 9 8 7 11 11 C 1.53117 * 109.09567 * 302.81944 * 10 9 8 12 12 H 1.08996 * 109.48372 * 297.75161 * 11 10 9 13 13 C 1.50692 * 109.48715 * 177.69699 * 11 10 9 14 14 H 1.08002 * 120.00523 * 275.24625 * 13 11 10 15 15 C 1.37878 * 120.00099 * 95.24197 * 13 11 10 16 16 N 1.31518 * 120.00030 * 353.84529 * 15 13 11 17 17 Si 1.86803 * 120.00154 * 173.84900 * 15 13 11 18 18 H 1.48498 * 109.47015 * 90.00158 * 17 15 13 19 19 H 1.48506 * 109.46971 * 210.00049 * 17 15 13 20 20 H 1.48495 * 109.47073 * 329.99597 * 17 15 13 21 21 O 1.42880 * 109.38407 * 57.72121 * 11 10 9 22 22 C 1.50550 * 108.85358 * 282.74350 * 7 6 5 23 23 C 1.47953 * 110.99733 * 203.04539 * 3 2 1 24 24 H 1.09004 * 109.46591 * 181.06580 * 1 2 3 25 25 H 1.09004 * 109.46831 * 301.05901 * 1 2 3 26 26 H 1.08997 * 109.47112 * 61.06544 * 1 2 3 27 27 H 1.08996 * 109.46911 * 240.00167 * 2 1 3 28 28 H 1.08997 * 109.47092 * 119.99921 * 2 1 3 29 29 H 1.08999 * 109.69590 * 101.64131 * 4 3 2 30 30 H 1.08994 * 109.72930 * 341.07384 * 4 3 2 31 31 H 1.08999 * 108.84352 * 157.81567 * 5 4 3 32 32 H 1.09003 * 108.75939 * 39.40312 * 5 4 3 33 33 H 1.09002 * 109.03973 * 300.93507 * 6 5 4 34 34 H 1.08999 * 109.04264 * 182.06453 * 6 5 4 35 35 H 1.09001 * 109.52611 * 64.26719 * 8 7 6 36 36 H 1.08997 * 109.58680 * 304.09745 * 8 7 6 37 37 H 1.09000 * 109.55356 * 297.27851 * 9 8 7 38 38 H 1.09008 * 109.63667 * 177.03286 * 9 8 7 39 39 H 1.08998 * 109.53533 * 182.93160 * 10 9 8 40 40 H 1.09006 * 109.59419 * 62.73673 * 10 9 8 41 41 H 0.96992 * 120.00485 * 185.07071 * 16 15 13 42 42 H 1.09012 * 108.78892 * 212.65758 * 22 7 6 43 43 H 1.08998 * 108.79427 * 330.87003 * 22 7 6 44 44 H 1.08999 * 108.70987 * 313.15566 * 23 3 2 45 45 H 1.08998 * 108.71370 * 71.29438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8761 1.9843 1.3049 5 6 1.3798 3.4304 1.1215 6 6 2.4577 4.3580 0.7973 7 6 3.1486 3.9871 -0.5344 8 6 3.9332 5.2040 -1.0327 9 6 4.5380 4.8849 -2.4034 10 6 3.4131 4.4879 -3.3643 11 6 2.6497 3.2974 -2.7774 12 1 3.3227 2.4453 -2.6820 13 6 1.5056 2.9352 -3.6887 14 1 0.5622 3.4540 -3.6035 15 6 1.6630 1.9414 -4.6314 16 7 2.8439 1.3934 -4.8183 17 14 0.1990 1.3734 -5.6432 18 1 0.1062 2.1891 -6.8807 19 1 0.3721 -0.0565 -6.0048 20 1 -1.0448 1.5359 -4.8486 21 8 2.1405 3.6489 -1.4896 22 6 4.0712 2.8216 -0.2957 23 6 3.3947 1.4613 -0.5407 24 1 -0.3633 -1.0276 0.0191 25 1 -0.3633 0.5302 0.8804 26 1 -0.3633 0.4972 -0.8994 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8393 1.9885 1.8151 30 1 1.1522 1.4191 1.8917 31 1 0.8995 3.7574 2.0437 32 1 0.6450 3.4494 0.3165 33 1 3.1964 4.3387 1.5985 34 1 2.0482 5.3650 0.7171 35 1 4.7312 5.4367 -0.3276 36 1 3.2636 6.0596 -1.1203 37 1 5.2440 4.0599 -2.3075 38 1 5.0544 5.7638 -2.7895 39 1 3.8387 4.2086 -4.3281 40 1 2.7316 5.3283 -3.4965 41 1 2.9716 0.7475 -5.5305 42 1 4.9300 2.9116 -0.9611 43 1 4.4235 2.8580 0.7352 44 1 3.9974 0.6819 -0.0745 45 1 3.3587 1.2791 -1.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:17 Heat of formation + Delta-G solvation = -45.977708 kcal Electronic energy + Delta-G solvation = -23288.621964 eV Core-core repulsion = 20305.757636 eV Total energy + Delta-G solvation = -2982.864328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78683 -37.00772 -34.17835 -32.59812 -32.32214 -31.40777 -30.12271 -27.79987 -25.66078 -25.14569 -23.33667 -21.79321 -21.57730 -19.97414 -19.54911 -18.09864 -16.47383 -15.84933 -15.32914 -14.82554 -14.43802 -14.17529 -13.87278 -13.74124 -13.60678 -13.14082 -12.52288 -12.42087 -12.24388 -12.12974 -11.92327 -11.70950 -11.35459 -11.10343 -10.92964 -10.87062 -10.69162 -10.32377 -10.29161 -10.24846 -10.23439 -10.12522 -10.03139 -9.94798 -9.75796 -9.18430 -8.59014 -8.41153 -7.77045 -7.30775 -5.98913 -3.99093 3.34118 3.40858 3.47431 4.43597 4.46899 5.00427 5.18088 5.35550 5.36555 5.44853 5.57132 5.61122 5.69628 5.76197 5.82187 5.87179 5.89786 5.97283 5.98386 6.05504 6.17964 6.24075 6.28292 6.34438 6.41874 6.47131 6.50284 6.54724 6.55611 6.68915 6.72256 6.80609 6.87922 7.00223 7.10017 7.19706 7.24735 7.40657 7.81903 7.86466 7.95660 8.02733 8.43152 8.97210 9.22373 9.66082 11.09551 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.010092 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.092728 B = 2773.680117 C = 3904.583749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 N -0.518 5.518 4 C 0.069 3.931 5 C -0.109 4.109 6 C -0.097 4.097 7 C 0.128 3.872 8 C -0.137 4.137 9 C -0.124 4.124 10 C -0.137 4.137 11 C 0.204 3.796 12 H 0.053 0.947 13 C -0.487 4.487 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.272 1.272 21 O -0.349 6.349 22 C -0.138 4.138 23 C 0.071 3.929 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.011 0.989 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 1.224 10.754 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 N -0.242 5.242 4 C -0.060 4.060 5 C -0.148 4.148 6 C -0.134 4.134 7 C 0.087 3.913 8 C -0.175 4.175 9 C -0.162 4.162 10 C -0.176 4.176 11 C 0.149 3.851 12 H 0.070 0.930 13 C -0.525 4.525 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.197 1.197 21 O -0.268 6.268 22 C -0.176 4.176 23 C -0.055 4.055 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.029 0.971 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.073 1.295 10.432 10.567 hybrid contribution 0.280 -0.697 -0.198 0.776 sum 1.353 0.599 10.234 10.340 Atomic orbital electron populations 1.21754 0.95359 1.00170 1.02758 1.21966 0.96010 0.89163 0.99555 1.60481 1.22915 1.16571 1.24270 1.21743 0.98515 0.95885 0.89817 1.20341 0.99588 0.93928 1.00899 1.20570 0.98109 0.99273 0.95472 1.20802 0.89060 0.91188 0.90274 1.22183 0.99269 0.98922 0.97138 1.21724 0.98934 0.99757 0.95753 1.22294 0.96032 1.00810 0.98418 1.19971 0.94589 0.91381 0.79197 0.92983 1.20891 0.98730 1.17461 1.15397 0.92485 1.24878 0.95802 0.95164 0.97667 1.69904 1.21843 1.30136 1.31646 0.86558 0.83373 0.77788 0.80101 1.20911 1.21315 1.19671 1.88136 1.29985 1.87553 1.21171 1.21975 0.99337 0.95656 1.00583 1.22390 0.86518 0.94367 1.02246 0.93479 0.93344 0.91136 0.91204 0.96372 0.95443 0.92425 0.93898 0.89300 0.93190 0.92495 0.93087 0.91939 0.92688 0.93765 0.92117 0.93681 0.92976 0.91356 0.93152 0.97112 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.01 37.16 0.37 -1.86 16 2 C 0.06 1.02 5.50 -3.82 -0.02 1.00 16 3 N -0.52 -9.50 3.26 -234.64 -0.77 -10.27 16 4 C 0.07 1.09 5.06 -4.70 -0.02 1.07 16 5 C -0.11 -1.76 5.19 -29.60 -0.15 -1.91 16 6 C -0.10 -1.55 4.55 -29.30 -0.13 -1.68 16 7 C 0.13 2.36 0.62 -90.97 -0.06 2.31 16 8 C -0.14 -2.39 4.79 -26.57 -0.13 -2.52 16 9 C -0.12 -2.35 5.79 -26.54 -0.15 -2.51 16 10 C -0.14 -3.15 5.40 -26.58 -0.14 -3.30 16 11 C 0.20 5.09 2.10 -27.83 -0.06 5.03 16 12 H 0.05 1.39 4.17 -51.93 -0.22 1.17 16 13 C -0.49 -13.53 8.68 -34.44 -0.30 -13.83 16 14 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 15 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 16 N -0.90 -25.28 12.85 55.43 0.71 -24.57 16 17 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 O -0.35 -7.98 7.20 -35.23 -0.25 -8.24 16 22 C -0.14 -2.44 3.98 -27.49 -0.11 -2.55 16 23 C 0.07 1.36 4.54 -2.78 -0.01 1.35 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.70 6.99 -51.93 -0.36 0.34 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 28 H 0.02 0.27 7.99 -51.93 -0.41 -0.14 16 29 H 0.03 0.42 6.79 -51.93 -0.35 0.06 16 30 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.71 7.25 -51.93 -0.38 1.33 16 33 H 0.05 0.71 7.59 -51.93 -0.39 0.31 16 34 H 0.06 0.89 7.90 -51.93 -0.41 0.47 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 37 H 0.05 1.04 6.37 -51.93 -0.33 0.71 16 38 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 42 H 0.07 1.23 5.87 -51.92 -0.30 0.93 16 43 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 44 H 0.01 0.19 8.02 -51.93 -0.42 -0.23 16 45 H 0.10 2.26 5.55 -51.93 -0.29 1.97 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -28.03 322.59 -9.37 -37.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.88 Total: 1.96 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.02 Total: -17.66 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.05 Total: -34.83 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.25 Total: -8.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.03 -9.37 -37.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.580 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds