Wall clock time and date at job start Mon Mar 30 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47213 * 2 1 4 4 C 1.47911 * 110.99726 * 293.95030 * 3 2 1 5 5 C 1.50496 * 112.42722 * 191.60743 * 4 3 2 6 6 C 1.53945 * 108.33885 * 94.06390 * 5 4 3 7 7 C 1.46247 * 112.72117 * 280.55547 * 6 5 4 8 8 C 1.54962 * 111.46320 * 180.27409 * 7 6 5 9 9 C 1.55170 * 102.43602 * 101.18950 * 8 7 6 10 10 C 1.54893 * 100.87966 * 34.56990 * 9 8 7 11 11 C 1.52997 * 110.39543 * 82.16480 * 10 9 8 12 12 C 1.50697 * 110.31465 * 204.30138 * 10 9 8 13 13 H 1.08005 * 119.99571 * 357.14844 * 12 10 9 14 14 C 1.37874 * 120.00325 * 177.14802 * 12 10 9 15 15 N 1.31518 * 119.99629 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00109 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47316 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47309 * 119.99987 * 16 14 12 19 19 H 1.48507 * 109.46822 * 239.99956 * 16 14 12 20 20 O 1.43455 * 105.11645 * 323.21395 * 10 9 8 21 21 C 1.54867 * 111.63722 * 60.61934 * 7 6 5 22 22 C 1.48161 * 110.99850 * 165.25062 * 3 2 1 23 23 H 1.08996 * 109.47560 * 300.00545 * 1 2 3 24 24 H 1.09002 * 109.46990 * 60.00276 * 1 2 3 25 25 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47560 * 239.99455 * 2 1 3 27 27 H 1.09002 * 109.46990 * 119.99724 * 2 1 3 28 28 H 1.08997 * 108.89141 * 70.84962 * 4 3 2 29 29 H 1.09001 * 108.89163 * 312.36568 * 4 3 2 30 30 H 1.08992 * 109.69667 * 334.34959 * 5 4 3 31 31 H 1.09005 * 109.68768 * 213.76646 * 5 4 3 32 32 H 1.09008 * 108.83251 * 159.72100 * 6 5 4 33 33 H 1.09003 * 108.75012 * 41.33565 * 6 5 4 34 34 H 1.08999 * 110.81274 * 219.43076 * 8 7 6 35 35 H 1.08999 * 110.80888 * 342.95110 * 8 7 6 36 36 H 1.08996 * 111.13728 * 276.66295 * 9 8 7 37 37 H 1.09003 * 111.16840 * 152.48907 * 9 8 7 38 38 H 1.08999 * 109.47857 * 302.79880 * 11 10 9 39 39 H 1.09002 * 109.47554 * 62.80759 * 11 10 9 40 40 H 1.09004 * 109.47135 * 182.80343 * 11 10 9 41 41 H 0.96999 * 119.99725 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.54393 * 42.63523 * 21 7 6 43 43 H 1.08999 * 109.54615 * 162.91345 * 21 7 6 44 44 H 1.08998 * 108.74311 * 323.61514 * 22 3 2 45 45 H 1.08995 * 108.74111 * 205.51012 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6678 2.0716 -1.2620 5 6 2.3834 3.3861 -1.4193 6 6 3.6654 3.1450 -2.2366 7 6 4.7511 2.5852 -1.4325 8 6 6.0280 2.3608 -2.2814 9 6 6.9047 3.5814 -1.8952 10 6 6.5182 3.7597 -0.4060 11 6 7.3160 2.7929 0.4714 12 6 6.7595 5.1817 0.0306 13 1 7.1933 5.8917 -0.6580 14 6 6.4265 5.5763 1.3090 15 7 5.8987 4.7115 2.1476 16 14 6.7250 7.3392 1.8499 17 1 7.3243 8.1063 0.7286 18 1 5.4352 7.9616 2.2426 19 1 7.6534 7.3508 3.0090 20 8 5.1189 3.4500 -0.3430 21 6 4.3634 1.2145 -0.8247 22 6 3.4578 1.4397 0.3522 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5928 2.2508 -1.2784 29 1 1.9288 1.4252 -2.1000 30 1 2.6428 3.7829 -0.4378 31 1 1.7410 4.0934 -1.9439 32 1 3.9952 4.0930 -2.6618 33 1 3.4381 2.4555 -3.0497 34 1 6.5187 1.4280 -2.0036 35 1 5.7927 2.3740 -3.3456 36 1 6.6337 4.4606 -2.4796 37 1 7.9654 3.3536 -2.0015 38 1 7.1411 1.7702 0.1374 39 1 8.3785 3.0239 0.3934 40 1 6.9971 2.8959 1.5086 41 1 5.6640 4.9892 3.0469 42 1 3.8454 0.6166 -1.5745 43 1 5.2630 0.6929 -0.4981 44 1 3.6636 0.6772 1.1033 45 1 3.6765 2.4178 0.7803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:27 Heat of formation + Delta-G solvation = -61.786389 kcal Electronic energy + Delta-G solvation = -22843.404952 eV Core-core repulsion = 19859.855108 eV Total energy + Delta-G solvation = -2983.549844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34024 -38.82942 -35.67209 -34.18682 -32.86331 -32.69945 -31.57265 -29.31183 -27.35487 -26.77141 -25.86472 -23.37038 -23.06526 -21.44247 -20.58734 -19.98345 -18.38289 -17.27794 -16.65976 -16.41524 -16.27466 -15.97551 -15.42189 -15.08413 -14.65167 -14.45819 -14.12447 -13.89906 -13.52732 -13.36459 -13.09058 -13.07221 -12.83392 -12.82114 -12.72160 -12.54388 -12.38960 -12.29772 -12.09317 -12.00703 -11.84326 -11.73758 -11.64078 -11.36940 -10.94726 -10.86746 -10.70296 -10.49304 -9.64028 -8.96107 -7.98428 -6.19103 1.40373 1.43584 1.52962 2.46118 3.02509 3.13528 3.55475 3.78239 3.94838 4.08450 4.15179 4.17392 4.29005 4.39145 4.47675 4.52125 4.58319 4.63599 4.66795 4.71675 4.79211 4.88182 4.90508 4.95851 4.97775 5.03581 5.05892 5.09961 5.16080 5.16362 5.20360 5.28202 5.38412 5.40820 5.47314 5.58095 5.61871 5.69379 5.80526 6.18763 6.34158 6.40648 6.43454 6.74617 7.29072 7.55633 9.02545 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.006671 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.633701 B = 4196.390705 C = 4630.333218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 N -0.562 5.562 4 C 0.074 3.926 5 C -0.114 4.114 6 C -0.105 4.105 7 C 0.093 3.907 8 C -0.138 4.138 9 C -0.139 4.139 10 C 0.220 3.780 11 C -0.133 4.133 12 C -0.544 4.544 13 H 0.051 0.949 14 C 0.038 3.962 15 N -0.881 5.881 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.280 1.280 20 O -0.359 6.359 21 C -0.134 4.134 22 C 0.070 3.930 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.256 0.744 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -9.082 -8.284 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 N -0.288 5.288 4 C -0.053 4.053 5 C -0.152 4.152 6 C -0.143 4.143 7 C 0.053 3.947 8 C -0.175 4.175 9 C -0.177 4.177 10 C 0.183 3.817 11 C -0.191 4.191 12 C -0.581 4.581 13 H 0.069 0.931 14 C -0.165 4.165 15 N -0.518 5.518 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.206 1.206 20 O -0.279 6.279 21 C -0.174 4.174 22 C -0.057 4.057 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.572 -8.798 -7.601 13.875 hybrid contribution 1.031 0.633 0.006 1.209 sum -6.541 -8.165 -7.595 12.928 Atomic orbital electron populations 1.21744 0.93846 1.02150 1.02075 1.22131 0.96831 0.88261 1.00358 1.61971 1.15590 1.16306 1.34927 1.21743 0.99878 0.94196 0.89477 1.21195 0.96058 0.97446 1.00516 1.20675 0.94883 1.00892 0.97836 1.21201 0.94482 0.90487 0.88544 1.23279 0.95641 0.98251 1.00341 1.23162 0.99443 0.97231 0.97836 1.19794 0.79476 0.92495 0.89974 1.21935 0.98021 0.96445 1.02687 1.21380 1.42663 0.96477 0.97630 0.93077 1.25628 0.93932 1.00140 0.96801 1.70112 1.41133 1.34853 1.05751 0.85773 0.77527 0.81608 0.78223 1.19357 1.21181 1.20552 1.88829 1.26731 1.66266 1.46046 1.22251 0.99555 0.96867 0.98692 1.21535 0.85445 1.02204 0.96525 0.92909 0.92465 0.90839 0.94875 0.91535 0.90328 0.94295 0.93305 0.90303 0.93164 0.89919 0.90908 0.89684 0.92676 0.91396 0.95330 0.94912 0.92689 0.93520 0.91200 0.92540 0.92968 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.84 71.98 0.71 -2.12 16 2 C 0.05 1.28 5.61 86.30 0.48 1.77 16 3 N -0.56 -17.56 4.68 -900.45 -4.21 -21.77 16 4 C 0.07 2.07 4.48 85.30 0.38 2.45 16 5 C -0.11 -3.75 5.60 30.10 0.17 -3.58 16 6 C -0.11 -3.45 4.21 28.83 0.12 -3.33 16 7 C 0.09 3.44 0.74 -11.56 -0.01 3.43 16 8 C -0.14 -4.64 5.67 32.01 0.18 -4.46 16 9 C -0.14 -5.63 6.00 31.98 0.19 -5.44 16 10 C 0.22 10.83 0.72 -10.89 -0.01 10.82 16 11 C -0.13 -6.43 8.64 71.98 0.62 -5.81 16 12 C -0.54 -30.14 8.28 25.60 0.21 -29.93 16 13 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 14 C 0.04 2.11 5.28 84.65 0.45 2.56 16 15 N -0.88 -51.24 11.07 21.45 0.24 -51.00 16 16 Si 0.94 44.31 29.54 68.60 2.03 46.33 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 O -0.36 -17.39 7.07 -148.98 -1.05 -18.45 16 21 C -0.13 -4.53 4.62 30.33 0.14 -4.39 16 22 C 0.07 2.58 5.04 85.16 0.43 3.01 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.09 6.80 -2.39 -0.02 1.08 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.03 0.77 7.82 -2.39 -0.02 0.75 16 27 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 28 H 0.08 1.96 7.01 -2.39 -0.02 1.94 16 29 H 0.04 0.99 6.39 -2.39 -0.02 0.97 16 30 H 0.05 2.06 6.46 -2.39 -0.02 2.04 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.08 2.20 7.47 -2.39 -0.02 2.19 16 34 H 0.07 2.32 6.94 -2.39 -0.02 2.30 16 35 H 0.08 2.40 7.85 -2.39 -0.02 2.38 16 36 H 0.05 2.27 8.05 -2.39 -0.02 2.25 16 37 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 38 H 0.03 1.22 6.88 -2.39 -0.02 1.20 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 3.00 6.21 -2.39 -0.01 2.99 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 42 H 0.07 2.03 6.91 -2.39 -0.02 2.02 16 43 H 0.06 1.96 7.00 -2.39 -0.02 1.94 16 44 H 0.05 1.87 7.57 -2.39 -0.02 1.86 16 45 H 0.06 3.03 5.48 -2.39 -0.01 3.02 16 Total: -1.00 -61.17 325.75 2.01 -59.16 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.94 Total: 20.74 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 4.07 Total: -35.02 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -3.97 Total: -72.77 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.05 Total: -18.45 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.17 2.01 -59.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.626 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds