Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47079 * 2 1 4 4 C 1.47911 * 110.99763 * 293.95319 * 3 2 1 5 5 C 1.50494 * 112.31482 * 191.73203 * 4 3 2 6 6 C 1.53852 * 108.31016 * 94.08778 * 5 4 3 7 7 C 1.46273 * 112.86609 * 280.18564 * 6 5 4 8 8 C 1.53877 * 111.56625 * 180.46936 * 7 6 5 9 9 C 1.53044 * 109.09436 * 181.97643 * 8 7 6 10 10 C 1.53166 * 109.14662 * 302.11613 * 9 8 7 11 11 C 1.53097 * 109.04323 * 56.53050 * 10 9 8 12 12 H 1.09005 * 109.47397 * 62.71856 * 11 10 9 13 13 C 1.50703 * 109.47569 * 182.73354 * 11 10 9 14 14 H 1.07999 * 120.00043 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99862 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00098 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99837 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47031 * 90.00104 * 17 15 13 19 19 H 1.48500 * 109.46944 * 210.00058 * 17 15 13 20 20 H 1.48503 * 109.47063 * 330.00039 * 17 15 13 21 21 O 1.42770 * 109.44796 * 302.72471 * 11 10 9 22 22 C 1.54897 * 111.28066 * 60.71484 * 7 6 5 23 23 C 1.48231 * 110.99858 * 165.30170 * 3 2 1 24 24 H 1.08992 * 109.47132 * 60.00184 * 1 2 3 25 25 H 1.09003 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47114 * 300.00181 * 1 2 3 27 27 H 1.08998 * 109.47367 * 239.99888 * 2 1 3 28 28 H 1.09005 * 109.47077 * 119.99537 * 2 1 3 29 29 H 1.09000 * 108.91036 * 70.99553 * 4 3 2 30 30 H 1.09007 * 108.83832 * 312.40916 * 4 3 2 31 31 H 1.09002 * 109.69700 * 334.38218 * 5 4 3 32 32 H 1.09001 * 109.73251 * 213.81589 * 5 4 3 33 33 H 1.08998 * 108.80102 * 159.30966 * 6 5 4 34 34 H 1.09001 * 108.79759 * 41.05909 * 6 5 4 35 35 H 1.09004 * 109.53306 * 62.09391 * 8 7 6 36 36 H 1.09001 * 109.59445 * 301.89769 * 8 7 6 37 37 H 1.09004 * 109.52401 * 182.22276 * 9 8 7 38 38 H 1.08994 * 109.52727 * 62.01471 * 9 8 7 39 39 H 1.08998 * 109.54462 * 176.40619 * 10 9 8 40 40 H 1.09004 * 109.54569 * 296.66782 * 10 9 8 41 41 H 0.96996 * 120.00231 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.52803 * 42.71866 * 22 7 6 43 43 H 1.09003 * 109.53151 * 162.93063 * 22 7 6 44 44 H 1.09001 * 108.73062 * 205.49625 * 23 3 2 45 45 H 1.09004 * 108.73472 * 323.69201 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6678 2.0716 -1.2620 5 6 2.3869 3.3844 -1.4180 6 6 3.6669 3.1400 -2.2359 7 6 4.7564 2.5839 -1.4338 8 6 6.0240 2.3625 -2.2777 9 6 7.1080 1.7356 -1.3978 10 6 7.3804 2.6557 -0.2040 11 6 6.0708 2.8936 0.5524 12 1 5.7021 1.9469 0.9472 13 6 6.3145 3.8517 1.6899 14 1 7.3039 4.2514 1.8568 15 6 5.2744 4.2178 2.5177 16 7 4.0697 3.7307 2.3148 17 14 5.5763 5.4059 3.9273 18 1 5.3630 6.7977 3.4558 19 1 4.6336 5.1087 5.0355 20 1 6.9723 5.2555 4.4110 21 8 5.1018 3.4481 -0.3375 22 6 4.3643 1.2144 -0.8256 23 6 3.4588 1.4397 0.3511 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.5932 2.2533 -1.2775 30 1 1.9284 1.4243 -2.0994 31 1 2.6481 3.7792 -0.4362 32 1 1.7467 4.0948 -1.9411 33 1 3.9949 4.0863 -2.6661 34 1 3.4389 2.4482 -3.0468 35 1 6.3762 3.3189 -2.6641 36 1 5.7978 1.6945 -3.1088 37 1 8.0222 1.6120 -1.9785 38 1 6.7690 0.7639 -1.0388 39 1 8.1053 2.1858 0.4606 40 1 7.7740 3.6079 -0.5599 41 1 3.3379 3.9886 2.8969 42 1 3.8453 0.6177 -1.5757 43 1 5.2624 0.6901 -0.4990 44 1 3.6778 2.4179 0.7791 45 1 3.6654 0.6759 1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = -59.669009 kcal Electronic energy + Delta-G solvation = -23217.025384 eV Core-core repulsion = 20233.567356 eV Total energy + Delta-G solvation = -2983.458028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52364 -38.47726 -35.60046 -34.50384 -33.85511 -32.55176 -31.80300 -29.37375 -27.46162 -26.61148 -24.85619 -23.55023 -23.17297 -21.57808 -20.53094 -19.65895 -18.56218 -17.39344 -16.84251 -16.49587 -16.06530 -15.87100 -15.61879 -15.20435 -15.12458 -14.37691 -14.24962 -13.95236 -13.53433 -13.44977 -13.40448 -12.87339 -12.83501 -12.78995 -12.62467 -12.58964 -12.30680 -12.19093 -12.01652 -11.91736 -11.81981 -11.69343 -11.50146 -11.20648 -11.08275 -10.98612 -10.63737 -10.22912 -9.51694 -8.80401 -7.94805 -6.20324 1.44829 1.46646 1.55164 2.47155 3.09430 3.17882 3.61175 3.79180 3.99371 4.10996 4.15701 4.20152 4.28422 4.36659 4.44434 4.49120 4.52516 4.58073 4.67320 4.69483 4.79719 4.85120 4.89556 4.94716 4.98830 5.02055 5.04490 5.12414 5.16462 5.19933 5.24602 5.29112 5.34956 5.36937 5.42666 5.58044 5.67243 5.69846 5.85962 6.24776 6.40575 6.53615 6.65214 6.82635 7.34329 7.54977 9.01301 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.008935 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.789463 B = 3133.100122 C = 4141.243760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 N -0.556 5.556 4 C 0.075 3.925 5 C -0.119 4.119 6 C -0.095 4.095 7 C 0.104 3.896 8 C -0.135 4.135 9 C -0.117 4.117 10 C -0.142 4.142 11 C 0.216 3.784 12 H 0.001 0.999 13 C -0.555 4.555 14 H 0.053 0.947 15 C 0.037 3.963 16 N -0.867 5.867 17 Si 0.950 3.050 18 H -0.281 1.281 19 H -0.282 1.282 20 H -0.271 1.271 21 O -0.370 6.370 22 C -0.158 4.158 23 C 0.024 3.976 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.156 0.844 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -6.038 -9.283 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 N -0.282 5.282 4 C -0.052 4.052 5 C -0.157 4.157 6 C -0.133 4.133 7 C 0.064 3.936 8 C -0.172 4.172 9 C -0.155 4.155 10 C -0.180 4.180 11 C 0.160 3.840 12 H 0.018 0.982 13 C -0.592 4.592 14 H 0.071 0.929 15 C -0.166 4.166 16 N -0.503 5.503 17 Si 0.776 3.224 18 H -0.207 1.207 19 H -0.208 1.208 20 H -0.196 1.196 21 O -0.290 6.290 22 C -0.197 4.197 23 C -0.103 4.103 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.173 0.827 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.141 -5.625 -8.839 11.266 hybrid contribution 0.865 -0.126 0.430 0.975 sum -3.276 -5.750 -8.409 10.701 Atomic orbital electron populations 1.21719 0.93709 1.01994 1.02037 1.22127 0.96972 0.89258 0.99456 1.62067 1.16480 1.15215 1.34407 1.21723 0.99677 0.94450 0.89335 1.21226 0.95988 0.97292 1.01165 1.20401 0.94154 1.01259 0.97457 1.20812 0.93904 0.90198 0.88702 1.22239 0.95748 1.01018 0.98224 1.21662 0.98908 0.98409 0.96475 1.22163 0.99582 0.98767 0.97452 1.19525 0.84146 0.93598 0.86701 0.98180 1.21358 0.95280 1.30827 1.11730 0.92855 1.25673 0.95033 0.96884 0.99048 1.69686 1.00254 1.42594 1.37783 0.85713 0.77939 0.79447 0.79325 1.20710 1.20791 1.19605 1.88397 1.61221 1.42664 1.36722 1.22528 0.99961 0.98108 0.99129 1.22616 0.84561 1.07845 0.95253 0.92271 0.90932 0.93075 0.95493 0.92712 0.90734 0.94934 0.92371 0.90188 0.92147 0.89771 0.92210 0.90132 0.90685 0.92045 0.92665 0.93521 0.92974 0.92457 0.92159 0.82659 0.96345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.84 71.98 0.71 -2.70 16 2 C 0.05 1.55 5.61 86.30 0.48 2.03 16 3 N -0.56 -20.79 4.68 -900.24 -4.21 -25.01 16 4 C 0.07 2.42 4.49 85.30 0.38 2.80 16 5 C -0.12 -4.19 5.60 30.07 0.17 -4.03 16 6 C -0.10 -3.20 4.34 28.81 0.13 -3.07 16 7 C 0.10 3.97 0.76 -11.92 -0.01 3.96 16 8 C -0.13 -4.44 5.01 30.90 0.15 -4.28 16 9 C -0.12 -3.97 5.68 30.66 0.17 -3.80 16 10 C -0.14 -5.96 5.38 30.68 0.16 -5.79 16 11 C 0.22 10.85 1.68 29.88 0.05 10.90 16 12 H 0.00 0.04 5.35 -2.38 -0.01 0.02 16 13 C -0.55 -30.87 8.79 25.60 0.23 -30.64 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 15 C 0.04 2.06 5.40 84.66 0.46 2.52 16 16 N -0.87 -48.70 10.32 21.45 0.22 -48.48 16 17 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 O -0.37 -18.14 7.38 -148.98 -1.10 -19.24 16 22 C -0.16 -6.03 3.81 30.33 0.12 -5.92 16 23 C 0.02 1.02 3.94 85.14 0.34 1.36 16 24 H 0.06 1.36 6.80 -2.39 -0.02 1.35 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.03 0.79 7.82 -2.39 -0.02 0.77 16 28 H 0.05 1.79 7.67 -2.38 -0.02 1.77 16 29 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 30 H 0.03 0.96 6.38 -2.38 -0.02 0.95 16 31 H 0.06 2.67 6.40 -2.39 -0.02 2.65 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.33 7.46 -2.39 -0.02 2.32 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.06 2.06 5.89 -2.39 -0.01 2.05 16 39 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.06 1.96 6.90 -2.39 -0.02 1.94 16 43 H 0.06 2.37 4.47 -2.39 -0.01 2.36 16 44 H 0.16 7.81 2.03 -2.39 0.00 7.81 16 45 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 Total: -1.00 -59.78 314.67 1.43 -58.35 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.96 Total: 25.14 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.54 Total: -36.66 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -3.99 Total: -73.48 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.10 Total: -19.24 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.78 1.43 -58.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.321 kcal (2) G-P(sol) polarization free energy of solvation -59.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds