Wall clock time and date at job start Mon Mar 30 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.46676 * 2 1 4 4 C 1.44305 * 111.00100 * 75.60253 * 3 2 1 5 5 C 1.53987 * 108.31927 * 221.34460 * 4 3 2 6 6 C 1.45855 * 112.67497 * 278.63738 * 5 4 3 7 7 C 1.54539 * 111.67296 * 61.49550 * 6 5 4 8 8 C 1.53124 * 108.58661 * 162.20135 * 7 6 5 9 9 C 1.53185 * 109.14151 * 184.16604 * 8 7 6 10 10 C 1.53182 * 108.98837 * 57.13339 * 9 8 7 11 11 C 1.53117 * 109.09567 * 302.81944 * 10 9 8 12 12 H 1.08996 * 109.48372 * 297.75161 * 11 10 9 13 13 C 1.50692 * 109.48715 * 177.69699 * 11 10 9 14 14 H 1.08002 * 120.00523 * 275.24625 * 13 11 10 15 15 C 1.37878 * 120.00099 * 95.24197 * 13 11 10 16 16 N 1.31518 * 120.00030 * 353.84529 * 15 13 11 17 17 Si 1.86803 * 120.00154 * 173.84900 * 15 13 11 18 18 H 1.48498 * 109.47015 * 90.00158 * 17 15 13 19 19 H 1.48506 * 109.46971 * 210.00049 * 17 15 13 20 20 H 1.48495 * 109.47073 * 329.99597 * 17 15 13 21 21 O 1.42880 * 109.38407 * 57.72121 * 11 10 9 22 22 C 1.50550 * 108.85358 * 282.74350 * 7 6 5 23 23 C 1.47953 * 110.99733 * 203.04539 * 3 2 1 24 24 H 1.09004 * 109.46591 * 181.06580 * 1 2 3 25 25 H 1.09004 * 109.46831 * 301.05901 * 1 2 3 26 26 H 1.08997 * 109.47112 * 61.06544 * 1 2 3 27 27 H 1.08996 * 109.46911 * 240.00167 * 2 1 3 28 28 H 1.08997 * 109.47092 * 119.99921 * 2 1 3 29 29 H 1.08999 * 109.69590 * 101.64131 * 4 3 2 30 30 H 1.08994 * 109.72930 * 341.07384 * 4 3 2 31 31 H 1.08999 * 108.84352 * 157.81567 * 5 4 3 32 32 H 1.09003 * 108.75939 * 39.40312 * 5 4 3 33 33 H 1.09002 * 109.03973 * 300.93507 * 6 5 4 34 34 H 1.08999 * 109.04264 * 182.06453 * 6 5 4 35 35 H 1.09001 * 109.52611 * 64.26719 * 8 7 6 36 36 H 1.08997 * 109.58680 * 304.09745 * 8 7 6 37 37 H 1.09000 * 109.55356 * 297.27851 * 9 8 7 38 38 H 1.09008 * 109.63667 * 177.03286 * 9 8 7 39 39 H 1.08998 * 109.53533 * 182.93160 * 10 9 8 40 40 H 1.09006 * 109.59419 * 62.73673 * 10 9 8 41 41 H 0.96992 * 120.00485 * 185.07071 * 16 15 13 42 42 H 1.09012 * 108.78892 * 212.65758 * 22 7 6 43 43 H 1.08998 * 108.79427 * 330.87003 * 22 7 6 44 44 H 1.08999 * 108.70987 * 313.15566 * 23 3 2 45 45 H 1.08998 * 108.71370 * 71.29438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8761 1.9843 1.3049 5 6 1.3798 3.4304 1.1215 6 6 2.4577 4.3580 0.7973 7 6 3.1486 3.9871 -0.5344 8 6 3.9332 5.2040 -1.0327 9 6 4.5380 4.8849 -2.4034 10 6 3.4131 4.4879 -3.3643 11 6 2.6497 3.2974 -2.7774 12 1 3.3227 2.4453 -2.6820 13 6 1.5056 2.9352 -3.6887 14 1 0.5622 3.4540 -3.6035 15 6 1.6630 1.9414 -4.6314 16 7 2.8439 1.3934 -4.8183 17 14 0.1990 1.3734 -5.6432 18 1 0.1062 2.1891 -6.8807 19 1 0.3721 -0.0565 -6.0048 20 1 -1.0448 1.5359 -4.8486 21 8 2.1405 3.6489 -1.4896 22 6 4.0712 2.8216 -0.2957 23 6 3.3947 1.4613 -0.5407 24 1 -0.3633 -1.0276 0.0191 25 1 -0.3633 0.5302 0.8804 26 1 -0.3633 0.4972 -0.8994 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8393 1.9885 1.8151 30 1 1.1522 1.4191 1.8917 31 1 0.8995 3.7574 2.0437 32 1 0.6450 3.4494 0.3165 33 1 3.1964 4.3387 1.5985 34 1 2.0482 5.3650 0.7171 35 1 4.7312 5.4367 -0.3276 36 1 3.2636 6.0596 -1.1203 37 1 5.2440 4.0599 -2.3075 38 1 5.0544 5.7638 -2.7895 39 1 3.8387 4.2086 -4.3281 40 1 2.7316 5.3283 -3.4965 41 1 2.9716 0.7475 -5.5305 42 1 4.9300 2.9116 -0.9611 43 1 4.4235 2.8580 0.7352 44 1 3.9974 0.6819 -0.0745 45 1 3.3587 1.2791 -1.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:16 Heat of formation + Delta-G solvation = -61.447685 kcal Electronic energy + Delta-G solvation = -23289.292793 eV Core-core repulsion = 20305.757636 eV Total energy + Delta-G solvation = -2983.535157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27774 -38.48822 -35.76635 -34.38047 -34.05879 -32.85359 -31.64052 -29.42825 -27.35579 -26.61780 -24.90443 -23.56947 -22.94446 -21.52337 -20.87255 -19.70676 -18.48912 -17.26235 -17.00496 -16.41199 -16.11114 -15.69514 -15.49352 -15.18596 -15.10581 -14.48883 -14.30838 -13.87304 -13.73661 -13.63205 -13.32311 -13.26506 -12.85956 -12.73366 -12.69629 -12.55355 -12.31552 -12.03962 -11.94416 -11.84451 -11.70367 -11.62166 -11.48112 -11.44790 -11.20784 -10.81020 -10.63090 -10.25757 -9.51604 -8.68872 -8.11884 -6.18595 1.38203 1.40551 1.51756 2.41778 3.09247 3.14539 3.61688 3.82154 4.00605 4.14400 4.19164 4.25667 4.31190 4.32811 4.41928 4.49516 4.53452 4.57036 4.67209 4.73325 4.76013 4.87331 4.88226 4.92429 4.96523 5.08250 5.11150 5.16571 5.18393 5.24391 5.32175 5.34881 5.42184 5.47090 5.52969 5.58587 5.62028 5.71453 5.83667 5.95187 6.38026 6.45190 6.72341 6.93102 7.29741 7.56316 8.95731 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.010092 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.092728 B = 2773.680117 C = 3904.583749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 N -0.542 5.542 4 C 0.070 3.930 5 C -0.106 4.106 6 C -0.094 4.094 7 C 0.113 3.887 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.134 4.134 11 C 0.213 3.787 12 H 0.033 0.967 13 C -0.510 4.510 14 H 0.037 0.963 15 C 0.025 3.975 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.273 1.273 21 O -0.367 6.367 22 C -0.133 4.133 23 C 0.079 3.921 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.023 0.977 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 1.718 13.273 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.068 4.068 3 N -0.267 5.267 4 C -0.058 4.058 5 C -0.145 4.145 6 C -0.131 4.131 7 C 0.073 3.927 8 C -0.170 4.170 9 C -0.155 4.155 10 C -0.172 4.172 11 C 0.157 3.843 12 H 0.051 0.949 13 C -0.548 4.548 14 H 0.056 0.944 15 C -0.174 4.174 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.198 1.198 21 O -0.286 6.286 22 C -0.171 4.171 23 C -0.048 4.048 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.041 0.959 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.405 1.799 12.959 13.159 hybrid contribution 0.160 -0.848 -0.941 1.277 sum 1.564 0.952 12.019 12.157 Atomic orbital electron populations 1.21682 0.94590 1.01368 1.01572 1.21982 0.96591 0.88720 0.99463 1.60398 1.22459 1.17612 1.26252 1.21806 0.99729 0.95618 0.88624 1.20310 0.98864 0.94459 1.00828 1.20593 0.98700 0.99327 0.94493 1.21211 0.88978 0.91971 0.90574 1.22161 1.00047 0.98189 0.96581 1.21650 0.97380 1.00572 0.95905 1.22134 0.97171 0.99712 0.98206 1.19635 0.93216 0.91396 0.80051 0.94922 1.21164 0.98938 1.17975 1.16747 0.94416 1.25526 0.98091 0.95127 0.98659 1.70001 1.23293 1.30496 1.32146 0.85681 0.80310 0.77614 0.78822 1.20019 1.20586 1.19811 1.88075 1.31896 1.87760 1.20892 1.21936 0.98633 0.94410 1.02147 1.22161 0.87576 0.95769 0.99336 0.91223 0.91859 0.94724 0.93797 0.93773 0.93924 0.90775 0.90917 0.93275 0.90019 0.92079 0.89511 0.92029 0.92824 0.91517 0.94894 0.94636 0.92890 0.92148 0.90052 0.95894 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 10.01 71.98 0.72 -3.40 16 2 C 0.06 1.99 5.50 86.30 0.48 2.47 16 3 N -0.54 -19.63 3.26 -896.27 -2.92 -22.55 16 4 C 0.07 2.02 5.06 87.12 0.44 2.46 16 5 C -0.11 -3.14 5.19 28.74 0.15 -3.00 16 6 C -0.09 -2.69 4.55 28.93 0.13 -2.56 16 7 C 0.11 3.99 0.62 -11.02 -0.01 3.99 16 8 C -0.13 -4.27 4.79 30.70 0.15 -4.12 16 9 C -0.12 -4.34 5.79 30.72 0.18 -4.17 16 10 C -0.13 -6.34 5.40 30.69 0.17 -6.17 16 11 C 0.21 11.07 2.10 29.88 0.06 11.13 16 12 H 0.03 1.85 4.17 -2.39 -0.01 1.84 16 13 C -0.51 -29.76 8.68 25.60 0.22 -29.53 16 14 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 15 C 0.02 1.41 5.45 84.65 0.46 1.87 16 16 N -0.92 -53.97 12.85 21.45 0.28 -53.70 16 17 Si 0.95 45.55 29.55 68.60 2.03 47.57 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 21 O -0.37 -17.07 7.20 -148.98 -1.07 -18.14 16 22 C -0.13 -4.50 3.98 30.10 0.12 -4.38 16 23 C 0.08 3.01 4.54 86.40 0.39 3.40 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.73 6.99 -2.38 -0.02 1.71 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.64 7.89 -2.39 -0.02 1.63 16 28 H 0.04 1.23 7.99 -2.39 -0.02 1.21 16 29 H 0.04 1.11 6.79 -2.39 -0.02 1.10 16 30 H 0.07 1.88 6.53 -2.39 -0.02 1.86 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.86 7.25 -2.39 -0.02 1.84 16 33 H 0.08 1.87 7.59 -2.39 -0.02 1.85 16 34 H 0.06 1.70 7.90 -2.39 -0.02 1.69 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 2.01 8.03 -2.39 -0.02 1.99 16 37 H 0.05 1.99 6.37 -2.39 -0.02 1.98 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.26 14.62 8.32 -92.71 -0.77 13.85 16 42 H 0.06 2.11 5.87 -2.38 -0.01 2.10 16 43 H 0.08 2.23 6.66 -2.39 -0.02 2.21 16 44 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 45 H 0.05 2.27 5.55 -2.39 -0.01 2.26 16 Total: -1.00 -63.89 322.59 2.91 -60.98 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.94 Total: 17.84 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.66 Total: -32.01 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -2.65 Total: -76.25 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.07 Total: -18.14 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -63.89 2.91 -60.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds