Wall clock time and date at job start Mon Mar 30 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47083 * 2 1 4 4 C 1.44261 * 110.99959 * 293.95598 * 3 2 1 5 5 C 1.53862 * 108.17053 * 221.50575 * 4 3 2 6 6 C 1.45953 * 112.80192 * 277.98597 * 5 4 3 7 7 C 1.54586 * 111.38688 * 61.36899 * 6 5 4 8 8 C 1.53937 * 108.63821 * 162.17422 * 7 6 5 9 9 C 1.54869 * 104.08700 * 240.30631 * 8 7 6 10 10 C 1.54985 * 102.13362 * 339.07319 * 9 8 7 11 11 C 1.52999 * 110.60481 * 278.37723 * 10 9 8 12 12 C 1.50698 * 110.60877 * 155.40535 * 10 9 8 13 13 H 1.08003 * 120.00045 * 5.42651 * 12 10 9 14 14 C 1.37874 * 119.99840 * 185.42725 * 12 10 9 15 15 N 1.31508 * 120.00074 * 5.22485 * 14 12 10 16 16 Si 1.86799 * 119.99911 * 185.21921 * 14 12 10 17 17 H 1.48500 * 109.47296 * 85.00035 * 16 14 12 18 18 H 1.48501 * 109.47102 * 205.00118 * 16 14 12 19 19 H 1.48506 * 109.47174 * 325.00076 * 16 14 12 20 20 O 1.43461 * 108.99448 * 45.25730 * 7 6 5 21 21 C 1.50449 * 109.32698 * 283.30913 * 7 6 5 22 22 C 1.47967 * 110.99553 * 61.22545 * 3 2 1 23 23 H 1.09004 * 109.47557 * 299.99937 * 1 2 3 24 24 H 1.09002 * 109.47435 * 59.99962 * 1 2 3 25 25 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47038 * 240.00107 * 2 1 3 27 27 H 1.08995 * 109.47219 * 119.99709 * 2 1 3 28 28 H 1.09004 * 109.72247 * 101.84046 * 4 3 2 29 29 H 1.08999 * 109.75663 * 341.19727 * 4 3 2 30 30 H 1.08999 * 108.81732 * 157.12175 * 5 4 3 31 31 H 1.09003 * 108.81848 * 38.83839 * 5 4 3 32 32 H 1.08996 * 109.09600 * 300.87504 * 6 5 4 33 33 H 1.09009 * 109.04740 * 181.82632 * 6 5 4 34 34 H 1.09001 * 110.50613 * 121.65907 * 8 7 6 35 35 H 1.08995 * 110.62179 * 359.01711 * 8 7 6 36 36 H 1.09003 * 110.90931 * 97.29095 * 9 8 7 37 37 H 1.08999 * 110.90990 * 220.85537 * 9 8 7 38 38 H 1.08999 * 109.47505 * 54.55113 * 11 10 9 39 39 H 1.09004 * 109.46624 * 174.55115 * 11 10 9 40 40 H 1.09001 * 109.46819 * 294.54734 * 11 10 9 41 41 H 0.97008 * 120.00143 * 179.97438 * 15 14 12 42 42 H 1.08999 * 108.76156 * 212.47708 * 21 7 6 43 43 H 1.08997 * 108.75922 * 330.62304 * 21 7 6 44 44 H 1.08996 * 108.72698 * 313.41768 * 22 3 2 45 45 H 1.08998 * 108.72194 * 71.59459 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6764 2.0547 -1.2308 5 6 2.8878 2.8929 -1.6750 6 6 2.9645 4.1814 -0.9938 7 6 3.1180 4.0031 0.5341 8 6 3.6354 5.3231 1.1339 9 6 4.9846 4.9363 1.7885 10 6 4.8308 3.4050 1.9714 11 6 4.0245 3.0917 3.2333 12 6 6.1815 2.7388 2.0242 13 1 7.0798 3.3385 2.0258 14 6 6.2706 1.3637 2.0704 15 7 5.1841 0.6305 1.9649 16 14 7.9348 0.5423 2.2827 17 1 8.2706 0.4703 3.7275 18 1 7.8852 -0.8300 1.7172 19 1 8.9716 1.3333 1.5723 20 8 4.1062 2.9951 0.7896 21 6 1.7871 3.6293 1.1279 22 6 1.5694 2.1065 1.2109 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8180 2.7065 -1.0679 29 1 1.4382 1.3174 -1.9974 30 1 2.8206 3.0663 -2.7490 31 1 3.7988 2.3312 -1.4682 32 1 2.0552 4.7470 -1.1973 33 1 3.8219 4.7355 -1.3761 34 1 2.9407 5.6995 1.8848 35 1 3.7896 6.0659 0.3513 36 1 5.8187 5.1670 1.1258 37 1 5.1063 5.4327 2.7512 38 1 3.0708 3.6181 3.1953 39 1 3.8449 2.0182 3.2925 40 1 4.5835 3.4155 4.1113 41 1 5.2468 -0.3370 1.9970 42 1 1.7213 4.0481 2.1321 43 1 0.9961 4.0639 0.5168 44 1 0.5072 1.9125 1.3591 45 1 2.1180 1.7228 2.0710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:38 Heat of formation + Delta-G solvation = -33.342253 kcal Electronic energy + Delta-G solvation = -23439.923937 eV Core-core repulsion = 20457.607523 eV Total energy + Delta-G solvation = -2982.316414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.65701 -37.27456 -34.13119 -32.33235 -31.20191 -30.74806 -29.75340 -27.98353 -25.23194 -25.08811 -24.33162 -22.12297 -21.38370 -19.48762 -18.91931 -18.23442 -16.35130 -15.66193 -15.12876 -14.58715 -14.47479 -14.14752 -13.81186 -13.50480 -13.07115 -12.78414 -12.64321 -12.50007 -12.19298 -11.93203 -11.53887 -11.48498 -11.28460 -11.04837 -10.77602 -10.67989 -10.55872 -10.41896 -10.39572 -10.34139 -10.10229 -9.96206 -9.80925 -9.71337 -9.40723 -9.10549 -8.67836 -8.32811 -7.75012 -7.17667 -5.77697 -3.91041 3.39371 3.46183 3.49109 4.55475 4.62802 5.15439 5.31879 5.42408 5.46476 5.52396 5.58335 5.62295 5.74825 5.80804 5.86865 5.94040 5.99478 6.03418 6.07958 6.19215 6.22931 6.25725 6.42452 6.46047 6.51545 6.54255 6.64185 6.67840 6.71545 6.79821 6.86405 6.97685 6.99772 7.07048 7.12153 7.22109 7.35028 7.46839 7.91487 7.95827 8.14260 8.18178 8.54735 8.84669 9.24194 9.76139 11.23936 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.009225 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.911992 B = 3034.457415 C = 3823.152379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.062 3.938 3 N -0.504 5.504 4 C 0.071 3.929 5 C -0.111 4.111 6 C -0.100 4.100 7 C 0.105 3.895 8 C -0.147 4.147 9 C -0.143 4.143 10 C 0.230 3.770 11 C -0.146 4.146 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.085 3.915 15 N -0.835 5.835 16 Si 0.879 3.121 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.277 1.277 20 O -0.294 6.294 21 C -0.124 4.124 22 C 0.083 3.917 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.016 0.984 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.012 0.988 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 3.156 -3.536 10.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.066 4.066 3 N -0.227 5.227 4 C -0.058 4.058 5 C -0.149 4.149 6 C -0.138 4.138 7 C 0.063 3.937 8 C -0.185 4.185 9 C -0.181 4.181 10 C 0.192 3.808 11 C -0.204 4.204 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.122 4.122 15 N -0.470 5.470 16 Si 0.707 3.293 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.202 1.202 20 O -0.212 6.212 21 C -0.162 4.162 22 C -0.044 4.044 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.510 2.768 -3.652 9.665 hybrid contribution -0.109 -0.125 0.215 0.271 sum -8.618 2.644 -3.437 9.648 Atomic orbital electron populations 1.22533 0.99987 1.01278 1.01380 1.22092 0.90833 0.91134 1.02572 1.60654 1.60608 1.00690 1.00721 1.21670 0.95718 0.96381 0.92012 1.20365 1.00971 0.96848 0.96713 1.20730 0.99844 0.97458 0.95737 1.21353 0.90472 0.89024 0.92811 1.23082 0.98355 0.97719 0.99338 1.23216 0.95346 1.00678 0.98858 1.19948 0.90687 0.86483 0.83645 1.22204 0.96672 1.03162 0.98353 1.20756 0.90475 0.91411 1.53743 0.92525 1.24943 0.95588 0.97474 0.94168 1.70078 1.26443 1.04608 1.45827 0.86854 0.85564 0.78862 0.77987 1.20941 1.21440 1.20229 1.89482 1.45407 1.40799 1.45526 1.21963 0.97784 0.96053 1.00370 1.22173 0.95440 0.92780 0.93988 0.92614 0.93392 0.92974 0.91655 0.90609 0.95650 0.92855 0.94306 0.89088 0.93835 0.92693 0.92708 0.92542 0.92208 0.92929 0.96473 0.90325 0.95159 0.93543 0.91986 0.93771 0.97008 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 9.41 37.16 0.35 -2.27 16 2 C 0.06 1.03 5.85 -3.82 -0.02 1.00 16 3 N -0.50 -9.36 3.58 -234.64 -0.84 -10.20 16 4 C 0.07 1.18 4.40 -4.79 -0.02 1.16 16 5 C -0.11 -1.96 5.18 -29.62 -0.15 -2.12 16 6 C -0.10 -1.76 4.40 -29.24 -0.13 -1.89 16 7 C 0.11 2.04 0.60 -90.57 -0.05 1.99 16 8 C -0.15 -2.72 5.77 -25.26 -0.15 -2.86 16 9 C -0.14 -3.04 6.04 -24.70 -0.15 -3.19 16 10 C 0.23 5.60 0.74 -90.72 -0.07 5.53 16 11 C -0.15 -3.40 7.33 37.16 0.27 -3.13 16 12 C -0.53 -14.39 8.30 -34.44 -0.29 -14.68 16 13 H 0.06 1.56 7.78 -52.48 -0.41 1.15 16 14 C 0.09 2.32 5.26 -17.82 -0.09 2.23 16 15 N -0.83 -22.96 11.34 55.43 0.63 -22.33 16 16 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 O -0.29 -7.01 6.98 -35.23 -0.25 -7.25 16 21 C -0.12 -2.21 3.80 -27.46 -0.10 -2.31 16 22 C 0.08 1.54 4.75 -2.69 -0.01 1.52 16 23 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 24 H 0.05 0.63 7.24 -51.93 -0.38 0.25 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.03 0.40 6.75 -51.93 -0.35 0.05 16 29 H 0.05 0.81 7.25 -51.93 -0.38 0.44 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.97 7.27 -51.93 -0.38 1.59 16 32 H 0.04 0.68 7.64 -51.93 -0.40 0.28 16 33 H 0.05 0.97 7.78 -51.92 -0.40 0.57 16 34 H 0.05 0.93 7.34 -51.93 -0.38 0.55 16 35 H 0.06 0.95 7.46 -51.93 -0.39 0.56 16 36 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 38 H 0.02 0.35 5.06 -51.93 -0.26 0.09 16 39 H 0.08 2.01 5.97 -51.93 -0.31 1.70 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.06 1.09 5.60 -51.93 -0.29 0.80 16 43 H 0.04 0.71 6.69 -51.93 -0.35 0.37 16 44 H 0.01 0.20 5.72 -51.93 -0.30 -0.10 16 45 H 0.09 1.84 6.48 -51.93 -0.34 1.50 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -27.60 317.64 -9.00 -36.60 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.69 Total: 1.20 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.62 Total: -19.01 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.21 Total: -32.53 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.25 Total: -7.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.60 -9.00 -36.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.256 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds