Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47083 * 2 1 4 4 C 1.44261 * 110.99959 * 293.95598 * 3 2 1 5 5 C 1.53862 * 108.17053 * 221.50575 * 4 3 2 6 6 C 1.45953 * 112.80192 * 277.98597 * 5 4 3 7 7 C 1.54586 * 111.38688 * 61.36899 * 6 5 4 8 8 C 1.53937 * 108.63821 * 162.17422 * 7 6 5 9 9 C 1.54869 * 104.08700 * 240.30631 * 8 7 6 10 10 C 1.54985 * 102.13362 * 339.07319 * 9 8 7 11 11 C 1.52999 * 110.60481 * 278.37723 * 10 9 8 12 12 C 1.50698 * 110.60877 * 155.40535 * 10 9 8 13 13 H 1.08003 * 120.00045 * 5.42651 * 12 10 9 14 14 C 1.37874 * 119.99840 * 185.42725 * 12 10 9 15 15 N 1.31508 * 120.00074 * 5.22485 * 14 12 10 16 16 Si 1.86799 * 119.99911 * 185.21921 * 14 12 10 17 17 H 1.48500 * 109.47296 * 85.00035 * 16 14 12 18 18 H 1.48501 * 109.47102 * 205.00118 * 16 14 12 19 19 H 1.48506 * 109.47174 * 325.00076 * 16 14 12 20 20 O 1.43461 * 108.99448 * 45.25730 * 7 6 5 21 21 C 1.50449 * 109.32698 * 283.30913 * 7 6 5 22 22 C 1.47967 * 110.99553 * 61.22545 * 3 2 1 23 23 H 1.09004 * 109.47557 * 299.99937 * 1 2 3 24 24 H 1.09002 * 109.47435 * 59.99962 * 1 2 3 25 25 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47038 * 240.00107 * 2 1 3 27 27 H 1.08995 * 109.47219 * 119.99709 * 2 1 3 28 28 H 1.09004 * 109.72247 * 101.84046 * 4 3 2 29 29 H 1.08999 * 109.75663 * 341.19727 * 4 3 2 30 30 H 1.08999 * 108.81732 * 157.12175 * 5 4 3 31 31 H 1.09003 * 108.81848 * 38.83839 * 5 4 3 32 32 H 1.08996 * 109.09600 * 300.87504 * 6 5 4 33 33 H 1.09009 * 109.04740 * 181.82632 * 6 5 4 34 34 H 1.09001 * 110.50613 * 121.65907 * 8 7 6 35 35 H 1.08995 * 110.62179 * 359.01711 * 8 7 6 36 36 H 1.09003 * 110.90931 * 97.29095 * 9 8 7 37 37 H 1.08999 * 110.90990 * 220.85537 * 9 8 7 38 38 H 1.08999 * 109.47505 * 54.55113 * 11 10 9 39 39 H 1.09004 * 109.46624 * 174.55115 * 11 10 9 40 40 H 1.09001 * 109.46819 * 294.54734 * 11 10 9 41 41 H 0.97008 * 120.00143 * 179.97438 * 15 14 12 42 42 H 1.08999 * 108.76156 * 212.47708 * 21 7 6 43 43 H 1.08997 * 108.75922 * 330.62304 * 21 7 6 44 44 H 1.08996 * 108.72698 * 313.41768 * 22 3 2 45 45 H 1.08998 * 108.72194 * 71.59459 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6764 2.0547 -1.2308 5 6 2.8878 2.8929 -1.6750 6 6 2.9645 4.1814 -0.9938 7 6 3.1180 4.0031 0.5341 8 6 3.6354 5.3231 1.1339 9 6 4.9846 4.9363 1.7885 10 6 4.8308 3.4050 1.9714 11 6 4.0245 3.0917 3.2333 12 6 6.1815 2.7388 2.0242 13 1 7.0798 3.3385 2.0258 14 6 6.2706 1.3637 2.0704 15 7 5.1841 0.6305 1.9649 16 14 7.9348 0.5423 2.2827 17 1 8.2706 0.4703 3.7275 18 1 7.8852 -0.8300 1.7172 19 1 8.9716 1.3333 1.5723 20 8 4.1062 2.9951 0.7896 21 6 1.7871 3.6293 1.1279 22 6 1.5694 2.1065 1.2109 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8180 2.7065 -1.0679 29 1 1.4382 1.3174 -1.9974 30 1 2.8206 3.0663 -2.7490 31 1 3.7988 2.3312 -1.4682 32 1 2.0552 4.7470 -1.1973 33 1 3.8219 4.7355 -1.3761 34 1 2.9407 5.6995 1.8848 35 1 3.7896 6.0659 0.3513 36 1 5.8187 5.1670 1.1258 37 1 5.1063 5.4327 2.7512 38 1 3.0708 3.6181 3.1953 39 1 3.8449 2.0182 3.2925 40 1 4.5835 3.4155 4.1113 41 1 5.2468 -0.3370 1.9970 42 1 1.7213 4.0481 2.1321 43 1 0.9961 4.0639 0.5168 44 1 0.5072 1.9125 1.3591 45 1 2.1180 1.7228 2.0710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -48.409798 kcal Electronic energy + Delta-G solvation = -23440.577315 eV Core-core repulsion = 20457.607523 eV Total energy + Delta-G solvation = -2982.969792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18049 -38.75902 -35.70301 -34.15775 -32.73234 -32.39244 -31.25293 -29.54047 -27.15812 -26.46794 -25.92879 -23.52513 -22.88979 -21.17753 -20.36939 -19.76449 -18.29691 -17.07584 -16.64689 -16.35091 -16.02937 -15.72170 -15.47743 -14.81553 -14.55877 -14.29912 -14.11342 -14.08689 -13.70720 -13.53233 -13.01207 -12.96291 -12.79759 -12.66892 -12.60253 -12.45831 -12.26897 -12.12162 -11.92508 -11.81451 -11.62753 -11.52424 -11.35835 -11.19373 -10.95604 -10.70242 -10.53081 -10.39265 -9.48351 -8.51111 -7.84886 -6.03956 1.43846 1.46051 1.53021 2.52733 3.26935 3.32579 3.77089 3.91320 4.09714 4.21073 4.26179 4.31261 4.34857 4.43848 4.52379 4.56166 4.59516 4.64072 4.76748 4.77818 4.87744 4.91275 4.99039 5.01966 5.06842 5.07520 5.15323 5.19937 5.21928 5.29888 5.32212 5.37775 5.41862 5.48838 5.55178 5.63785 5.74430 5.80572 5.93021 6.23325 6.55493 6.61582 6.83506 6.85276 7.42130 7.66288 9.13857 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.009225 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.911992 B = 3034.457415 C = 3823.152379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 N -0.533 5.533 4 C 0.076 3.924 5 C -0.106 4.106 6 C -0.098 4.098 7 C 0.092 3.908 8 C -0.138 4.138 9 C -0.142 4.142 10 C 0.219 3.781 11 C -0.131 4.131 12 C -0.551 4.551 13 H 0.043 0.957 14 C 0.045 3.955 15 N -0.848 5.848 16 Si 0.932 3.068 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.279 1.279 20 O -0.318 6.318 21 C -0.121 4.121 22 C 0.090 3.910 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.251 0.749 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 4.256 -4.461 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.065 4.065 3 N -0.256 5.256 4 C -0.052 4.052 5 C -0.145 4.145 6 C -0.136 4.136 7 C 0.051 3.949 8 C -0.176 4.176 9 C -0.180 4.180 10 C 0.180 3.820 11 C -0.189 4.189 12 C -0.589 4.589 13 H 0.062 0.938 14 C -0.160 4.160 15 N -0.483 5.483 16 Si 0.759 3.241 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 O -0.237 6.237 21 C -0.158 4.158 22 C -0.037 4.037 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.322 3.873 -4.575 11.936 hybrid contribution 0.482 -0.475 0.477 0.828 sum -9.840 3.398 -4.098 11.188 Atomic orbital electron populations 1.22368 0.97193 1.02486 1.01677 1.22015 0.93087 0.90128 1.01280 1.60512 1.62047 1.01564 1.01473 1.21647 0.95516 0.96673 0.91369 1.20316 0.99332 0.96499 0.98330 1.20739 1.01061 0.97640 0.94152 1.21663 0.90284 0.88487 0.94487 1.23057 0.96710 0.97698 1.00133 1.23122 0.96782 0.98766 0.99372 1.19938 0.89675 0.88112 0.84234 1.22010 0.97547 1.01416 0.97890 1.21092 0.91831 0.91926 1.54063 0.93840 1.25509 0.98257 0.98019 0.94223 1.70212 1.27599 1.04284 1.46225 0.86021 0.82321 0.77764 0.77968 1.20372 1.21394 1.20423 1.89429 1.46671 1.42580 1.44994 1.21921 0.97565 0.95539 1.00822 1.22005 0.95755 0.93159 0.92798 0.92938 0.92218 0.91392 0.91635 0.93291 0.93984 0.91543 0.91935 0.93893 0.90721 0.93288 0.90825 0.90599 0.93569 0.92098 0.94287 0.93194 0.95667 0.93994 0.91918 0.91127 0.95146 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 9.41 71.98 0.68 -3.77 16 2 C 0.06 2.06 5.85 86.30 0.50 2.57 16 3 N -0.53 -19.39 3.58 -896.27 -3.21 -22.60 16 4 C 0.08 2.35 4.40 87.09 0.38 2.74 16 5 C -0.11 -3.59 5.18 28.72 0.15 -3.44 16 6 C -0.10 -3.21 4.40 28.97 0.13 -3.08 16 7 C 0.09 3.41 0.60 -10.76 -0.01 3.40 16 8 C -0.14 -4.77 5.77 31.55 0.18 -4.58 16 9 C -0.14 -5.97 6.04 31.91 0.19 -5.78 16 10 C 0.22 10.76 0.74 -10.86 -0.01 10.75 16 11 C -0.13 -6.17 7.33 71.98 0.53 -5.64 16 12 C -0.55 -30.97 8.30 25.60 0.21 -30.75 16 13 H 0.04 2.47 7.78 -2.91 -0.02 2.45 16 14 C 0.05 2.52 5.26 84.65 0.45 2.96 16 15 N -0.85 -48.20 11.34 21.45 0.24 -47.95 16 16 Si 0.93 44.66 29.54 68.60 2.03 46.68 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 O -0.32 -15.28 6.98 -148.98 -1.04 -16.32 16 21 C -0.12 -4.00 3.80 30.13 0.11 -3.89 16 22 C 0.09 3.24 4.75 86.45 0.41 3.65 16 23 H 0.05 1.34 6.16 -2.39 -0.01 1.33 16 24 H 0.06 1.36 7.24 -2.39 -0.02 1.34 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.16 6.75 -2.38 -0.02 1.15 16 29 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.87 7.27 -2.39 -0.02 1.85 16 32 H 0.07 1.99 7.64 -2.39 -0.02 1.97 16 33 H 0.05 1.63 7.78 -2.38 -0.02 1.61 16 34 H 0.07 2.26 7.34 -2.39 -0.02 2.24 16 35 H 0.08 2.31 7.46 -2.39 -0.02 2.30 16 36 H 0.05 2.01 8.05 -2.39 -0.02 1.99 16 37 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 38 H 0.04 1.61 5.06 -2.39 -0.01 1.59 16 39 H 0.05 2.63 5.97 -2.39 -0.01 2.61 16 40 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 42 H 0.06 2.05 5.60 -2.39 -0.01 2.03 16 43 H 0.07 1.97 6.69 -2.39 -0.02 1.96 16 44 H 0.03 0.97 5.72 -2.39 -0.01 0.96 16 45 H 0.04 1.99 6.48 -2.39 -0.02 1.97 16 Total: -1.00 -60.91 317.64 2.89 -58.03 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.95 Total: 17.03 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.91 Total: -34.87 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.96 Total: -70.55 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.04 Total: -16.32 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -60.91 2.89 -58.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.616 kcal (2) G-P(sol) polarization free energy of solvation -60.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds