Wall clock time and date at job start Mon Mar 30 2020 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99687 * 2 1 4 4 C 1.53005 * 109.47284 * 150.00285 * 3 2 1 5 5 C 1.52993 * 109.47405 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46880 * 299.99615 * 5 4 3 7 7 N 1.46501 * 109.46973 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00445 * 305.77681 * 7 6 5 9 9 H 1.07992 * 120.00377 * 122.51976 * 8 7 6 10 10 C 1.38816 * 119.99684 * 302.51359 * 8 7 6 11 11 N 1.31624 * 119.99900 * 323.99729 * 10 8 7 12 12 Si 1.86801 * 120.00091 * 143.99720 * 10 8 7 13 13 H 1.48503 * 109.47008 * 90.00050 * 12 10 8 14 14 H 1.48490 * 109.47436 * 210.00132 * 12 10 8 15 15 H 1.48499 * 109.46977 * 330.00530 * 12 10 8 16 16 C 1.46507 * 119.99601 * 125.77064 * 7 6 5 17 17 C 1.54971 * 110.91883 * 122.74714 * 16 7 6 18 18 C 1.54274 * 104.15656 * 156.29491 * 17 16 7 19 19 C 1.53870 * 106.63972 * 336.44850 * 18 17 16 20 20 C 1.54269 * 106.60109 * 359.97057 * 19 18 17 21 21 C 1.53004 * 109.47157 * 60.00030 * 6 5 4 22 22 C 1.52999 * 109.47186 * 300.00101 * 21 6 5 23 23 H 1.08993 * 109.47292 * 60.00229 * 1 2 3 24 24 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47067 * 300.00196 * 1 2 3 26 26 H 1.08996 * 109.47711 * 30.00078 * 3 2 1 27 27 H 1.08999 * 109.47408 * 59.99218 * 4 3 2 28 28 H 1.09004 * 109.46874 * 299.99601 * 4 3 2 29 29 H 1.08996 * 109.47151 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47386 * 59.99315 * 5 4 3 31 31 H 1.09001 * 109.47589 * 300.00182 * 6 5 4 32 32 H 0.97003 * 119.99819 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.67380 * 359.44457 * 16 7 6 34 34 H 1.09002 * 110.47832 * 37.64433 * 17 16 7 35 35 H 1.08994 * 110.52988 * 274.97206 * 17 16 7 36 36 H 1.08996 * 110.03009 * 217.13632 * 18 17 16 37 37 H 1.08999 * 110.02788 * 95.75568 * 18 17 16 38 38 H 1.09004 * 110.03482 * 119.26311 * 19 18 17 39 39 H 1.09006 * 110.02901 * 240.63870 * 19 18 17 40 40 H 1.09001 * 110.48271 * 142.28749 * 20 19 18 41 41 H 1.08991 * 110.49135 * 264.80218 * 20 19 18 42 42 H 1.09001 * 109.46747 * 59.99636 * 21 6 5 43 43 H 1.09004 * 109.47244 * 179.97438 * 21 6 5 44 44 H 1.09004 * 109.46724 * 299.99939 * 22 21 6 45 45 H 1.08996 * 109.47136 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2634 0.7212 5 6 3.9814 2.6609 0.7207 6 6 4.1890 3.1262 -0.7221 7 7 4.7845 4.4647 -0.7226 8 6 4.1838 5.4818 -0.0299 9 1 4.7314 6.0105 0.7361 10 6 2.8709 5.8332 -0.3124 11 7 2.4282 5.7829 -1.5510 12 14 1.7325 6.3773 1.0650 13 1 1.8285 7.8496 1.2340 14 1 0.3346 6.0080 0.7270 15 1 2.1297 5.7071 2.3293 16 6 6.0229 4.7151 -1.4642 17 6 5.8260 5.8473 -2.5039 18 6 7.2484 6.3975 -2.7365 19 6 8.0676 6.0454 -1.4825 20 6 7.1146 5.2937 -0.5302 21 6 2.8403 3.1683 -1.4433 22 6 2.2177 1.7708 -1.4427 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.3450 1.9994 0.5138 27 1 4.0242 0.5694 0.2075 28 1 3.2112 0.9315 1.7489 29 1 4.9420 2.6310 1.2348 30 1 3.3163 3.3552 1.2342 31 1 4.8541 2.4320 -1.2357 32 1 1.5106 6.0281 -1.7483 33 1 6.3725 3.8033 -1.9486 34 1 5.1770 6.6253 -2.1021 35 1 5.4153 5.4477 -3.4311 36 1 7.2134 7.4789 -2.8682 37 1 7.6909 5.9287 -3.6154 38 1 8.9073 5.4050 -1.7526 39 1 8.4310 6.9560 -1.0061 40 1 7.6433 4.4900 -0.0177 41 1 6.6759 5.9819 0.1921 42 1 2.1752 3.8626 -0.9297 43 1 2.9880 3.5002 -2.4711 44 1 2.8829 1.0765 -1.9563 45 1 1.2567 1.8009 -1.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686362299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:27 Heat of formation + Delta-G solvation = -44.595115 kcal Electronic energy + Delta-G solvation = -22366.275227 eV Core-core repulsion = 19383.470853 eV Total energy + Delta-G solvation = -2982.804374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.80174 -37.48900 -35.95903 -33.27468 -31.26318 -29.87703 -28.36201 -27.69037 -26.39666 -25.81287 -23.49018 -21.71085 -20.85261 -19.46534 -19.29395 -18.81383 -16.27842 -16.13671 -15.30910 -15.15062 -14.77125 -14.54417 -14.35851 -13.75347 -13.22472 -12.99384 -12.47880 -12.37279 -12.29249 -11.97003 -11.83236 -11.47790 -11.31721 -11.03292 -10.98191 -10.78123 -10.49136 -10.43199 -10.29740 -10.22525 -10.13507 -10.02416 -9.89978 -9.73743 -9.55857 -9.47521 -9.23576 -8.84651 -7.84255 -6.39528 -5.68538 -3.49754 3.28528 3.39878 3.46013 4.09703 4.44548 5.12233 5.27551 5.29945 5.41711 5.54180 5.54387 5.56126 5.60796 5.72912 5.77334 5.85800 6.05932 6.16617 6.17842 6.28888 6.30198 6.35671 6.36989 6.46486 6.53207 6.55126 6.60626 6.65811 6.69185 6.74469 6.76511 6.85658 7.00296 7.18388 7.20609 7.23466 7.35752 7.50932 7.58576 7.67426 7.84168 7.92312 8.71090 9.27288 9.78667 10.57621 11.03553 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.007225 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.609481 B = 3874.368570 C = 4651.268837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.090 3.910 4 C -0.109 4.109 5 C -0.116 4.116 6 C 0.190 3.810 7 N -0.573 5.573 8 C -0.282 4.282 9 H 0.049 0.951 10 C 0.055 3.945 11 N -0.839 5.839 12 Si 0.854 3.146 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.273 1.273 16 C 0.173 3.827 17 C -0.120 4.120 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.140 4.140 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.253 0.747 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -5.848 0.571 6.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C 0.033 3.967 4 C -0.148 4.148 5 C -0.155 4.155 6 C 0.084 3.916 7 N -0.292 5.292 8 C -0.411 4.411 9 H 0.066 0.934 10 C -0.150 4.150 11 N -0.475 5.475 12 Si 0.681 3.319 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.198 1.198 16 C 0.066 3.934 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.158 4.158 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.179 4.179 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.489 -5.969 0.447 6.168 hybrid contribution -1.104 0.572 0.555 1.361 sum 0.386 -5.397 1.002 5.503 Atomic orbital electron populations 1.22687 0.82099 1.01782 0.99800 1.87850 1.18859 1.29395 1.95205 1.22276 0.94874 0.82912 0.96646 1.21589 0.94914 0.99009 0.99254 1.21811 1.00141 0.93451 1.00126 1.20357 0.92874 0.86145 0.92253 1.43715 1.24486 1.04587 1.56387 1.18338 0.95116 1.13988 1.13656 0.93359 1.25357 1.00269 0.95229 0.94173 1.70442 1.16014 1.44208 1.16801 0.87155 0.80881 0.78902 0.84957 1.21014 1.21466 1.19797 1.21416 0.87373 0.94272 0.90336 1.22626 0.93984 1.00513 0.98798 1.22114 0.97787 0.99671 0.96735 1.22040 0.97766 0.99211 0.96740 1.22697 0.96776 0.99143 0.98630 1.22293 0.99009 0.92461 1.02237 1.22161 1.00389 0.99852 0.95453 0.94302 0.90351 0.94495 0.92666 0.92043 0.92591 0.92554 0.91278 0.94517 0.93651 0.93774 0.89600 0.93736 0.93259 0.93533 0.93362 0.93219 0.93783 0.90968 0.89125 0.91937 0.92692 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.54 16 2 O -0.39 -6.64 10.35 -35.23 -0.36 -7.00 16 3 C 0.09 1.60 2.61 -26.73 -0.07 1.53 16 4 C -0.11 -1.89 5.57 -26.73 -0.15 -2.04 16 5 C -0.12 -2.27 5.08 -26.73 -0.14 -2.41 16 6 C 0.19 4.02 2.64 -67.93 -0.18 3.84 16 7 N -0.57 -13.06 2.40 -155.85 -0.37 -13.43 16 8 C -0.28 -7.03 6.27 -15.06 -0.09 -7.13 16 9 H 0.05 1.27 7.04 -52.49 -0.37 0.91 16 10 C 0.06 1.39 3.52 -17.43 -0.06 1.33 16 11 N -0.84 -21.77 10.94 55.49 0.61 -21.17 16 12 Si 0.85 19.88 29.67 -169.99 -5.04 14.84 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 C 0.17 3.61 3.44 -65.89 -0.23 3.38 16 17 C -0.12 -2.50 6.39 -25.02 -0.16 -2.66 16 18 C -0.12 -2.15 6.80 -25.61 -0.17 -2.33 16 19 C -0.12 -1.97 6.80 -25.61 -0.17 -2.14 16 20 C -0.13 -2.52 6.36 -25.07 -0.16 -2.68 16 21 C -0.12 -2.60 3.89 -26.73 -0.10 -2.71 16 22 C -0.14 -2.60 5.54 -26.73 -0.15 -2.75 16 23 H 0.04 0.51 7.87 -51.93 -0.41 0.10 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.49 7.54 -51.93 -0.39 1.10 16 31 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 32 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.04 0.89 7.63 -51.93 -0.40 0.50 16 34 H 0.09 2.09 7.22 -51.93 -0.38 1.71 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.51 6.60 -51.93 -0.34 1.16 16 42 H 0.09 2.19 4.85 -51.93 -0.25 1.93 16 43 H 0.06 1.49 7.91 -51.93 -0.41 1.08 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.85 7.87 -51.93 -0.41 0.44 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -25.31 336.30 -9.21 -34.52 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.36 Total: 2.40 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.74 Total: -15.22 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.23 Total: -34.60 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.36 Total: -7.00 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.04 Total: 14.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.31 -9.21 -34.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.075 kcal (2) G-P(sol) polarization free energy of solvation -25.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds