Wall clock time and date at job start Mon Mar 30 2020 08:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99687 * 2 1 4 4 C 1.53005 * 109.47284 * 150.00285 * 3 2 1 5 5 C 1.52993 * 109.47405 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46880 * 299.99615 * 5 4 3 7 7 N 1.46501 * 109.46973 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00445 * 305.77681 * 7 6 5 9 9 H 1.07992 * 120.00377 * 122.51976 * 8 7 6 10 10 C 1.38816 * 119.99684 * 302.51359 * 8 7 6 11 11 N 1.31624 * 119.99900 * 323.99729 * 10 8 7 12 12 Si 1.86801 * 120.00091 * 143.99720 * 10 8 7 13 13 H 1.48503 * 109.47008 * 90.00050 * 12 10 8 14 14 H 1.48490 * 109.47436 * 210.00132 * 12 10 8 15 15 H 1.48499 * 109.46977 * 330.00530 * 12 10 8 16 16 C 1.46507 * 119.99601 * 125.77064 * 7 6 5 17 17 C 1.54971 * 110.91883 * 122.74714 * 16 7 6 18 18 C 1.54274 * 104.15656 * 156.29491 * 17 16 7 19 19 C 1.53870 * 106.63972 * 336.44850 * 18 17 16 20 20 C 1.54269 * 106.60109 * 359.97057 * 19 18 17 21 21 C 1.53004 * 109.47157 * 60.00030 * 6 5 4 22 22 C 1.52999 * 109.47186 * 300.00101 * 21 6 5 23 23 H 1.08993 * 109.47292 * 60.00229 * 1 2 3 24 24 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47067 * 300.00196 * 1 2 3 26 26 H 1.08996 * 109.47711 * 30.00078 * 3 2 1 27 27 H 1.08999 * 109.47408 * 59.99218 * 4 3 2 28 28 H 1.09004 * 109.46874 * 299.99601 * 4 3 2 29 29 H 1.08996 * 109.47151 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47386 * 59.99315 * 5 4 3 31 31 H 1.09001 * 109.47589 * 300.00182 * 6 5 4 32 32 H 0.97003 * 119.99819 * 179.97438 * 11 10 8 33 33 H 1.09000 * 110.67380 * 359.44457 * 16 7 6 34 34 H 1.09002 * 110.47832 * 37.64433 * 17 16 7 35 35 H 1.08994 * 110.52988 * 274.97206 * 17 16 7 36 36 H 1.08996 * 110.03009 * 217.13632 * 18 17 16 37 37 H 1.08999 * 110.02788 * 95.75568 * 18 17 16 38 38 H 1.09004 * 110.03482 * 119.26311 * 19 18 17 39 39 H 1.09006 * 110.02901 * 240.63870 * 19 18 17 40 40 H 1.09001 * 110.48271 * 142.28749 * 20 19 18 41 41 H 1.08991 * 110.49135 * 264.80218 * 20 19 18 42 42 H 1.09001 * 109.46747 * 59.99636 * 21 6 5 43 43 H 1.09004 * 109.47244 * 179.97438 * 21 6 5 44 44 H 1.09004 * 109.46724 * 299.99939 * 22 21 6 45 45 H 1.08996 * 109.47136 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2634 0.7212 5 6 3.9814 2.6609 0.7207 6 6 4.1890 3.1262 -0.7221 7 7 4.7845 4.4647 -0.7226 8 6 4.1838 5.4818 -0.0299 9 1 4.7314 6.0105 0.7361 10 6 2.8709 5.8332 -0.3124 11 7 2.4282 5.7829 -1.5510 12 14 1.7325 6.3773 1.0650 13 1 1.8285 7.8496 1.2340 14 1 0.3346 6.0080 0.7270 15 1 2.1297 5.7071 2.3293 16 6 6.0229 4.7151 -1.4642 17 6 5.8260 5.8473 -2.5039 18 6 7.2484 6.3975 -2.7365 19 6 8.0676 6.0454 -1.4825 20 6 7.1146 5.2937 -0.5302 21 6 2.8403 3.1683 -1.4433 22 6 2.2177 1.7708 -1.4427 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.3450 1.9994 0.5138 27 1 4.0242 0.5694 0.2075 28 1 3.2112 0.9315 1.7489 29 1 4.9420 2.6310 1.2348 30 1 3.3163 3.3552 1.2342 31 1 4.8541 2.4320 -1.2357 32 1 1.5106 6.0281 -1.7483 33 1 6.3725 3.8033 -1.9486 34 1 5.1770 6.6253 -2.1021 35 1 5.4153 5.4477 -3.4311 36 1 7.2134 7.4789 -2.8682 37 1 7.6909 5.9287 -3.6154 38 1 8.9073 5.4050 -1.7526 39 1 8.4310 6.9560 -1.0061 40 1 7.6433 4.4900 -0.0177 41 1 6.6759 5.9819 0.1921 42 1 2.1752 3.8626 -0.9297 43 1 2.9880 3.5002 -2.4711 44 1 2.8829 1.0765 -1.9563 45 1 1.2567 1.8009 -1.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686362299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:26 Heat of formation + Delta-G solvation = -56.064213 kcal Electronic energy + Delta-G solvation = -22366.772565 eV Core-core repulsion = 19383.470853 eV Total energy + Delta-G solvation = -2983.301712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.31686 -39.01126 -37.43994 -34.96407 -33.08108 -31.45776 -29.84512 -29.23585 -27.93329 -27.23341 -25.20659 -23.28204 -22.39335 -21.16158 -20.79002 -20.41354 -18.10602 -17.47632 -16.91746 -16.67484 -16.36303 -15.99019 -15.94893 -15.32604 -14.78131 -14.42818 -14.04515 -14.00219 -13.93450 -13.55283 -13.27373 -13.06818 -13.03140 -12.74669 -12.65514 -12.33924 -12.15607 -11.92450 -11.90309 -11.78230 -11.71401 -11.66346 -11.50927 -11.24516 -11.18191 -11.03540 -10.88817 -10.30627 -9.77377 -8.32375 -7.55076 -5.46179 1.37962 1.47048 1.54572 2.51712 2.82649 3.16360 3.64576 3.88173 3.97918 4.10961 4.12285 4.27288 4.37379 4.44357 4.48654 4.53392 4.59521 4.68800 4.72926 4.76510 4.80018 4.85279 4.91240 5.00244 5.01240 5.02077 5.07943 5.10631 5.17453 5.23677 5.30201 5.31671 5.39052 5.52181 5.57461 5.70645 5.73241 5.78562 5.86994 5.91328 6.08370 6.29457 6.70486 7.38437 7.95793 8.66813 9.07259 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.007225 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.609481 B = 3874.368570 C = 4651.268837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.096 3.904 4 C -0.102 4.102 5 C -0.106 4.106 6 C 0.186 3.814 7 N -0.584 5.584 8 C -0.278 4.278 9 H 0.032 0.968 10 C 0.027 3.973 11 N -0.860 5.860 12 Si 0.897 3.103 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.271 1.271 16 C 0.163 3.837 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.132 4.132 23 H 0.038 0.962 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.249 0.751 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -7.304 0.958 7.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.038 3.962 4 C -0.140 4.140 5 C -0.145 4.145 6 C 0.079 3.921 7 N -0.303 5.303 8 C -0.408 4.408 9 H 0.049 0.951 10 C -0.176 4.176 11 N -0.497 5.497 12 Si 0.725 3.275 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.196 1.196 16 C 0.056 3.944 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.166 4.166 21 C -0.147 4.147 22 C -0.170 4.170 23 H 0.057 0.943 24 H 0.124 0.876 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.503 -7.430 0.843 7.886 hybrid contribution -1.434 1.009 0.400 1.799 sum 1.069 -6.421 1.243 6.627 Atomic orbital electron populations 1.22937 0.80292 1.03773 1.00128 1.87825 1.20820 1.28284 1.95203 1.22098 0.95138 0.83401 0.95540 1.21510 0.94649 0.97479 1.00401 1.21652 0.99999 0.94352 0.98466 1.20464 0.92569 0.85604 0.93433 1.43894 1.25058 1.04835 1.56533 1.18234 0.95234 1.14177 1.13115 0.95089 1.25702 1.01050 0.95745 0.95129 1.70512 1.15765 1.45676 1.17745 0.86479 0.79577 0.78143 0.83330 1.21441 1.21691 1.19637 1.21608 0.87255 0.94692 0.90801 1.22467 0.95701 0.99451 0.97832 1.22062 0.95286 1.00030 0.98201 1.22008 0.97623 0.99905 0.95422 1.22572 0.96608 0.99123 0.98258 1.22018 0.99076 0.93698 0.99869 1.22045 1.00346 0.98005 0.96648 0.94333 0.87578 0.93851 0.93729 0.90884 0.90972 0.92043 0.93777 0.93579 0.94110 0.92811 0.93734 0.95261 0.92760 0.91372 0.90716 0.92074 0.92493 0.93587 0.91729 0.95042 0.91844 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 10.82 113.37 1.23 1.84 16 2 O -0.40 -12.61 10.35 -148.98 -1.54 -14.15 16 3 C 0.10 3.26 2.61 30.60 0.08 3.34 16 4 C -0.10 -3.33 5.57 30.59 0.17 -3.16 16 5 C -0.11 -4.05 5.08 30.59 0.16 -3.89 16 6 C 0.19 7.83 2.64 44.99 0.12 7.95 16 7 N -0.58 -26.99 2.40 -646.99 -1.56 -28.54 16 8 C -0.28 -14.22 6.27 84.03 0.53 -13.70 16 9 H 0.03 1.70 7.04 -2.91 -0.02 1.68 16 10 C 0.03 1.41 3.52 84.86 0.30 1.71 16 11 N -0.86 -46.28 10.94 21.65 0.24 -46.05 16 12 Si 0.90 41.82 29.67 68.60 2.04 43.85 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.16 6.75 3.44 46.31 0.16 6.91 16 17 C -0.11 -4.86 6.39 31.70 0.20 -4.65 16 18 C -0.12 -3.85 6.80 31.32 0.21 -3.64 16 19 C -0.11 -3.37 6.80 31.32 0.21 -3.16 16 20 C -0.13 -4.63 6.36 31.67 0.20 -4.43 16 21 C -0.11 -4.69 3.89 30.60 0.12 -4.57 16 22 C -0.13 -4.82 5.54 30.60 0.17 -4.65 16 23 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 24 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.04 1.01 8.09 -2.38 -0.02 0.99 16 26 H 0.04 1.61 7.79 -2.39 -0.02 1.59 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.04 1.90 7.54 -2.39 -0.02 1.88 16 31 H 0.05 1.85 7.60 -2.39 -0.02 1.83 16 32 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 33 H 0.05 2.11 7.63 -2.39 -0.02 2.10 16 34 H 0.04 2.24 7.22 -2.39 -0.02 2.22 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.92 6.60 -2.39 -0.02 1.90 16 42 H 0.06 3.20 4.85 -2.39 -0.01 3.19 16 43 H 0.03 1.53 7.91 -2.39 -0.02 1.52 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 1.74 7.87 -2.39 -0.02 1.72 16 Total: -1.00 -55.28 336.30 3.95 -51.33 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.92 Total: 17.67 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.85 Total: -24.11 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.32 Total: -74.59 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.54 Total: -14.15 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.04 Total: 43.85 kcal Total: -55.28 3.95 -51.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.736 kcal (2) G-P(sol) polarization free energy of solvation -55.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds