Wall clock time and date at job start Mon Mar 30 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47213 * 2 1 4 4 C 1.47911 * 110.99726 * 293.95030 * 3 2 1 5 5 C 1.50496 * 112.42722 * 191.60743 * 4 3 2 6 6 C 1.53945 * 108.33885 * 94.06390 * 5 4 3 7 7 C 1.46247 * 112.72117 * 280.55547 * 6 5 4 8 8 C 1.54962 * 111.46320 * 180.27409 * 7 6 5 9 9 C 1.55170 * 102.43602 * 101.18950 * 8 7 6 10 10 C 1.54893 * 100.87966 * 34.56990 * 9 8 7 11 11 C 1.52997 * 110.39543 * 82.16480 * 10 9 8 12 12 C 1.50697 * 110.31465 * 204.30138 * 10 9 8 13 13 H 1.08005 * 119.99571 * 357.14844 * 12 10 9 14 14 C 1.37874 * 120.00325 * 177.14802 * 12 10 9 15 15 N 1.31518 * 119.99629 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00109 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47316 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47309 * 119.99987 * 16 14 12 19 19 H 1.48507 * 109.46822 * 239.99956 * 16 14 12 20 20 O 1.43455 * 105.11645 * 323.21395 * 10 9 8 21 21 C 1.54867 * 111.63722 * 60.61934 * 7 6 5 22 22 C 1.48161 * 110.99850 * 165.25062 * 3 2 1 23 23 H 1.08996 * 109.47560 * 300.00545 * 1 2 3 24 24 H 1.09002 * 109.46990 * 60.00276 * 1 2 3 25 25 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47560 * 239.99455 * 2 1 3 27 27 H 1.09002 * 109.46990 * 119.99724 * 2 1 3 28 28 H 1.08997 * 108.89141 * 70.84962 * 4 3 2 29 29 H 1.09001 * 108.89163 * 312.36568 * 4 3 2 30 30 H 1.08992 * 109.69667 * 334.34959 * 5 4 3 31 31 H 1.09005 * 109.68768 * 213.76646 * 5 4 3 32 32 H 1.09008 * 108.83251 * 159.72100 * 6 5 4 33 33 H 1.09003 * 108.75012 * 41.33565 * 6 5 4 34 34 H 1.08999 * 110.81274 * 219.43076 * 8 7 6 35 35 H 1.08999 * 110.80888 * 342.95110 * 8 7 6 36 36 H 1.08996 * 111.13728 * 276.66295 * 9 8 7 37 37 H 1.09003 * 111.16840 * 152.48907 * 9 8 7 38 38 H 1.08999 * 109.47857 * 302.79880 * 11 10 9 39 39 H 1.09002 * 109.47554 * 62.80759 * 11 10 9 40 40 H 1.09004 * 109.47135 * 182.80343 * 11 10 9 41 41 H 0.96999 * 119.99725 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.54393 * 42.63523 * 21 7 6 43 43 H 1.08999 * 109.54615 * 162.91345 * 21 7 6 44 44 H 1.08998 * 108.74311 * 323.61514 * 22 3 2 45 45 H 1.08995 * 108.74111 * 205.51012 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6678 2.0716 -1.2620 5 6 2.3834 3.3861 -1.4193 6 6 3.6654 3.1450 -2.2366 7 6 4.7511 2.5852 -1.4325 8 6 6.0280 2.3608 -2.2814 9 6 6.9047 3.5814 -1.8952 10 6 6.5182 3.7597 -0.4060 11 6 7.3160 2.7929 0.4714 12 6 6.7595 5.1817 0.0306 13 1 7.1933 5.8917 -0.6580 14 6 6.4265 5.5763 1.3090 15 7 5.8987 4.7115 2.1476 16 14 6.7250 7.3392 1.8499 17 1 7.3243 8.1063 0.7286 18 1 5.4352 7.9616 2.2426 19 1 7.6534 7.3508 3.0090 20 8 5.1189 3.4500 -0.3430 21 6 4.3634 1.2145 -0.8247 22 6 3.4578 1.4397 0.3522 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5928 2.2508 -1.2784 29 1 1.9288 1.4252 -2.1000 30 1 2.6428 3.7829 -0.4378 31 1 1.7410 4.0934 -1.9439 32 1 3.9952 4.0930 -2.6618 33 1 3.4381 2.4555 -3.0497 34 1 6.5187 1.4280 -2.0036 35 1 5.7927 2.3740 -3.3456 36 1 6.6337 4.4606 -2.4796 37 1 7.9654 3.3536 -2.0015 38 1 7.1411 1.7702 0.1374 39 1 8.3785 3.0239 0.3934 40 1 6.9971 2.8959 1.5086 41 1 5.6640 4.9892 3.0469 42 1 3.8454 0.6166 -1.5745 43 1 5.2630 0.6929 -0.4981 44 1 3.6636 0.6772 1.1033 45 1 3.6765 2.4178 0.7803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:27 Heat of formation + Delta-G solvation = -46.165686 kcal Electronic energy + Delta-G solvation = -22842.727588 eV Core-core repulsion = 19859.855108 eV Total energy + Delta-G solvation = -2982.872479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83635 -37.39250 -34.12769 -32.45004 -31.40419 -31.05362 -30.16695 -27.74573 -25.59929 -25.25563 -24.30045 -22.06633 -21.68575 -19.76882 -19.19114 -18.45555 -16.44965 -15.92562 -15.08369 -14.83678 -14.81455 -14.41932 -13.97405 -13.62055 -13.33313 -12.83037 -12.57355 -12.30877 -12.04088 -11.91843 -11.75097 -11.68026 -11.62899 -11.13902 -11.03313 -10.90971 -10.74445 -10.71113 -10.58795 -10.46657 -10.26622 -10.13457 -10.04545 -9.98994 -9.39617 -9.30211 -8.89180 -8.44895 -7.87655 -7.70766 -5.92155 -4.06544 3.32238 3.41065 3.43845 4.25166 4.46027 4.86871 5.14112 5.21707 5.33324 5.41493 5.48196 5.49538 5.58406 5.62507 5.66229 5.83597 5.88215 5.95265 5.98653 6.01849 6.11779 6.15523 6.21853 6.29164 6.34130 6.36712 6.44861 6.46341 6.60571 6.64597 6.77353 6.81757 6.91472 6.96959 7.05333 7.14925 7.20971 7.42644 7.62301 7.64703 7.82584 8.14758 8.42448 8.71694 9.11967 9.63667 11.10661 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.006671 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.633701 B = 4196.390705 C = 4630.333218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.548 5.548 4 C 0.070 3.930 5 C -0.119 4.119 6 C -0.106 4.106 7 C 0.104 3.896 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.234 3.766 11 C -0.144 4.144 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.083 3.917 15 N -0.857 5.857 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.285 1.285 20 O -0.333 6.333 21 C -0.145 4.145 22 C 0.058 3.942 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.258 0.742 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -7.849 -6.400 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 N -0.274 5.274 4 C -0.057 4.057 5 C -0.156 4.156 6 C -0.144 4.144 7 C 0.063 3.937 8 C -0.186 4.186 9 C -0.180 4.180 10 C 0.197 3.803 11 C -0.202 4.202 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.123 4.123 15 N -0.493 5.493 16 Si 0.713 3.287 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.211 1.211 20 O -0.252 6.252 21 C -0.185 4.185 22 C -0.068 4.068 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.655 -7.561 -5.706 11.577 hybrid contribution 0.778 0.261 -0.580 1.005 sum -5.878 -7.300 -6.286 11.285 Atomic orbital electron populations 1.21787 0.95622 1.00745 1.02289 1.22047 0.95449 0.90006 1.00014 1.62031 1.17173 1.14252 1.33897 1.21750 0.99232 0.95173 0.89561 1.21257 0.95530 0.96037 1.02801 1.20659 0.95411 1.00868 0.97416 1.20897 0.93312 0.90398 0.89108 1.23306 0.97030 0.99334 0.98896 1.23270 0.98317 0.96066 1.00329 1.19775 0.78781 0.93915 0.87862 1.22096 0.98217 0.95328 1.04551 1.21015 1.42778 0.94827 0.97509 0.92249 1.24969 0.93898 0.96835 0.96577 1.69969 1.40171 1.33446 1.05740 0.86663 0.77863 0.85591 0.78551 1.19873 1.20943 1.21088 1.88863 1.27402 1.64989 1.43977 1.22369 0.99879 0.97564 0.98642 1.21858 0.83597 1.05157 0.96216 0.91992 0.92983 0.93022 0.95802 0.91330 0.91978 0.95784 0.88813 0.92080 0.91882 0.93005 0.91824 0.92518 0.91979 0.92342 0.97111 0.94926 0.89503 0.93174 0.93466 0.91918 0.92780 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.84 37.16 0.37 -1.32 16 2 C 0.05 0.72 5.61 -3.82 -0.02 0.70 16 3 N -0.55 -8.89 4.68 -235.96 -1.10 -10.00 16 4 C 0.07 1.06 4.48 -4.52 -0.02 1.04 16 5 C -0.12 -2.00 5.60 -27.49 -0.15 -2.15 16 6 C -0.11 -1.83 4.21 -29.45 -0.12 -1.96 16 7 C 0.10 1.98 0.74 -91.81 -0.07 1.91 16 8 C -0.15 -2.67 5.67 -24.55 -0.14 -2.81 16 9 C -0.14 -2.94 6.00 -24.58 -0.15 -3.09 16 10 C 0.23 5.68 0.72 -90.78 -0.07 5.61 16 11 C -0.14 -3.43 8.64 37.16 0.32 -3.11 16 12 C -0.52 -14.18 8.28 -34.44 -0.29 -14.47 16 13 H 0.06 1.61 7.77 -52.48 -0.41 1.20 16 14 C 0.08 2.25 5.28 -17.82 -0.09 2.16 16 15 N -0.86 -24.00 11.07 55.43 0.61 -23.38 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 O -0.33 -7.90 7.07 -35.23 -0.25 -8.15 16 21 C -0.15 -2.56 4.62 -27.14 -0.13 -2.69 16 22 C 0.06 1.06 5.04 -4.52 -0.02 1.04 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.58 6.80 -51.93 -0.35 0.23 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.32 7.82 -51.93 -0.41 -0.09 16 27 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 28 H 0.06 0.86 7.01 -51.93 -0.36 0.50 16 29 H 0.02 0.35 6.39 -51.93 -0.33 0.02 16 30 H 0.09 1.92 6.46 -51.93 -0.34 1.59 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.05 0.79 7.47 -51.93 -0.39 0.41 16 34 H 0.06 1.11 6.94 -51.93 -0.36 0.75 16 35 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 38 H 0.01 0.22 6.88 -51.93 -0.36 -0.14 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 2.30 6.21 -51.93 -0.32 1.97 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.05 0.77 6.91 -51.93 -0.36 0.41 16 43 H 0.06 1.13 7.00 -51.93 -0.36 0.77 16 44 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 45 H 0.11 2.54 5.48 -51.93 -0.28 2.26 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -27.52 325.75 -9.35 -36.87 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.92 Total: 2.81 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.58 Total: -19.13 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.49 Total: -33.38 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.25 Total: -8.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.52 -9.35 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.297 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds