Wall clock time and date at job start Mon Mar 30 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99987 * 2 1 4 4 H 1.08997 * 109.46938 * 30.00639 * 3 2 1 5 5 C 1.53000 * 109.47617 * 270.00374 * 3 2 1 6 6 C 1.52994 * 109.47119 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47182 * 60.00054 * 6 5 3 8 8 C 1.52996 * 109.47378 * 300.00072 * 7 6 5 9 9 C 1.52998 * 109.47145 * 59.99488 * 8 7 6 10 10 H 1.08997 * 109.46990 * 60.00278 * 9 8 7 11 11 N 1.46909 * 109.47083 * 180.02562 * 9 8 7 12 12 C 1.46895 * 110.99643 * 194.32795 * 11 9 8 13 13 C 1.46898 * 110.99429 * 318.28364 * 11 9 8 14 14 C 1.53010 * 109.46600 * 175.11755 * 13 11 9 15 15 C 1.50697 * 115.54507 * 302.12712 * 14 13 11 16 16 H 1.08009 * 119.99865 * 149.51005 * 15 14 13 17 17 C 1.37874 * 120.00412 * 329.50607 * 15 14 13 18 18 N 1.31512 * 120.00043 * 346.42177 * 17 15 14 19 19 Si 1.86800 * 120.00099 * 166.42221 * 17 15 14 20 20 H 1.48503 * 109.47097 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47149 * 119.99754 * 19 17 15 22 22 H 1.48501 * 109.47493 * 240.00040 * 19 17 15 23 23 C 1.52996 * 117.49891 * 156.45862 * 14 13 11 24 24 C 1.52995 * 117.49602 * 87.79839 * 14 13 11 25 25 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46958 * 299.99549 * 1 2 3 27 27 H 1.09000 * 109.47362 * 59.99558 * 1 2 3 28 28 H 1.09002 * 109.46767 * 300.00300 * 5 3 2 29 29 H 1.09004 * 109.46663 * 59.99578 * 5 3 2 30 30 H 1.09004 * 109.47044 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.47690 * 299.99911 * 6 5 3 32 32 H 1.09004 * 109.47113 * 60.00143 * 7 6 5 33 33 H 1.08999 * 109.47073 * 179.97438 * 7 6 5 34 34 H 1.09010 * 109.46642 * 299.99920 * 8 7 6 35 35 H 1.08997 * 109.47360 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47150 * 49.56357 * 12 11 9 37 37 H 1.09000 * 109.46747 * 169.55968 * 12 11 9 38 38 H 1.08995 * 109.47457 * 289.55905 * 12 11 9 39 39 H 1.08998 * 109.47456 * 295.11315 * 13 11 9 40 40 H 1.08996 * 109.47302 * 55.12117 * 13 11 9 41 41 H 0.97001 * 119.99752 * 185.14153 * 18 17 15 42 42 H 1.09001 * 117.50044 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.49906 * 145.01847 * 23 14 13 44 44 H 1.09009 * 117.49645 * 214.97888 * 24 14 13 45 45 H 1.08989 * 117.50645 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 2.8393 3.1695 -1.4423 7 6 4.1879 3.1278 -0.7209 8 6 3.9806 2.6618 0.7215 9 6 3.3588 1.2638 0.7214 10 1 4.0244 0.5702 0.2076 11 7 3.1592 0.8166 2.1064 12 6 2.8889 -0.6263 2.1598 13 6 4.3137 1.1674 2.9443 14 6 4.0192 0.7963 4.3993 15 6 2.7961 1.4403 4.9994 16 1 2.2340 0.9241 5.7637 17 6 2.3945 2.6884 4.5729 18 7 3.2065 3.4294 3.8510 19 14 0.6970 3.3269 5.0203 20 1 -0.0163 2.3091 5.8332 21 1 0.8306 4.5809 5.8044 22 1 -0.0727 3.5984 3.7797 23 6 5.2150 0.5541 5.3224 24 6 4.3619 -0.6254 4.8489 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 2.8828 1.0776 -1.9563 29 1 1.2567 1.8015 -1.9562 30 1 2.9866 3.5017 -2.4700 31 1 2.1737 3.8632 -0.9286 32 1 4.8536 2.4342 -1.2348 33 1 4.6310 4.1237 -0.7212 34 1 3.3150 3.3555 1.2353 35 1 4.9413 2.6325 1.2355 36 1 3.6385 -1.1583 1.5741 37 1 2.9288 -0.9653 3.1950 38 1 1.8988 -0.8259 1.7501 39 1 5.1917 0.6206 2.6005 40 1 4.5019 2.2386 2.8735 41 1 2.9543 4.3355 3.6140 42 1 6.2115 0.6586 4.8932 43 1 5.1169 0.8601 6.3639 44 1 3.7027 -1.0949 5.5792 45 1 4.7966 -1.2965 4.1083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687466586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:35 Heat of formation + Delta-G solvation = -28.534395 kcal Electronic energy + Delta-G solvation = -22829.077193 eV Core-core repulsion = 19846.969264 eV Total energy + Delta-G solvation = -2982.107929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72617 -38.82644 -37.29889 -35.67744 -34.01949 -31.11319 -30.25251 -28.26523 -27.40375 -27.08599 -24.75145 -23.05319 -22.87725 -21.98854 -20.75304 -20.56628 -18.00915 -17.48455 -16.80631 -16.60063 -16.38795 -15.82258 -15.66829 -15.24919 -14.83513 -14.55034 -14.50540 -14.20353 -13.90627 -13.73267 -13.22418 -12.98292 -12.80710 -12.77552 -12.51120 -12.46507 -12.24458 -12.15787 -12.10057 -11.89384 -11.78844 -11.53983 -11.27879 -11.15117 -11.06971 -10.88979 -10.42174 -10.10587 -9.78989 -8.67911 -7.84752 -5.91598 1.43396 1.48490 1.56264 2.52952 2.89852 3.09220 3.36945 3.79578 3.83399 4.05897 4.12240 4.27301 4.33034 4.38367 4.46268 4.50194 4.53487 4.59268 4.62409 4.63901 4.77266 4.80528 4.84417 4.89248 4.90186 4.95120 5.00668 5.04542 5.09599 5.16626 5.24348 5.27483 5.30660 5.42294 5.45616 5.50912 5.56639 5.64552 5.76027 6.19686 6.37320 6.50942 6.71151 6.79715 7.04226 7.66977 9.11976 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.008303 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.457538 B = 3371.640203 C = 3615.150405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.106 3.894 4 H 0.043 0.957 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.104 4.104 9 C 0.097 3.903 10 H 0.023 0.977 11 N -0.512 5.512 12 C 0.033 3.967 13 C 0.102 3.898 14 C 0.044 3.956 15 C -0.498 4.498 16 H 0.035 0.965 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.933 3.067 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.201 4.201 25 H 0.097 0.903 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.000 1.000 37 H 0.059 0.941 38 H 0.075 0.925 39 H -0.026 1.026 40 H 0.119 0.881 41 H 0.257 0.743 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -1.449 -11.962 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C 0.048 3.952 4 H 0.061 0.939 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.142 4.142 9 C -0.012 4.012 10 H 0.041 0.959 11 N -0.235 5.235 12 C -0.115 4.115 13 C -0.025 4.025 14 C 0.043 3.957 15 C -0.535 4.535 16 H 0.053 0.947 17 C -0.138 4.138 18 N -0.512 5.512 19 Si 0.761 3.239 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.209 1.209 23 C -0.249 4.249 24 C -0.239 4.239 25 H 0.116 0.884 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.019 0.981 37 H 0.078 0.922 38 H 0.093 0.907 39 H -0.008 1.008 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.052 -1.211 -11.918 12.154 hybrid contribution -0.258 -0.095 0.533 0.599 sum -2.309 -1.306 -11.386 11.691 Atomic orbital electron populations 1.22818 0.80697 1.03283 0.99829 1.87877 1.20460 1.28211 1.94775 1.22127 0.93827 0.84034 0.95217 0.93859 1.21966 1.01823 0.97611 0.95381 1.21477 0.96214 0.95820 1.01354 1.21578 0.97773 1.01684 0.94249 1.21570 1.00307 0.95134 0.97154 1.21672 0.94455 0.96287 0.88819 0.95867 1.61698 1.39997 1.14440 1.07340 1.22533 1.00445 0.87963 1.00540 1.21828 0.87112 1.02995 0.90550 1.19085 0.93159 0.91690 0.91752 1.20399 1.09602 1.02525 1.21012 0.94685 1.25118 0.98190 0.96571 0.93954 1.69826 1.35717 1.07825 1.37813 0.85933 0.82859 0.77625 0.77480 1.20677 1.21159 1.20880 1.23007 0.96249 1.05279 1.00386 1.22900 1.04723 0.92451 1.03790 0.88438 0.95452 0.92906 0.91207 0.90691 0.89401 0.92550 0.91617 0.90787 0.91964 0.92890 0.98112 0.92228 0.90670 1.00802 0.86377 0.93292 0.90931 0.91165 0.91024 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.73 113.37 1.22 2.02 16 2 O -0.39 -13.10 7.28 -148.98 -1.08 -14.18 16 3 C 0.11 3.56 2.26 30.60 0.07 3.63 16 4 H 0.04 1.64 7.79 -2.39 -0.02 1.62 16 5 C -0.13 -3.33 5.54 30.59 0.17 -3.16 16 6 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 7 C -0.11 -3.07 5.92 30.59 0.18 -2.88 16 8 C -0.10 -3.74 4.26 30.59 0.13 -3.61 16 9 C 0.10 3.65 1.92 44.91 0.09 3.74 16 10 H 0.02 0.90 7.84 -2.39 -0.02 0.88 16 11 N -0.51 -22.66 4.32 -897.05 -3.88 -26.54 16 12 C 0.03 1.39 8.73 127.69 1.11 2.51 16 13 C 0.10 4.86 3.27 86.31 0.28 5.14 16 14 C 0.04 2.19 1.41 -52.93 -0.07 2.11 16 15 C -0.50 -27.34 8.83 25.60 0.23 -27.11 16 16 H 0.03 1.99 7.85 -2.91 -0.02 1.97 16 17 C 0.06 3.42 5.13 84.65 0.43 3.85 16 18 N -0.87 -46.05 10.04 21.45 0.22 -45.84 16 19 Si 0.93 43.51 29.56 68.60 2.03 45.54 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.21 -9.74 9.95 30.62 0.30 -9.44 16 24 C -0.20 -8.97 7.82 30.62 0.24 -8.73 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 27 H 0.05 1.18 7.87 -2.39 -0.02 1.16 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.57 7.58 -2.38 -0.02 2.55 16 35 H 0.05 2.07 6.28 -2.39 -0.01 2.05 16 36 H 0.00 0.02 7.87 -2.39 -0.02 0.00 16 37 H 0.06 2.63 4.85 -2.39 -0.01 2.62 16 38 H 0.07 3.04 5.66 -2.39 -0.01 3.03 16 39 H -0.03 -1.22 8.11 -2.39 -0.02 -1.24 16 40 H 0.12 5.98 3.53 -2.39 -0.01 5.97 16 41 H 0.26 13.00 8.32 -92.71 -0.77 12.23 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 45 H 0.08 3.18 7.86 -2.39 -0.02 3.16 16 Total: -1.00 -57.14 334.85 2.77 -54.37 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.93 Total: 21.03 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 4.56 Total: -34.38 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -3.66 Total: -72.37 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.08 Total: -14.18 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -57.14 2.77 -54.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.832 kcal (2) G-P(sol) polarization free energy of solvation -57.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds