Wall clock time and date at job start Mon Mar 30 2020 07:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99987 * 2 1 4 4 H 1.08997 * 109.46938 * 30.00639 * 3 2 1 5 5 C 1.53000 * 109.47617 * 270.00374 * 3 2 1 6 6 C 1.52994 * 109.47119 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47182 * 60.00054 * 6 5 3 8 8 C 1.52996 * 109.47378 * 300.00072 * 7 6 5 9 9 C 1.52998 * 109.47145 * 59.99488 * 8 7 6 10 10 H 1.08997 * 109.46990 * 60.00278 * 9 8 7 11 11 N 1.46909 * 109.47083 * 180.02562 * 9 8 7 12 12 C 1.46895 * 110.99643 * 194.32795 * 11 9 8 13 13 C 1.46898 * 110.99429 * 318.28364 * 11 9 8 14 14 C 1.53010 * 109.46600 * 175.11755 * 13 11 9 15 15 C 1.50697 * 115.54507 * 302.12712 * 14 13 11 16 16 H 1.08009 * 119.99865 * 149.51005 * 15 14 13 17 17 C 1.37874 * 120.00412 * 329.50607 * 15 14 13 18 18 N 1.31512 * 120.00043 * 346.42177 * 17 15 14 19 19 Si 1.86800 * 120.00099 * 166.42221 * 17 15 14 20 20 H 1.48503 * 109.47097 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47149 * 119.99754 * 19 17 15 22 22 H 1.48501 * 109.47493 * 240.00040 * 19 17 15 23 23 C 1.52996 * 117.49891 * 156.45862 * 14 13 11 24 24 C 1.52995 * 117.49602 * 87.79839 * 14 13 11 25 25 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46958 * 299.99549 * 1 2 3 27 27 H 1.09000 * 109.47362 * 59.99558 * 1 2 3 28 28 H 1.09002 * 109.46767 * 300.00300 * 5 3 2 29 29 H 1.09004 * 109.46663 * 59.99578 * 5 3 2 30 30 H 1.09004 * 109.47044 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.47690 * 299.99911 * 6 5 3 32 32 H 1.09004 * 109.47113 * 60.00143 * 7 6 5 33 33 H 1.08999 * 109.47073 * 179.97438 * 7 6 5 34 34 H 1.09010 * 109.46642 * 299.99920 * 8 7 6 35 35 H 1.08997 * 109.47360 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47150 * 49.56357 * 12 11 9 37 37 H 1.09000 * 109.46747 * 169.55968 * 12 11 9 38 38 H 1.08995 * 109.47457 * 289.55905 * 12 11 9 39 39 H 1.08998 * 109.47456 * 295.11315 * 13 11 9 40 40 H 1.08996 * 109.47302 * 55.12117 * 13 11 9 41 41 H 0.97001 * 119.99752 * 185.14153 * 18 17 15 42 42 H 1.09001 * 117.50044 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.49906 * 145.01847 * 23 14 13 44 44 H 1.09009 * 117.49645 * 214.97888 * 24 14 13 45 45 H 1.08989 * 117.50645 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 2.8393 3.1695 -1.4423 7 6 4.1879 3.1278 -0.7209 8 6 3.9806 2.6618 0.7215 9 6 3.3588 1.2638 0.7214 10 1 4.0244 0.5702 0.2076 11 7 3.1592 0.8166 2.1064 12 6 2.8889 -0.6263 2.1598 13 6 4.3137 1.1674 2.9443 14 6 4.0192 0.7963 4.3993 15 6 2.7961 1.4403 4.9994 16 1 2.2340 0.9241 5.7637 17 6 2.3945 2.6884 4.5729 18 7 3.2065 3.4294 3.8510 19 14 0.6970 3.3269 5.0203 20 1 -0.0163 2.3091 5.8332 21 1 0.8306 4.5809 5.8044 22 1 -0.0727 3.5984 3.7797 23 6 5.2150 0.5541 5.3224 24 6 4.3619 -0.6254 4.8489 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 2.8828 1.0776 -1.9563 29 1 1.2567 1.8015 -1.9562 30 1 2.9866 3.5017 -2.4700 31 1 2.1737 3.8632 -0.9286 32 1 4.8536 2.4342 -1.2348 33 1 4.6310 4.1237 -0.7212 34 1 3.3150 3.3555 1.2353 35 1 4.9413 2.6325 1.2355 36 1 3.6385 -1.1583 1.5741 37 1 2.9288 -0.9653 3.1950 38 1 1.8988 -0.8259 1.7501 39 1 5.1917 0.6206 2.6005 40 1 4.5019 2.2386 2.8735 41 1 2.9543 4.3355 3.6140 42 1 6.2115 0.6586 4.8932 43 1 5.1169 0.8601 6.3639 44 1 3.7027 -1.0949 5.5792 45 1 4.7966 -1.2965 4.1083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687466586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:36 Heat of formation + Delta-G solvation = -14.488955 kcal Electronic energy + Delta-G solvation = -22828.468137 eV Core-core repulsion = 19846.969264 eV Total energy + Delta-G solvation = -2981.498873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.30150 -37.12561 -35.96186 -34.09298 -31.99611 -29.82490 -28.87612 -26.54572 -26.00483 -25.23988 -23.21336 -21.70835 -21.05534 -20.57942 -19.33431 -18.68858 -16.36864 -15.86844 -15.39007 -15.08741 -14.57315 -14.48111 -13.95726 -13.71316 -13.32025 -13.19066 -12.97109 -12.88467 -12.38186 -12.16358 -11.53891 -11.32114 -11.23676 -11.19417 -10.91730 -10.84166 -10.78685 -10.52234 -10.37887 -10.34412 -10.20911 -10.07740 -9.88544 -9.69191 -9.26526 -8.93607 -8.77309 -8.45099 -7.85765 -6.97561 -5.84049 -3.84719 3.35251 3.43665 3.48712 4.15362 4.51011 4.76055 5.06317 5.15951 5.25860 5.36707 5.52253 5.56665 5.69153 5.73662 5.76229 5.82995 5.86253 5.91082 5.95085 6.02079 6.19764 6.24001 6.32870 6.35922 6.39940 6.44625 6.49974 6.54068 6.65539 6.73156 6.77343 6.78804 6.88786 7.02840 7.07098 7.17260 7.32961 7.43023 7.64787 7.74709 8.15650 8.35724 8.42747 8.67532 9.07596 9.73155 11.15369 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.008303 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.457538 B = 3371.640203 C = 3615.150405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.102 3.898 4 H 0.067 0.933 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.112 4.112 9 C 0.099 3.901 10 H 0.027 0.973 11 N -0.496 5.496 12 C 0.024 3.976 13 C 0.090 3.910 14 C 0.069 3.931 15 C -0.475 4.475 16 H 0.053 0.947 17 C 0.094 3.906 18 N -0.870 5.870 19 Si 0.886 3.114 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.220 4.220 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.071 0.929 36 H -0.004 1.004 37 H 0.073 0.927 38 H 0.070 0.930 39 H -0.022 1.022 40 H 0.133 0.867 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -1.500 -10.101 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C 0.044 3.956 4 H 0.085 0.915 5 C -0.176 4.176 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.149 4.149 9 C -0.011 4.011 10 H 0.045 0.955 11 N -0.219 5.219 12 C -0.124 4.124 13 C -0.036 4.036 14 C 0.069 3.931 15 C -0.512 4.512 16 H 0.071 0.929 17 C -0.109 4.109 18 N -0.507 5.507 19 Si 0.715 3.285 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.250 4.250 24 C -0.258 4.258 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.015 0.985 37 H 0.092 0.908 38 H 0.088 0.912 39 H -0.004 1.004 40 H 0.151 0.849 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.663 -1.264 -10.055 10.269 hybrid contribution -0.372 -0.057 -0.078 0.384 sum -2.035 -1.320 -10.133 10.419 Atomic orbital electron populations 1.22669 0.82287 1.01841 0.99605 1.87927 1.18743 1.28291 1.94602 1.22218 0.95536 0.84312 0.93542 0.91533 1.22026 1.00620 0.97168 0.97801 1.21478 0.97375 0.96485 0.99910 1.21614 0.96545 1.00883 0.96845 1.21703 1.02208 0.96188 0.94834 1.21554 0.93089 0.96106 0.90314 0.95541 1.61714 1.40529 1.13940 1.05685 1.22639 1.00043 0.88293 1.01403 1.22065 0.86690 1.04044 0.90828 1.18979 0.93174 0.90040 0.90943 1.20317 1.08399 1.01930 1.20540 0.92914 1.24677 0.96037 0.96462 0.93771 1.69743 1.35159 1.07812 1.38031 0.86658 0.85760 0.78229 0.77851 1.20128 1.21679 1.21031 1.23003 0.96021 1.05018 1.00923 1.22967 1.05568 0.93159 1.04092 0.90423 0.93789 0.95058 0.91726 0.92454 0.92418 0.91893 0.92706 0.92058 0.89296 0.91001 0.98545 0.90822 0.91185 1.00413 0.84932 0.93424 0.92125 0.90596 0.90977 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.73 101.05 1.08 1.55 16 2 O -0.38 -6.52 7.28 -35.23 -0.26 -6.78 16 3 C 0.10 1.77 2.26 -26.73 -0.06 1.71 16 4 H 0.07 1.27 7.79 -51.93 -0.40 0.86 16 5 C -0.14 -1.96 5.54 -26.73 -0.15 -2.10 16 6 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 7 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 8 C -0.11 -2.02 4.26 -26.73 -0.11 -2.13 16 9 C 0.10 1.88 1.92 -67.71 -0.13 1.75 16 10 H 0.03 0.52 7.84 -51.93 -0.41 0.12 16 11 N -0.50 -10.91 4.32 -234.89 -1.02 -11.93 16 12 C 0.02 0.51 8.73 60.06 0.52 1.04 16 13 C 0.09 2.12 3.27 -3.82 -0.01 2.11 16 14 C 0.07 1.72 1.41 -155.66 -0.22 1.50 16 15 C -0.47 -12.82 8.83 -34.44 -0.30 -13.13 16 16 H 0.05 1.46 7.85 -52.48 -0.41 1.05 16 17 C 0.09 2.47 5.13 -17.82 -0.09 2.38 16 18 N -0.87 -22.65 10.04 55.43 0.56 -22.10 16 19 Si 0.89 21.05 29.56 -169.99 -5.03 16.03 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.21 -4.89 9.95 -26.70 -0.27 -5.16 16 24 C -0.22 -4.94 7.82 -26.70 -0.21 -5.15 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.03 0.39 7.87 -51.93 -0.41 -0.02 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.81 7.58 -51.92 -0.39 1.42 16 35 H 0.07 1.38 6.28 -51.93 -0.33 1.05 16 36 H 0.00 -0.08 7.87 -51.93 -0.41 -0.49 16 37 H 0.07 1.63 4.85 -51.93 -0.25 1.37 16 38 H 0.07 1.43 5.66 -51.93 -0.29 1.13 16 39 H -0.02 -0.52 8.11 -51.93 -0.42 -0.94 16 40 H 0.13 3.29 3.53 -51.93 -0.18 3.11 16 41 H 0.26 6.41 8.32 -40.82 -0.34 6.07 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 44 H 0.07 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.06 1.34 7.86 -51.93 -0.41 0.93 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -26.88 334.85 -9.05 -35.93 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.09 Total: 3.01 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.26 Total: -19.21 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.46 Total: -34.03 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.26 Total: -6.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.88 -9.05 -35.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.439 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds