Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47079 * 2 1 4 4 C 1.47911 * 110.99763 * 293.95319 * 3 2 1 5 5 C 1.50494 * 112.31482 * 191.73203 * 4 3 2 6 6 C 1.53852 * 108.31016 * 94.08778 * 5 4 3 7 7 C 1.46273 * 112.86609 * 280.18564 * 6 5 4 8 8 C 1.53877 * 111.56625 * 180.46936 * 7 6 5 9 9 C 1.53044 * 109.09436 * 181.97643 * 8 7 6 10 10 C 1.53166 * 109.14662 * 302.11613 * 9 8 7 11 11 C 1.53097 * 109.04323 * 56.53050 * 10 9 8 12 12 H 1.09005 * 109.47397 * 62.71856 * 11 10 9 13 13 C 1.50703 * 109.47569 * 182.73354 * 11 10 9 14 14 H 1.07999 * 120.00043 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99862 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00098 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99837 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47031 * 90.00104 * 17 15 13 19 19 H 1.48500 * 109.46944 * 210.00058 * 17 15 13 20 20 H 1.48503 * 109.47063 * 330.00039 * 17 15 13 21 21 O 1.42770 * 109.44796 * 302.72471 * 11 10 9 22 22 C 1.54897 * 111.28066 * 60.71484 * 7 6 5 23 23 C 1.48231 * 110.99858 * 165.30170 * 3 2 1 24 24 H 1.08992 * 109.47132 * 60.00184 * 1 2 3 25 25 H 1.09003 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47114 * 300.00181 * 1 2 3 27 27 H 1.08998 * 109.47367 * 239.99888 * 2 1 3 28 28 H 1.09005 * 109.47077 * 119.99537 * 2 1 3 29 29 H 1.09000 * 108.91036 * 70.99553 * 4 3 2 30 30 H 1.09007 * 108.83832 * 312.40916 * 4 3 2 31 31 H 1.09002 * 109.69700 * 334.38218 * 5 4 3 32 32 H 1.09001 * 109.73251 * 213.81589 * 5 4 3 33 33 H 1.08998 * 108.80102 * 159.30966 * 6 5 4 34 34 H 1.09001 * 108.79759 * 41.05909 * 6 5 4 35 35 H 1.09004 * 109.53306 * 62.09391 * 8 7 6 36 36 H 1.09001 * 109.59445 * 301.89769 * 8 7 6 37 37 H 1.09004 * 109.52401 * 182.22276 * 9 8 7 38 38 H 1.08994 * 109.52727 * 62.01471 * 9 8 7 39 39 H 1.08998 * 109.54462 * 176.40619 * 10 9 8 40 40 H 1.09004 * 109.54569 * 296.66782 * 10 9 8 41 41 H 0.96996 * 120.00231 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.52803 * 42.71866 * 22 7 6 43 43 H 1.09003 * 109.53151 * 162.93063 * 22 7 6 44 44 H 1.09001 * 108.73062 * 205.49625 * 23 3 2 45 45 H 1.09004 * 108.73472 * 323.69201 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6678 2.0716 -1.2620 5 6 2.3869 3.3844 -1.4180 6 6 3.6669 3.1400 -2.2359 7 6 4.7564 2.5839 -1.4338 8 6 6.0240 2.3625 -2.2777 9 6 7.1080 1.7356 -1.3978 10 6 7.3804 2.6557 -0.2040 11 6 6.0708 2.8936 0.5524 12 1 5.7021 1.9469 0.9472 13 6 6.3145 3.8517 1.6899 14 1 7.3039 4.2514 1.8568 15 6 5.2744 4.2178 2.5177 16 7 4.0697 3.7307 2.3148 17 14 5.5763 5.4059 3.9273 18 1 5.3630 6.7977 3.4558 19 1 4.6336 5.1087 5.0355 20 1 6.9723 5.2555 4.4110 21 8 5.1018 3.4481 -0.3375 22 6 4.3643 1.2144 -0.8256 23 6 3.4588 1.4397 0.3511 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.5932 2.2533 -1.2775 30 1 1.9284 1.4243 -2.0994 31 1 2.6481 3.7792 -0.4362 32 1 1.7467 4.0948 -1.9411 33 1 3.9949 4.0863 -2.6661 34 1 3.4389 2.4482 -3.0468 35 1 6.3762 3.3189 -2.6641 36 1 5.7978 1.6945 -3.1088 37 1 8.0222 1.6120 -1.9785 38 1 6.7690 0.7639 -1.0388 39 1 8.1053 2.1858 0.4606 40 1 7.7740 3.6079 -0.5599 41 1 3.3379 3.9886 2.8969 42 1 3.8453 0.6177 -1.5757 43 1 5.2624 0.6901 -0.4990 44 1 3.6778 2.4179 0.7791 45 1 3.6654 0.6759 1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = -44.435350 kcal Electronic energy + Delta-G solvation = -23216.364803 eV Core-core repulsion = 20233.567356 eV Total energy + Delta-G solvation = -2982.797447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95658 -36.97790 -34.00311 -32.82898 -32.07634 -31.01302 -30.33851 -27.77732 -25.83103 -25.05309 -23.26520 -21.98647 -21.70494 -20.03382 -19.04716 -18.06339 -16.60513 -15.86400 -15.28222 -14.80605 -14.37141 -14.28435 -14.14708 -13.83553 -13.61928 -12.87045 -12.54076 -12.26303 -12.16329 -12.00826 -11.92927 -11.56174 -11.45844 -11.17601 -10.88374 -10.87269 -10.66451 -10.63382 -10.44934 -10.32396 -10.32306 -10.08476 -9.94106 -9.74521 -9.50775 -9.26583 -8.70832 -8.39852 -7.79211 -7.35210 -5.94496 -4.10534 3.33631 3.40715 3.42690 4.43348 4.55516 4.90976 5.23628 5.34028 5.38787 5.50628 5.59498 5.62988 5.66442 5.77443 5.78353 5.87673 5.94494 5.97675 6.03751 6.11386 6.14782 6.27427 6.29631 6.35658 6.39039 6.46446 6.50066 6.50462 6.59872 6.64739 6.69159 6.80003 6.86957 6.92072 6.97700 7.08145 7.22771 7.54463 7.74366 7.89912 7.99673 8.24649 8.40665 8.82228 9.14830 9.61009 11.06866 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.008935 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.789463 B = 3133.100122 C = 4141.243760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.072 3.928 5 C -0.123 4.123 6 C -0.094 4.094 7 C 0.112 3.888 8 C -0.138 4.138 9 C -0.123 4.123 10 C -0.144 4.144 11 C 0.212 3.788 12 H 0.024 0.976 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.080 3.920 16 N -0.854 5.854 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.344 6.344 22 C -0.169 4.169 23 C 0.020 3.980 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.265 0.735 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.182 0.818 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -5.342 -7.357 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.055 4.055 5 C -0.160 4.160 6 C -0.132 4.132 7 C 0.072 3.928 8 C -0.176 4.176 9 C -0.160 4.160 10 C -0.182 4.182 11 C 0.157 3.843 12 H 0.042 0.958 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.125 4.125 16 N -0.490 5.490 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.264 6.264 22 C -0.209 4.209 23 C -0.105 4.105 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.199 0.801 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.613 -4.921 -6.905 9.217 hybrid contribution 0.733 -0.331 -0.174 0.822 sum -2.880 -5.252 -7.079 9.273 Atomic orbital electron populations 1.21782 0.95944 1.00412 1.02167 1.22070 0.95223 0.90851 0.99592 1.62131 1.18036 1.13251 1.32912 1.21696 0.98945 0.95075 0.89789 1.21292 0.95049 0.96275 1.03400 1.20349 0.95094 1.00515 0.97228 1.20484 0.92173 0.90785 0.89394 1.22264 0.97102 1.00349 0.97892 1.21699 0.97412 0.99342 0.97565 1.22265 1.01437 0.98266 0.96267 1.19774 0.82593 0.95492 0.86472 0.95846 1.21020 0.95428 1.29980 1.09854 0.92072 1.25000 0.95090 0.95470 0.96981 1.69479 1.00009 1.42087 1.37471 0.86606 0.77974 0.81547 0.81853 1.20651 1.21174 1.20057 1.88490 1.61084 1.41372 1.35437 1.22666 1.00626 0.98003 0.99557 1.22884 0.82455 1.10238 0.94915 0.93153 0.93337 0.92004 0.96365 0.91581 0.92340 0.96392 0.87561 0.92444 0.92237 0.92731 0.92064 0.93186 0.93526 0.92260 0.92734 0.92681 0.92495 0.94084 0.91380 0.80128 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.84 37.16 0.37 -1.60 16 2 C 0.05 0.83 5.61 -3.82 -0.02 0.80 16 3 N -0.54 -10.18 4.68 -235.89 -1.10 -11.28 16 4 C 0.07 1.24 4.49 -4.52 -0.02 1.22 16 5 C -0.12 -2.23 5.60 -27.54 -0.15 -2.39 16 6 C -0.09 -1.68 4.34 -29.49 -0.13 -1.81 16 7 C 0.11 2.21 0.76 -92.36 -0.07 2.14 16 8 C -0.14 -2.46 5.01 -26.25 -0.13 -2.59 16 9 C -0.12 -2.20 5.68 -26.62 -0.15 -2.35 16 10 C -0.14 -3.03 5.38 -26.60 -0.14 -3.18 16 11 C 0.21 5.19 1.68 -27.83 -0.05 5.14 16 12 H 0.02 0.62 5.35 -51.93 -0.28 0.34 16 13 C -0.53 -14.16 8.79 -34.44 -0.30 -14.46 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 16 N -0.85 -23.12 10.32 55.43 0.57 -22.54 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 O -0.34 -8.30 7.38 -35.23 -0.26 -8.56 16 22 C -0.17 -3.30 3.81 -27.13 -0.10 -3.40 16 23 C 0.02 0.44 3.94 -4.49 -0.02 0.42 16 24 H 0.05 0.66 6.80 -51.93 -0.35 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.02 0.29 7.82 -51.93 -0.41 -0.12 16 28 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 29 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 30 H 0.02 0.30 6.38 -51.92 -0.33 -0.03 16 31 H 0.11 2.39 6.40 -51.93 -0.33 2.06 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.87 7.46 -51.93 -0.39 0.48 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.05 5.89 -51.93 -0.31 0.74 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.04 0.75 6.90 -51.93 -0.36 0.39 16 43 H 0.07 1.35 4.47 -51.93 -0.23 1.11 16 44 H 0.18 4.39 2.03 -51.93 -0.11 4.28 16 45 H 0.04 0.96 7.57 -51.93 -0.39 0.56 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -26.87 314.67 -9.68 -36.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.59 Total: 5.25 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.02 Total: -20.01 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.53 Total: -33.83 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.26 Total: -8.56 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.87 -9.68 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.882 kcal (2) G-P(sol) polarization free energy of solvation -26.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds